View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10458_low_4 (Length: 596)

Name: NF10458_low_4
Description: NF10458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10458_low_4
NF10458_low_4
[»] chr8 (18 HSPs)
chr8 (205-456)||(2116266-2116524)
chr8 (398-452)||(3955826-3955880)
chr8 (398-452)||(19439585-19439639)
chr8 (398-452)||(19575734-19575788)
chr8 (398-452)||(15358119-15358173)
chr8 (205-250)||(20812557-20812602)
chr8 (89-171)||(1487606-1487688)
chr8 (398-452)||(13636572-13636626)
chr8 (398-452)||(13736985-13737039)
chr8 (205-250)||(31666283-31666328)
chr8 (138-201)||(37562294-37562357)
chr8 (130-200)||(42346083-42346153)
chr8 (205-250)||(31251868-31251911)
chr8 (407-452)||(33099137-33099182)
chr8 (204-238)||(29012592-29012626)
chr8 (204-238)||(43326622-43326656)
chr8 (164-200)||(35943851-35943887)
chr8 (204-248)||(37513249-37513293)
[»] chr7 (12 HSPs)
chr7 (205-456)||(45657460-45657715)
chr7 (398-452)||(18534805-18534859)
chr7 (398-451)||(27542191-27542244)
chr7 (89-162)||(19736950-19737023)
chr7 (151-200)||(42607811-42607860)
chr7 (205-248)||(16871463-16871506)
chr7 (151-201)||(32548672-32548722)
chr7 (146-200)||(40258728-40258782)
chr7 (138-200)||(40320396-40320458)
chr7 (150-200)||(42607081-42607131)
chr7 (151-200)||(29060738-29060787)
chr7 (130-195)||(30401681-30401746)
[»] chr4 (26 HSPs)
chr4 (14-149)||(32894367-32894502)
chr4 (294-456)||(22422934-22423099)
chr4 (14-149)||(49346868-49347015)
chr4 (294-438)||(39843341-39843487)
chr4 (398-452)||(40547116-40547170)
chr4 (398-456)||(8720387-8720445)
chr4 (206-250)||(39843515-39843559)
chr4 (130-200)||(34154794-34154864)
chr4 (204-250)||(53921110-53921156)
chr4 (151-200)||(33370874-33370923)
chr4 (411-451)||(33633615-33633655)
chr4 (129-200)||(22499098-22499169)
chr4 (150-200)||(38010846-38010896)
chr4 (138-200)||(39429923-39429985)
chr4 (205-250)||(42857643-42857686)
chr4 (295-336)||(8720281-8720322)
chr4 (129-194)||(22499951-22500016)
chr4 (151-200)||(33369909-33369958)
chr4 (151-200)||(38009284-38009333)
chr4 (407-452)||(44937575-44937620)
chr4 (207-244)||(47499452-47499489)
chr4 (152-200)||(17512206-17512254)
chr4 (208-248)||(22422864-22422904)
chr4 (148-200)||(25970106-25970158)
chr4 (412-452)||(41327088-41327128)
chr4 (204-248)||(51075049-51075093)
[»] chr2 (11 HSPs)
chr2 (14-149)||(17947603-17947738)
chr2 (294-456)||(27869149-27869314)
chr2 (294-456)||(37472401-37472578)
chr2 (67-171)||(26021037-26021140)
chr2 (151-200)||(34617653-34617702)
chr2 (207-250)||(28634545-28634588)
chr2 (205-244)||(37472328-37472367)
chr2 (145-200)||(11872080-11872135)
chr2 (130-200)||(20991997-20992067)
chr2 (411-452)||(9224650-9224691)
chr2 (411-452)||(9272519-9272560)
[»] chr3 (21 HSPs)
chr3 (294-456)||(52796515-52796680)
chr3 (294-456)||(52099516-52099689)
chr3 (205-250)||(24346137-24346182)
chr3 (205-250)||(28255143-28255188)
chr3 (205-250)||(43885020-43885065)
chr3 (67-171)||(50305649-50305752)
chr3 (205-250)||(37516103-37516148)
chr3 (205-250)||(39128183-39128228)
chr3 (205-250)||(50675594-50675639)
chr3 (209-248)||(37324905-37324944)
chr3 (204-247)||(44384457-44384500)
chr3 (151-200)||(33455780-33455829)
chr3 (412-452)||(43659575-43659615)
chr3 (205-244)||(52796717-52796756)
chr3 (377-454)||(24696241-24696319)
chr3 (130-200)||(43768737-43768807)
chr3 (138-200)||(45297549-45297611)
chr3 (130-200)||(53030910-53030980)
chr3 (151-200)||(33454866-33454915)
chr3 (89-158)||(49086119-49086188)
chr3 (204-248)||(39692524-39692568)
[»] chr6 (7 HSPs)
