View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10458_low_23 (Length: 240)
Name: NF10458_low_23
Description: NF10458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10458_low_23 |
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| [»] chr1 (3 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 11774770 - 11774546
Alignment:
| Q |
18 |
catacgagcaaaataaatcaaccataatgtagcataaactatccatcagattacaattaagaaactgaattgattcactcaataaatggccatcagagca |
117 |
Q |
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| T |
11774770 |
catacgagcaaaataaatcaaccataatgtagcataaactattcatcagattacaattaagaaactgaattgattcactcaataaatggccatcagagca |
11774671 |
T |
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| Q |
118 |
aattagatcaataaatgacattgcaattcattaagaaacataattgatttca-aaaatattaatgaacaaaaattgatgtatctagttcaaaattcag-t |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||| | |
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| T |
11774670 |
aattagatcaataaatgacattgcaattcattaagaaacataattgatttcaaaaaatattaatgaacaaaagttgacgtatctagttcaaaattcagtt |
11774571 |
T |
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| Q |
216 |
cagttacatcaatttttgttgacct |
240 |
Q |
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| T |
11774570 |
taattacatcaatttttgttgacct |
11774546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 239
Target Start/End: Original strand, 16448146 - 16448204
Alignment:
| Q |
182 |
aacaaaaattgatgtatctagttcaaaattcagt-cagttacatcaatttttgttgacc |
239 |
Q |
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||||||| || |||||||| |||||||||||||| ||| |||||||| ||||||||||| |
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| T |
16448146 |
aacaaaagtttatgtatctggttcaaaattcagtccagatacatcaacttttgttgacc |
16448204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 216
Target Start/End: Original strand, 47777519 - 47777553
Alignment:
| Q |
182 |
aacaaaaattgatgtatctagttcaaaattcagtc |
216 |
Q |
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| T |
47777519 |
aacaaaagttgatgtatctagttcaaaattcagtc |
47777553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 240
Target Start/End: Original strand, 32211401 - 32211460
Alignment:
| Q |
182 |
aacaaaaattgatgtatctagttcaaaattcagt-cagttacatcaatttttgttgacct |
240 |
Q |
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||||||||||||||||||||||| |||||||||| || ||||| |||||||||||||| |
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| T |
32211401 |
aacaaaaattgatgtatctagttaaaaattcagtccaaatacattcatttttgttgacct |
32211460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 216
Target Start/End: Original strand, 32114513 - 32114547
Alignment:
| Q |
182 |
aacaaaaattgatgtatctagttcaaaattcagtc |
216 |
Q |
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| T |
32114513 |
aacaaaaattgatgtatctagttaaaaattcagtc |
32114547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 216
Target Start/End: Original strand, 35031039 - 35031073
Alignment:
| Q |
182 |
aacaaaaattgatgtatctagttcaaaattcagtc |
216 |
Q |
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| T |
35031039 |
aacaaaaattgatgtatctagttaaaaattcagtc |
35031073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 216
Target Start/End: Complemental strand, 20848166 - 20848132
Alignment:
| Q |
182 |
aacaaaaattgatgtatctagttcaaaattcagtc |
216 |
Q |
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||||||||||||||||||||||| ||||||||||| |
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| T |
20848166 |
aacaaaaattgatgtatctagttaaaaattcagtc |
20848132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 216
Target Start/End: Original strand, 42507393 - 42507427
Alignment:
| Q |
182 |
aacaaaaattgatgtatctagttcaaaattcagtc |
216 |
Q |
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||||||| ||||||||||||||||||||||||||| |
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| T |
42507393 |
aacaaaagttgatgtatctagttcaaaattcagtc |
42507427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 216
Target Start/End: Complemental strand, 51406765 - 51406731
Alignment:
| Q |
182 |
aacaaaaattgatgtatctagttcaaaattcagtc |
216 |
Q |
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||||||||||||||||||||||| ||||||||||| |
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| T |
51406765 |
aacaaaaattgatgtatctagttaaaaattcagtc |
51406731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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