View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10458_low_20 (Length: 250)
Name: NF10458_low_20
Description: NF10458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10458_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 49684567 - 49684335
Alignment:
| Q |
18 |
aggaatatgcgatactaatatgctaaaagaccataacatccattagttttttaggaatatctaa-----------aaaattgcttttctcattcaattgc |
106 |
Q |
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| T |
49684567 |
aggaatatgcgatactaatatgctaaaagaccataacatccattagttttttaggaatatctaatagtatgctaaaaaattgcttttctcattcaattgc |
49684468 |
T |
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| Q |
107 |
aatgtaattgtttattttgaatttctcatttattggttcttttgcagacatgagaatgagcttctccaagctgctaatcaaccccttcctgatgacgatg |
206 |
Q |
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| T |
49684467 |
aatgtaattgtttattttgaatctctcatttattggttcttttgcagacatgagaatgagcttctccaagctgctaatcaaccccttcctgatgacgatg |
49684368 |
T |
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| Q |
207 |
atgatgcttttgagtaaagcttttgtgtctctg |
239 |
Q |
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| T |
49684367 |
atgatgcttttgagtaaagcttttgtgtctctg |
49684335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 49689951 - 49689735
Alignment:
| Q |
18 |
aggaatatgcgatactaatatgctaaaagaccataacatccattagtttttt-aggaatatc-----------taaaaaattgcttttctcattcaattg |
105 |
Q |
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|||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||| |
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| T |
49689951 |
aggaatatgcaatactagtatgctaaaagaccataacatccattagtttttttaggaatatcaaatagtatgctaaaacattgcttttctcattcaattg |
49689852 |
T |
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| Q |
106 |
caatgtaattgtttattttgaatttctcatttattggttcttttgcagacatgagaatgagcttctccaagctgctaatcaaccccttcctgatgacgat |
205 |
Q |
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| T |
49689851 |
cagtgtaattgtttatttttaatttctcatttattggttcttttgcagacaagagaatgagcttctccaagctgctaatcaaccccttcctgatgacgat |
49689752 |
T |
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| Q |
206 |
gatgatgcttttgagta |
222 |
Q |
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| T |
49689751 |
gatgatacatttgagta |
49689735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 119 - 222
Target Start/End: Complemental strand, 49694702 - 49694598
Alignment:
| Q |
119 |
tattttgaatttctcatttatt-ggttcttttgcagacatgagaatgagcttctccaagctgctaatcaaccccttcctgatgacgatgatgatgctttt |
217 |
Q |
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|||||||||||||| || |||| ||| |||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| || || ||||| ||| |
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| T |
49694702 |
tattttgaatttcttatgtatttggtgcttttgcagacatgagaatgagcttcaacaagctgctaaccaaccacttcctgatgatgacgacgatgcattt |
49694603 |
T |
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| Q |
218 |
gagta |
222 |
Q |
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||||| |
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| T |
49694602 |
gagta |
49694598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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