chr6 (294-456)||(251981-252146)
chr6 (310-456)||(5045650-5045799)
chr6 (205-248)||(5045535-5045578)
chr6 (129-200)||(25067827-25067898)
chr6 (129-200)||(34035021-34035092)
chr6 (205-247)||(251908-251950)
chr6 (204-234)||(567113-567143)
[»] chr1 (15 HSPs)
chr1 (294-456)||(10615988-10616152)
chr1 (294-455)||(11240417-11240580)
chr1 (294-358)||(2167603-2167667)
chr1 (205-250)||(45708052-45708097)
chr1 (205-250)||(10616180-10616225)
chr1 (67-171)||(3789254-3789357)
chr1 (154-200)||(2687729-2687775)
chr1 (147-200)||(41884224-41884277)
chr1 (205-247)||(11240611-11240651)
chr1 (206-248)||(42596400-42596442)
chr1 (386-452)||(45337954-45338020)
chr1 (205-250)||(41122692-41122737)
chr1 (204-248)||(8261518-8261562)
chr1 (204-248)||(17683090-17683134)
chr1 (129-193)||(47334877-47334941)
[»] scaffold0072 (2 HSPs)
scaffold0072 (310-456)||(46749-46898)
scaffold0072 (205-248)||(46635-46678)
[»] chr5 (11 HSPs)
chr5 (52-195)||(2522687-2522833)
chr5 (204-248)||(29993144-29993188)
chr5 (130-200)||(9923388-9923458)
chr5 (204-250)||(12464201-12464247)
chr5 (151-201)||(35262451-35262501)
chr5 (151-200)||(32943517-32943566)
chr5 (151-200)||(32944483-32944532)
chr5 (131-200)||(35263288-35263357)
chr5 (218-250)||(24905380-24905412)
chr5 (152-200)||(26711568-26711616)
chr5 (152-200)||(26981305-26981353)
[»] scaffold0069 (1 HSPs)
scaffold0069 (209-250)||(36075-36116)


Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 205 - 456
Target Start/End: Complemental strand, 2116524 - 2116266
Alignment:
Q  205 agagaaatagaagagagagaagtgttgattatttataaaagtactacaacaaagtgaatagattgaaaatataatttactnnnnnnnnn-----ttgaga 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              ||||||    
T  2116524 agagaaatagaagagagagaagtgttgattatttataaaagtactacaacaaagtgaatagattgaaaatataatttactcaaaaataaataaattgaga 2116425  T
Q  300 atataatattttaatgcaagggcaataatggaacaacaaagtgaatagtcttctctctc--atcttttctctattgcgaggagaaaccaaaaatgatgga 397  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || | ||||||||||||||||||||||||||||||||||    
T  2116424 atataatattttaatgcaagggcaataatggaacaacaaagtgaatagtcttctctctctcatttcttctctattgcgaggagaaaccaaaaatgatgga 2116325  T
Q  398 tcccactactttttaatctctattccctatttctcttcattccaaacaagagaaagttg 456  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2116324 tcccactactttttaatctctcttccctatttctcttcattccaaacaagagaaagttg 2116266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 398 - 452
Target Start/End: Original strand, 3955826 - 3955880
Alignment:
Q  398 tcccactactttttaatctctattccctatttctcttcattccaaacaagagaaa 452  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  3955826 tcccactactttttaatctctcttccctatttctcttcattccaaacaagagaaa 3955880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 398 - 452
Target Start/End: Original strand, 19439585 - 19439639
Alignment:
Q  398 tcccactactttttaatctctattccctatttctcttcattccaaacaagagaaa 452  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  19439585 tcccactactttttaatctctcttccctatttctcttcattccaaacaagagaaa 19439639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 398 - 452
Target Start/End: Original strand, 19575734 - 19575788
Alignment:
Q  398 tcccactactttttaatctctattccctatttctcttcattccaaacaagagaaa 452  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  19575734 tcccactactttttaatctctcttccctatttctcttcattccaaacaagagaaa 19575788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 398 - 452
Target Start/End: Complemental strand, 15358173 - 15358119
Alignment:
