View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10458_low_2 (Length: 756)
Name: NF10458_low_2
Description: NF10458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10458_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 19 - 398
Target Start/End: Original strand, 1737637 - 1738009
Alignment:
| Q |
19 |
ttagaagcagtgtttataa-tagcaactgaagcggtttgctataatgctattgcgtagtagaactgaacaaaccgatattctttcgtcatacgctattta |
117 |
Q |
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| T |
1737637 |
ttagaagcggtgtttataaatagcagctgaagcggtttgctataacgttattgcgtagtgtaactgaacaaactgatattctttcgcaatacgctattta |
1737736 |
T |
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| Q |
118 |
gtacaaaatactgtaaaattacaactatagtcatgctatagcactgttgcgtagcggattcggaacaaatcgctatttctttgtgatccgcaatcgacaa |
217 |
Q |
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| T |
1737737 |
gtacaaaataccgtaaaataa----tgtagtcatgctatagcattgttgcgtagcggattcggaacaaatcgctgtttctttgtgatccgaaatcgaaaa |
1737832 |
T |
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| Q |
218 |
aatatgagtatcatgcagtgagttgttggattttgaaatataatgatattagagttgtttgtatattaggttatcgatctgttgatgaaaatattttctt |
317 |
Q |
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| T |
1737833 |
aatatgagtatcttgcagtgagtagttggattttgaagtataatgacattagagttgtttgtatattaggtt----atctgttgatgaaaatattttctt |
1737928 |
T |
|
| Q |
318 |
gactgattattttacttgagaaatttgcactagtgtttagcagggagtgagtagaactattaagttttgaaataacctaaa |
398 |
Q |
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| T |
1737929 |
gactggttattttacttaagaaatttgcactagtgtttagcagggagttagtagaactattaagttttgaaataacctaaa |
1738009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 494 - 748
Target Start/End: Original strand, 1738009 - 1738270
Alignment:
| Q |
494 |
aatcaagccaaatgggtggaagatgtcaatgatacact------actagatctacatacttccattcatgaaattaccaatgactcatttctaaaagaaa |
587 |
Q |
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| T |
1738009 |
aatcaagccaaatgggtggaagatgtcaatggtacacttacactactagatctacatactgccattcatgaaattaccaatgactcatttctaaaagaaa |
1738108 |
T |
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| Q |
588 |
gctccttttatt-atttttgtttagtttgacttacataaccaacatgagtgcacttattttattttttacaaacatgagtgcacttgaaacttcaacggc |
686 |
Q |
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| T |
1738109 |
gctccttttatttatttttgtttagtttgacttacataaccaacatgagtgcacttattttattttttacaaacatgagtgcacttgaaacttcaacggc |
1738208 |
T |
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| Q |
687 |
attattttagtgatggtgattgataattatatatatatgcacttcttttccctgcctttgct |
748 |
Q |
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| T |
1738209 |
attattttagtgatggagattgataactatatatatatgcacttcttttccctgcctttgct |
1738270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 364 - 695
Target Start/End: Original strand, 1716485 - 1716829
Alignment:
| Q |
364 |
gtgagtagaactattaagttttgaaataacctaaattaaacagtct-gagtttcggctagatgtgggaaataaggtgaatttatttgtatttgctaatgt |
462 |
Q |
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| T |
1716485 |
gtgagtagaactat-aagttttgaaataacctaaagtaaacagttaagagtttcaacttcatatggaaaataaggtgaacttatttttatctgctaatgt |
1716583 |
T |
|
| Q |
463 |
attgaaatacagtcattttgatgagcatggcaatcaagccaaatgggtggaagatgtcaatgatacactactagatctacatacttccattcatgaaatt |
562 |
Q |
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| T |
1716584 |
attgaaatagagtcgttttgatgagcatagaactcaagtcaaacgagcgtaagatgtcaagggtacactactagatctacatattgtcattcatgaaatt |
1716683 |
T |
|
| Q |
563 |
accaatgactcatttctaaaagaaagctcctttta-ttatttttgtttagt------------ttgacttacataaccaacatgagtgcacttattttat |
649 |
Q |
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| T |
1716684 |
atcattgactcatttctgaaataaagctccttttatttatttttgtatagttattattatagcttgccttacataaccaacatgattgcactttttattt |
1716783 |
T |
|
| Q |
650 |
tttttacaaacatgagtgcacttgaaacttcaacggcattatttta |
695 |
Q |
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| T |
1716784 |
ttttttaaaacatgagtgcacttgaaacttcaacgacattatttta |
1716829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 20 - 217
Target Start/End: Original strand, 1716178 - 1716376
Alignment:
| Q |
20 |
tagaagcagtgtttataa-tagcaactgaagcggtttgctataatgctattgcgtagtagaactgaacaaaccgatattctttcgtcatacgctatttag |
118 |
Q |
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|||||||||| ||||||| ||||| |||||| ||||||||||||||||||||||||| ||| ||||||||| | |||| ||||| ||||| |||||||| |
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| T |
1716178 |
tagaagcagtatttataaatagcagctgaagtagtttgctataatgctattgcgtagtggaattgaacaaactgctattgtttcgccatacactatttag |
1716277 |
T |
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| Q |
119 |
tacaaaatactgtaaaattacaactatagtcatgctatagcactgttgcgtagcggattcggaacaaatcgctatttctttgtgatccgcaatcgacaa |
217 |
Q |
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| T |
1716278 |
ttcaaaatactgtaaaattatggctgcaatcgtgctatagcactgttgcataccattatcgaaacaaatcgctattcttttgttttccgcaattgacaa |
1716376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 165
Target Start/End: Complemental strand, 13125396 - 13125346
Alignment:
| Q |
115 |
ttagtacaaaatactgtaaaattacaactatagtcatgctatagcactgtt |
165 |
Q |
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||||||||||||| ||| |||| ||| ||||||| |||||||||||||||| |
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| T |
13125396 |
ttagtacaaaatattgtcaaataacagctatagtgatgctatagcactgtt |
13125346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 426 - 467
Target Start/End: Original strand, 33577656 - 33577697
Alignment:
| Q |
426 |
tgggaaataaggtgaatttatttgtatttgctaatgtattga |
467 |
Q |
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| T |
33577656 |
tgggaaataaggtgattttagttttatttgctaatgtattga |
33577697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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