View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10458_low_19 (Length: 250)
Name: NF10458_low_19
Description: NF10458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10458_low_19 |
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| [»] scaffold1063 (1 HSPs) |
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Alignment Details
Target: scaffold1063 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: scaffold1063
Description:
Target: scaffold1063; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 2872 - 3102
Alignment:
| Q |
1 |
ataaatttttccatttataaatgctctattttttgt--tgtataaaatacatgcaaaagctt-atgtgcatgcttttatcaattcatggatacatccgct |
97 |
Q |
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|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
2872 |
ataaatttttccatttataaatgctctattttttgtgttgtgtaaaatacatgcaaaagctttatgggcatgcttttatcaattcatggatacatccgct |
2971 |
T |
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| Q |
98 |
gatgagataattacttgaaaaatccttctggttacactttaaagaaagcctatgaaccaaaatgttgctacgatatgttgtaggtttggatgaagcaata |
197 |
Q |
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|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
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| T |
2972 |
gatgagataattacttgaaaaatccttcgagttatactttaaagaaagcctatgaaccaaaatgctgctaccatatgttgtaggtttggatgaagcaata |
3071 |
T |
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| Q |
198 |
ggatactgtgatgcttatggaaagatgccat |
228 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
3072 |
ggatactgtgatgcttatggaaagatgccat |
3102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 6 - 149
Target Start/End: Complemental strand, 6943221 - 6943078
Alignment:
| Q |
6 |
tttttccatttataaatgctctattttttgttgtataaaatacatgcaaaagcttatgtgcatgcttttatcaattcatggatacatccgctgatgagat |
105 |
Q |
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||||||||||||||||| ||||||||||| |||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
6943221 |
tttttccatttataaattctctattttttattgtgtaaaatacatacaaaagcttatgtgcatgtttttatcaattcatggatacatccgctgatgagat |
6943122 |
T |
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| Q |
106 |
aattacttgaaaaatccttctggttacactttaaagaaagccta |
149 |
Q |
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| T |
6943121 |
aattacttgaaaaatccttcaggttacactttaaagaaagccta |
6943078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 9 - 149
Target Start/End: Complemental strand, 6940046 - 6939903
Alignment:
| Q |
9 |
ttccatttataaatgctctattttttgttgtataaaatacatgcaaaa---gcttatgtgcatgcttttatcaattcatggatacatccgctgatgagat |
105 |
Q |
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|||||||| ||||||||||||||||| |||| |||||||||| ||||| || |||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
6940046 |
ttccatttgtaaatgctctattttttcttgtgtaaaatacatacaaaaaaagcatatgtgcatgtctttatcaattcatggatacatccgctgatgagat |
6939947 |
T |
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| Q |
106 |
aattacttgaaaaatccttctggttacactttaaagaaagccta |
149 |
Q |
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| T |
6939946 |
aattacttgaaaaatccttcaggttacacttcaaagaaagccta |
6939903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 27 - 125
Target Start/End: Original strand, 6787593 - 6787691
Alignment:
| Q |
27 |
tattttttgttgtataaaatacatgcaaaagcttatgtgcatgcttttatcaattcatggatacatccgctgatgagataattacttgaaaaatccttc |
125 |
Q |
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| T |
6787593 |
tattttttattgtgtaaaatacatgcaaaatcttatggacatgtttttatcaattcatgaatacatccgctgatgagataattacttgaaaaatccttc |
6787691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 160 - 238
Target Start/End: Complemental strand, 6939870 - 6939792
Alignment:
| Q |
160 |
tgttgctacgatatgttgtaggtttggatgaagcaataggatactgtgatgcttatggaaagatgccatgtttgcttca |
238 |
Q |
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||||||||| |||| |||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||| |
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| T |
6939870 |
tgttgctaccatatattgtaggtttggatgaagcatacggataccgtgatgcttatggaaagatgccatttttgcttca |
6939792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 160 - 238
Target Start/End: Complemental strand, 6943045 - 6942967
Alignment:
| Q |
160 |
tgttgctacgatatgttgtaggtttggatgaagcaataggatactgtgatgcttatggaaagatgccatgtttgcttca |
238 |
Q |
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| T |
6943045 |
tgttgctaccatatattgtagctttggatgaagcatacggatactgtgatgcttatggaaagatgccatttttgcttca |
6942967 |
T |
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