Q  398 tcccactactttttaatctctattccctatttctcttcattccaaacaagagaaa 452  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  15358173 tcccactactttttaatctctcttccctatttctcttcattccaaacaaaagaaa 15358119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 20812602 - 20812557
Alignment:
Q  205 agagaaatagaagagagagaagtgttgattatttataaaagtacta 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  20812602 agagaaatagaagagagagaagtgttgattatttataaaagtacta 20812557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 89 - 171
Target Start/End: Complemental strand, 1487688 - 1487606
Alignment:
Q  89 aaatatagtgatgagaatgtatgataatagtgtgtgttagatttaatccaatggttgaaatcaactttcctatgatgggaaac 171  Q
    |||||||||| ||||| |||||||||||||| |||  | ||||||||  ||||||| ||||||||||||||||||| ||||||    
T  1487688 aaatatagtgttgagagtgtatgataatagtatgtacttgatttaatttaatggttaaaatcaactttcctatgataggaaac 1487606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 398 - 452
Target Start/End: Complemental strand, 13636626 - 13636572
Alignment:
Q  398 tcccactactttttaatctctattccctatttctcttcattccaaacaagagaaa 452  Q
    ||||||||||||||||| ||| || ||||||||||||||||||||||||||||||    
T  13636626 tcccactactttttaatatctctttcctatttctcttcattccaaacaagagaaa 13636572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 398 - 452
Target Start/End: Complemental strand, 13737039 - 13736985
Alignment:
Q  398 tcccactactttttaatctctattccctatttctcttcattccaaacaagagaaa 452  Q
    ||||||||||||||||| ||| || ||||||||||||||||||||||||||||||    
T  13737039 tcccactactttttaatatctctttcctatttctcttcattccaaacaagagaaa 13736985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 31666283 - 31666328
Alignment:
Q  205 agagaaatagaagagagagaagtgttgattatttataaaagtacta 250  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  31666283 agagaaatagaagagagagaagtgttgattatttataaaattacta 31666328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 138 - 201
Target Start/End: Complemental strand, 37562357 - 37562294
Alignment:
Q  138 aatggttgaaatcaactttcctatgatgggaaacaattatcttttcccatgctaaaccccaccg 201  Q
    ||||||| ||||  ||||||||||| |||||||||||| || ||||||||||||||||||||||    
T  37562357 aatggttaaaattgactttcctatggtgggaaacaattctcctttcccatgctaaaccccaccg 37562294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 42346083 - 42346153
Alignment:
Q  130 tttaatccaatggttgaaatcaactttcctatgatgggaaacaattatcttttcccatgctaaaccccacc 200  Q
    ||||||| |||||||||||  |||||||| |||||||||||||| | ||  ||||||||||||||||||||    
T  42346083 tttaatctaatggttgaaaaaaactttcccatgatgggaaacaactctccattcccatgctaaaccccacc 42346153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 31251911 - 31251868
Alignment:
Q  205 agagaaatagaagagagagaagtgttgattatttataaaagtacta 250  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||    
T  31251911 agagaaatagaagagaga--agtgttgattatttataaaagtacta 31251868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 407 - 452
Target Start/End: Complemental strand, 33099182 - 33099137
Alignment:
Q  407 tttttaatctctattccctatttctcttcattccaaacaagagaaa 452  Q
    |||| ||||||| |||||||||||||| ||||||||||||||||||    
T  33099182 ttttaaatctctcttccctatttctctgcattccaaacaagagaaa 33099137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 204 - 238
Target Start/End: Original strand, 29012592 - 29012626
Alignment:
Q  204 aagagaaatagaagagagagaagtgttgattattt 238  Q
    |||||||||||||||||||||||||||||| ||||    
T  29012592 aagagaaatagaagagagagaagtgttgataattt 29012626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 204 - 238
Target Start/End: Original strand, 43326622 - 43326656
