View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10458_low_3 (Length: 630)
Name: NF10458_low_3
Description: NF10458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10458_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 260 - 578
Target Start/End: Original strand, 38448758 - 38449079
Alignment:
| Q |
260 |
ttggaactcattattattgattcctaatcatcctttatttccatgtcatcaaaatggtttctattagcgtacattccaaagtcatttcgaagcttctgat |
359 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
38448758 |
ttggaactcattattattgattcctaatcatcctttatttccatgtcatcaaaatggtttctattagcgtaaattccaaagtcatttccaagcttctgat |
38448857 |
T |
|
| Q |
360 |
ttaagaatgttactat---tggagaaattgttacgttcagcatatgtttcagaacttctctcaaaacaatgagagattcttctctgaagttagggacagt |
456 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38448858 |
ttaagaatgttactatatttggagaaattgttacgttcagcatatgtttcagaacttctctcaaaacaatgagagattcttctctgaagttagggacagt |
38448957 |
T |
|
| Q |
457 |
atctgctactaaaaggttgaacttgataggacctttggtgcagcattgttgcaatatcaagttgctcctattgctgaagttatattagaaaaattgatga |
556 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
38448958 |
atctgctactaaaaggttgaacttgataggacctttggtgcagcattgttgcaatatcaagttgctcctattgctgaagttatattagaaaaatggatga |
38449057 |
T |
|
| Q |
557 |
atcgagatgttgaggaagcatg |
578 |
Q |
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|||||||||||||||||||||| |
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| T |
38449058 |
atcgagatgttgaggaagcatg |
38449079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 38448425 - 38448673
Alignment:
| Q |
1 |
tgatttctgaaggactgtagacgagagcaagttagcttataatgtttgaaatgcaagttttctttgttttgttattttattttcctgagaattgagttgt |
100 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
38448425 |
tgatttctgaaggattgtagacgagagcaagttagcttatagtgtttgaaatgaaagttttcttggttttgttattttgttttcctgagaattgagttgt |
38448524 |
T |
|
| Q |
101 |
agtattaatgtttctttctattgaatgtattctactttatgcact----atgtcagtattctttttccttcaccttattgcttattaaatgtgaattatt |
196 |
Q |
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||||| |||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38448525 |
agtatgaatgtttctttctatttaatgtatactactttatgcactatgcatgtcagtattctttttccttcaccttattgcttattaaatgtgaattatt |
38448624 |
T |
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| Q |
197 |
atgctttatggtcatactattgtggctgctgagaaggaaaaatcatggc |
245 |
Q |
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| T |
38448625 |
atgctttatggtcatactattgtggctgctgagaaggaaaaatcatggc |
38448673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 455 - 578
Target Start/End: Original strand, 38440567 - 38440691
Alignment:
| Q |
455 |
gtatctgctactaaaaggttgaacttgataggacct-ttggtgcagcattgttgcaatatcaagttgctcctattgctgaagttatattagaaaaattga |
553 |
Q |
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||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |
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| T |
38440567 |
gtatctgctgctacaaggttgaacttgataggaccccttggtgcagcattgttgcaacatcaagttgctcctattgctgaagttatattagaaaaatgga |
38440666 |
T |
|
| Q |
554 |
tgaatcgagatgttgaggaagcatg |
578 |
Q |
| |
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||||||| ||||||||||||||||| |
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| T |
38440667 |
tgaatcgtgatgttgaggaagcatg |
38440691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 411 - 460
Target Start/End: Original strand, 38440418 - 38440467
Alignment:
| Q |
411 |
cttctctcaaaacaatgagagattcttctctgaagttagggacagtatct |
460 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
38440418 |
cttctctcaaaacaatgagagattcttctatgaagttagggactgtatct |
38440467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 585 - 621
Target Start/End: Original strand, 38449112 - 38449148
Alignment:
| Q |
585 |
ttgccatggttacttgttttcaagactgttttcatct |
621 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
38449112 |
ttgccatggttacttgttttcaagactgttttcatct |
38449148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 589 - 621
Target Start/End: Original strand, 38440729 - 38440761
Alignment:
| Q |
589 |
catggttacttgttttcaagactgttttcatct |
621 |
Q |
| |
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||||||||||||||||||||| ||||||||||| |
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| T |
38440729 |
catggttacttgttttcaagattgttttcatct |
38440761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 129 - 190
Target Start/End: Complemental strand, 53350764 - 53350702
Alignment:
| Q |
129 |
attctactttatgcactatgtcagtattctttt-tccttcaccttattgcttattaaatgtga |
190 |
Q |
| |
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||||||||||||||| |||| |||| || |||| |||||||| |||||||||||||||||||| |
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| T |
53350764 |
attctactttatgcaatatgccagtttttttttctccttcacgttattgcttattaaatgtga |
53350702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 372
Target Start/End: Original strand, 38448087 - 38448130
Alignment:
| Q |
329 |
tacattccaaagtcatttcgaagcttctgatttaagaatgttac |
372 |
Q |
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||||||| ||||||||||| ||||||||| |||||||||||||| |
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| T |
38448087 |
tacattctaaagtcatttcaaagcttctgttttaagaatgttac |
38448130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 372
Target Start/End: Complemental strand, 38550182 - 38550139
Alignment:
| Q |
329 |
tacattccaaagtcatttcgaagcttctgatttaagaatgttac |
372 |
Q |
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||||||| ||||||||||| ||||||||| |||||||||||||| |
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| T |
38550182 |
tacattctaaagtcatttcaaagcttctgttttaagaatgttac |
38550139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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