View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10458_low_22 (Length: 243)
Name: NF10458_low_22
Description: NF10458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10458_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 44642710 - 44642487
Alignment:
| Q |
18 |
agttctgcttttactttacatgcagaaacagtggactagacaatctattttggattacagtagtttgtctgtctgtgtatgcttaacagtttatgcgtgc |
117 |
Q |
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| T |
44642710 |
agttctgcttttactttacatgcagaaacagtggactagacaatctattttggattacagtagtttgtctgtctgtgtatgcttaacagtttatgcgtgc |
44642611 |
T |
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| Q |
118 |
atttcattacaatttcaaattatcatctcaatcaatttgttagaaaaattattaagtctttcttcaacaatacagctaagttaataatgagatgctaggt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44642610 |
atttcattacaatttcaaattatcatctcaatcaatttgttagaaaaattattaagtctttcttcaacaatacagctaagttaataatgagatgctaggt |
44642511 |
T |
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| Q |
218 |
ggtagattaatttcctttgcttct |
241 |
Q |
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||||||||||||| ||||| |||| |
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| T |
44642510 |
ggtagattaatttgctttgattct |
44642487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 59 - 225
Target Start/End: Complemental strand, 44687539 - 44687372
Alignment:
| Q |
59 |
aatctattttggattacagtagtttgtctgtctgtgtatgctt-aacagtttatgcgtgcatttcattacaatttcaaattatc---atctcaatcaatt |
154 |
Q |
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| T |
44687539 |
aatctattttgcattgcagtagtttctttgtctctgtatgttttaacagtttatgcatgcatttcgttacaatttcaaattatctacatctcaatcaatt |
44687440 |
T |
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| Q |
155 |
tgttagaaaaattattaagtctttcttcaacaatacagctaagttaataatgagatgctaggtggtagatt |
225 |
Q |
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| T |
44687439 |
taatagaaaaacta---agtctttcttcaacaatacggctaagttaataatgagatgctaggtggtagatt |
44687372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 147 - 225
Target Start/End: Complemental strand, 44668121 - 44668046
Alignment:
| Q |
147 |
aatcaatttgttagaaaaattattaagtctttcttcaacaatacagctaagttaataatgagatgctaggtggtagatt |
225 |
Q |
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| T |
44668121 |
aatcaatttattagaaaaacta---agtctttcttcaacaatacggctaagttaataatgagatgctaggtggtagatt |
44668046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 119 - 225
Target Start/End: Complemental strand, 45094956 - 45094849
Alignment:
| Q |
119 |
tttcattacaatttcaaatt----atcatctcaatcaatttgttagaaaaattattaagtctttcttcaacaatacagctaagttaataatgagatgcta |
214 |
Q |
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| T |
45094956 |
tttcatgacaatttcaaatttatcaacatctcaattaatttgttagaaaaatta---agtccttcttcaacaatgcggataagttaataatgagatggta |
45094860 |
T |
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| Q |
215 |
ggtggtagatt |
225 |
Q |
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||| ||||||| |
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| T |
45094859 |
ggtagtagatt |
45094849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 57 - 165
Target Start/End: Complemental strand, 44668255 - 44668143
Alignment:
| Q |
57 |
acaatctattttggattacagtagtttgtctgtctgtgtatgctt-aacagtttatgcgtgcatttcattacaatttcaaattat---catctcaatcaa |
152 |
Q |
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||||||||||||| ||| | ||||||| | ||||| |||||| || || ||||||||| ||||| || ||||||||||||||||| |||||||||||| |
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| T |
44668255 |
acaatctattttgcattgctgtagtttctttgtctctgtatgttttaatagtttatgcatgcatatcgttacaatttcaaattatctacatctcaatcaa |
44668156 |
T |
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| Q |
153 |
tttgttagaaaaa |
165 |
Q |
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||| ||||||||| |
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| T |
44668155 |
tttattagaaaaa |
44668143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 45095066 - 45095036
Alignment:
| Q |
18 |
agttctgcttttactttacatgcagaaacag |
48 |
Q |
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| T |
45095066 |
agttctgcttttactttacatgcagaaacag |
45095036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 19566424 - 19566381
Alignment:
| Q |
182 |
caacaatacagctaagttaataatgagatgctaggtggtagatt |
225 |
Q |
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||||||| |||||||||||||||||||| |||||||||||||| |
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| T |
19566424 |
caacaatgtagctaagttaataatgagatactaggtggtagatt |
19566381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 23684850 - 23684893
Alignment:
| Q |
182 |
caacaatacagctaagttaataatgagatgctaggtggtagatt |
225 |
Q |
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||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
23684850 |
caacaatgtagctaagttaataatgagatgctaggaggtagatt |
23684893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 8831398 - 8831353
Alignment:
| Q |
180 |
ttcaacaatacagctaagttaataatgagatgctaggtggtagatt |
225 |
Q |
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||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
8831398 |
ttcaacaatgtagctaagttaataatgagatgctaggcagtagatt |
8831353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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