Alignment:
Q  204 aagagaaatagaagagagagaagtgttgattattt 238  Q
    ||||||||||||||||||||||||||| |||||||    
T  43326622 aagagaaatagaagagagagaagtgttaattattt 43326656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 35943851 - 35943887
Alignment:
Q  164 tgggaaacaattatcttttcccatgctaaaccccacc 200  Q
    |||||||||||| || |||||||||||||||||||||    
T  35943851 tgggaaacaattctcctttcccatgctaaaccccacc 35943887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 204 - 248
Target Start/End: Complemental strand, 37513293 - 37513249
Alignment:
Q  204 aagagaaatagaagagagagaagtgttgattatttataaaagtac 248  Q
    ||||||||||||  ||||||||||||||||||||| | |||||||    
T  37513293 aagagaaatagagaagagagaagtgttgattatttttgaaagtac 37513249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 171; Significance: 2e-91; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 205 - 456
Target Start/End: Complemental strand, 45657715 - 45657460
Alignment:
Q  205 agagaaatagaagagagagaagtgttgattatttataaaagtactacaacaaagtgaatagattgaaaatataatttactnnnnnnnnn--ttgagaata 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||           |||||||||    
T  45657715 agagaaatagaagagagagaagtgttgattatttataaaagtactacaataaagtgaatagattgagaatataatttgctcaaaaaaaaatttgagaata 45657616  T
Q  303 taatattttaatgcaagggcaataatggaacaacaaagtgaatagtcttctctctc--atcttttctctattgcgaggagaaaccaaaaatgatggatcc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || | |||| |||||| ||||||||||||||||||||| |||    
T  45657615 taatattttaatgcaagggcaataatggaacaacaaagtgaatagtcttctctctcccatttcttctatattgcaaggagaaaccaaaaatgatgggtcc 45657516  T
Q  401 cactactttttaatctctattccctatttctcttcattccaaacaagagaaagttg 456  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  45657515 cactactttttaatctctcttccctatttctcttcattccaaacaagagaaagttg 45657460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 398 - 452
Target Start/End: Original strand, 18534805 - 18534859
Alignment:
Q  398 tcccactactttttaatctctattccctatttctcttcattccaaacaagagaaa 452  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  18534805 tcccactattttttaatctctcttccctatttctcttcattccaaacaagagaaa 18534859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 398 - 451
Target Start/End: Complemental strand, 27542244 - 27542191
Alignment:
Q  398 tcccactactttttaatctctattccctatttctcttcattccaaacaagagaa 451  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  27542244 tcccattactttttaatctctcttccctatttctcttcattccaaacaagagaa 27542191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 89 - 162
Target Start/End: Complemental strand, 19737023 - 19736950
Alignment:
Q  89 aaatatagtgatgagaatgtatgataatagtgtgtgttagatttaatccaatggttgaaatcaactttcctatg 162  Q
    |||| ||||| ||||| |||||||||| ||||||| ||  |||| |||||||||| ||||| ||||||||||||    
T  19737023 aaatttagtggtgagagtgtatgataagagtgtgtttttcatttcatccaatggtggaaataaactttcctatg 19736950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 42607811 - 42607860
Alignment:
Q  151 aactttcctatgatgggaaacaattatcttttcccatgctaaaccccacc 200  Q
    |||||||||||||||||||||||||  | ||| |||||||||||||||||    
T  42607811 aactttcctatgatgggaaacaattccccttttccatgctaaaccccacc 42607860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 248
Target Start/End: Complemental strand, 16871506 - 16871463
Alignment:
Q  205 agagaaatagaagagagagaagtgttgattatttataaaagtac 248  Q
    |||||||||||||||| ||||||||| ||||| |||||||||||    
T  16871506 agagaaatagaagagaaagaagtgttaattatatataaaagtac 16871463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 151 - 201
Target Start/End: Original strand, 32548672 - 32548722
Alignment:
Q  151 aactttcctatgatgggaaacaattatcttttcccatgctaaaccccaccg 201  Q
    |||||||| ||| |||||||||| |||| |||||||| |||||||||||||    
T  32548672 aactttcccatggtgggaaacaagtatcatttcccatactaaaccccaccg 32548722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 40258728 - 40258782
Alignment:
Q  146 aaatcaactttcctatgatgggaaacaattatcttttcccatgctaaaccccacc 200  Q
    ||||| ||||||| ||| || |||||||||||| ||||||||||||||| |||||    
T  40258728 aaatctactttcccatggtgagaaacaattatcatttcccatgctaaactccacc 40258782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 138 - 200
Target Start/End: Original strand, 40320396 - 40320458
Alignment:
Q  138 aatggttgaaatcaactttcctatgatgggaaacaattatcttttcccatgctaaaccccacc 200  Q
    |||||||||||  |||||| | ||| |||||||||| | || |||||||||||||||||||||    
T  40320396 aatggttgaaaaaaacttttccatggtgggaaacaactctcctttcccatgctaaaccccacc 40320458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 150 - 200
Target Start/End: Complemental strand, 42607131 - 42607081
Alignment:
Q  150 caactttcctatgatgggaaacaattatcttttcccatgctaaaccccacc 200  Q
    ||||||||| ||| ||||||||||||  | |||||||||||||||||||||    
T  42607131 caactttcccatggtgggaaacaattcccctttcccatgctaaaccccacc 42607081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 29060738 - 29060787
Alignment:
Q  151 aactttcctatgatgggaaacaattatcttttcccatgctaaaccccacc 200  Q
    |||||||| ||| ||||||||||||  | |||||||||||||||||||||    
T  29060738 aactttcccatggtgggaaacaattcccctttcccatgctaaaccccacc 29060787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 195
Target Start/End: Complemental strand, 30401746 - 30401681
Alignment:
Q  130 tttaatccaatggttgaaatcaactttcctatgatgggaaacaattatcttttcccatgctaaacc 195  Q
    ||||||| |||||||||||  |||||||| |||||||||| ||||| ||  ||||||| |||||||    
T  30401746 tttaatctaatggttgaaaaaaactttcccatgatgggaatcaattctccattcccatactaaacc 30401681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 128; Significance: 7e-66; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 14 - 149
Target Start/End: Original strand, 32894367 - 32894502
Alignment:
Q  14 agatgaagattaagaaaagagttgaccgcaagtggggaagagaagaatggttgtggagaaagattgtatgaaaataaatatagtgatgagaatgtatgat 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32894367 agatgaagattaagaaaagagttgaccgcaagtggggaagagaagaatggttgtggagaaagattgtatgaaaataaatatagtgatgagaatgtatgat 32894466  T
Q  114 aatagtgtgtgttagatttaatccaatggttgaaat 149  Q
    |||||||||||| ||||||||||||||||| |||||    
T  32894467 aatagtgtgtgtcagatttaatccaatggtagaaat 32894502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 294 - 456
Target Start/End: Original strand, 22422934 - 22423099
Alignment:
Q  294 ttgagaatataatattttaatgcaagggcaataatggaacaacaaagtgaatagtcttctctctcatctt--ttctctattgcgaggagaaaccaaaaa- 390  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||  |||||||||| ||||||||||||||||     
T  22422934 ttgagaatataatattttaatgcaagggcaataatggaacaacaaagtgaatagtcttctctctcccctttcttctctattgtgaggagaaaccaaaaag 22423033  T
Q  391 tgatggatcccactactttttaatctctattccctatttctcttcattccaaacaagagaaagttg 456  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  22423034 tgatggttcccactactttttaatctctcttccctatttctcttcattccaaacaagagaaagttg 22423099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 14 - 149
Target Start/End: Original strand, 49346868 - 49347015
Alignment:
Q  14 agatgaagattaagaaaagagttgaccgcaagtggggaagagaagaatggttgtggagaaagattgtatg------------aaaataaatatagtgatg 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||    
T  49346868 agatgaagattaagaaaagagttgaccgcaagtggggaagagaagaatggttgtggagaaagattgtatgaaaataaatataaaaataaatatagtgatg 49346967  T
Q  102 agaatgtatgataatagtgtgtgttagatttaatccaatggttgaaat 149  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||    
T  49346968 agaatgtatgataatagtgtgtgtcagatttaatccaatggtagaaat 49347015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 294 - 438
Target Start/End: Complemental strand, 39843487 - 39843341
Alignment:
Q  294 ttgagaatataatattttaatgcaagggcaataatggaacaacaaagtgaatagtcttctctct--catcttttctctattgcgaggagaaaccaaaaa- 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| | |||||| ||| ||||||||||||||||     
T  39843487 ttgagaatataatattttaatgcaagggcaataatggaacaacaaagtgaatagtcttctctctcccatttcttctctgttgtgaggagaaaccaaaaag 39843388  T
Q  391 tgatggatcccactactttttaatctctattccctatttctcttcatt 438  Q
    |||||| ||||||||||||||||||||| ||||||||||||| |||||    
T  39843387 tgatgg-tcccactactttttaatctctcttccctatttctcctcatt 39843341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 398 - 452
Target Start/End: Complemental strand, 40547170 - 40547116
Alignment:
Q  398 tcccactactttttaatctctattccctatttctcttcattccaaacaagagaaa 452  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  40547170 tcccactactttttaatctctcttccctatttctcttcattccaaacaagagaaa 40547116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 398 - 456
Target Start/End: Original strand, 8720387 - 8720445
Alignment:
Q  398 tcccactactttttaatctctattccctatttctcttcattccaaacaagagaaagttg 456  Q
    ||||||||||||| ||||||| || |||||||||||||||||||||| |||||||||||    
T  8720387 tcccactacttttaaatctctctttcctatttctcttcattccaaactagagaaagttg 8720445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 39843559 - 39843515
Alignment:
Q  206 gagaaatagaagagagagaagtgttgattatttataaaagtacta 250  Q
    ||||||||||||||||| |||||||||||||||||||||||||||    
T  39843559 gagaaatagaagagagataagtgttgattatttataaaagtacta 39843515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 34154864 - 34154794
Alignment:
Q  130 tttaatccaatggttgaaatcaactttcctatgatgggaaacaattatcttttcccatgctaaaccccacc 200  Q
    ||||||| |||||||||||   ||||||| ||| |||||||||| | ||||||||||||||||||||||||    
T  34154864 tttaatcaaatggttgaaaaatactttcccatggtgggaaacaagtttcttttcccatgctaaaccccacc 34154794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 204 - 250
Target Start/End: Complemental strand, 53921156 - 53921110
Alignment:
Q  204 aagagaaatagaagagagagaagtgttgattatttataaaagtacta 250  Q
    ||||||||||||||||||||||||||||||||| | ||||| |||||    
T  53921156 aagagaaatagaagagagagaagtgttgattatatttaaaaatacta 53921110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 33370874 - 33370923
Alignment:
Q  151 aactttcctatgatgggaaacaattatcttttcccatgctaaaccccacc 200  Q
    |||||||| ||| |||||||||| |||| |||||||||||||||||||||    
T  33370874 aactttcccatggtgggaaacaagtatcctttcccatgctaaaccccacc 33370923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 411 - 451
Target Start/End: Original strand, 33633615 - 33633655
Alignment:
Q  411 taatctctattccctatttctcttcattccaaacaagagaa 451  Q
    |||||||| |||||||||||||| |||||||||||||||||    
T  33633615 taatctctcttccctatttctctgcattccaaacaagagaa 33633655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 200
Target Start/End: Complemental strand, 22499169 - 22499098
Alignment:
Q  129 atttaatccaatggttgaaatcaactttcctatgatgggaaacaattatcttttcccatgctaaaccccacc 200  Q
    |||| ||||||||||| |||  |||||||| ||||||| |||||||| || ||||||||| ||||| |||||    
T  22499169 atttgatccaatggtttaaaataactttcccatgatggaaaacaattctcctttcccatgttaaactccacc 22499098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 150 - 200
Target Start/End: Original strand, 38010846 - 38010896
Alignment:
Q  150 caactttcctatgatgggaaacaattatcttttcccatgctaaaccccacc 200  Q
    ||||||||| ||||||| |||||| |||| |||||||||||||||| ||||    
T  38010846 caactttcccatgatggaaaacaaatatcctttcccatgctaaacctcacc 38010896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 138 - 200
Target Start/End: Original strand, 39429923 - 39429985
Alignment:
Q  138 aatggttgaaatcaactttcctatgatgggaaacaattatcttttcccatgctaaaccccacc 200  Q
    |||||||||||  |||||||| ||| |||||||||| | ||  ||||||||||||||||||||    
T  39429923 aatggttgaaaaaaactttcccatggtgggaaacaactctccattcccatgctaaaccccacc 39429985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 42857643 - 42857686
Alignment:
Q  205 agagaaatagaagagagagaagtgttgattatttataaaagtacta 250  Q
    |||||||||||||||  ||||||||||||||||||||||| |||||    
T  42857643 agagaaatagaagag--agaagtgttgattatttataaaactacta 42857686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 336
Target Start/End: Original strand, 8720281 - 8720322
Alignment:
Q  295 tgagaatataatattttaatgcaagggcaataatggaacaac 336  Q
    |||||||||||||||| ||| ||||||||| |||||||||||    
T  8720281 tgagaatataatatttcaatacaagggcaaaaatggaacaac 8720322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 194
Target Start/End: Original strand, 22499951 - 22500016
Alignment:
Q  129 atttaatccaatggttgaaatcaactttcctatgatgggaaacaattatcttttcccatgctaaac 194  Q
    |||| ||||||||||| |||  |||||||||||| ||| |||||||| || ||||||||| |||||    
T  22499951 atttgatccaatggtttaaaataactttcctatggtggaaaacaattctcctttcccatgttaaac 22500016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 200
Target Start/End: Complemental strand, 33369958 - 33369909
Alignment:
Q  151 aactttcctatgatgggaaacaattatcttttcccatgctaaaccccacc 200  Q
    |||||||| ||| |||||||||| |||| |||||||||||||| ||||||    
T  33369958 aactttcccatggtgggaaacaaatatcatttcccatgctaaatcccacc 33369909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 200
Target Start/End: Complemental strand, 38009333 - 38009284
Alignment:
Q  151 aactttcctatgatgggaaacaattatcttttcccatgctaaaccccacc 200  Q
    |||||| | ||| ||||||||||||||| |||||||||||||| ||||||    
T  38009333 aacttttccatggtgggaaacaattatcctttcccatgctaaatcccacc 38009284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 452
Target Start/End: Original strand, 44937575 - 44937620
Alignment:
Q  407 tttttaatctctattccctatttctcttcattccaaacaagagaaa 452  Q
    |||| ||||||| |||||||||||| | ||||||||||||||||||    
T  44937575 ttttaaatctctcttccctatttctttgcattccaaacaagagaaa 44937620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 244
Target Start/End: Complemental strand, 47499489 - 47499452
Alignment:
Q  207 agaaatagaagagagagaagtgttgattatttataaaa 244  Q
    ||||||| |||||||||||||||||||||| |||||||    
T  47499489 agaaataaaagagagagaagtgttgattatatataaaa 47499452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 152 - 200
Target Start/End: Original strand, 17512206 - 17512254
Alignment:
Q  152 actttcctatgatgggaaacaattatcttttcccatgctaaaccccacc 200  Q
    ||||||| |||||||||||||| ||||  ||| ||||||||||||||||    
T  17512206 actttcccatgatgggaaacaactatccattctcatgctaaaccccacc 17512254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 208 - 248
Target Start/End: Original strand, 22422864 - 22422904
Alignment:
Q  208 gaaatagaagagagagaagtgttgattatttataaaagtac 248  Q
    ||||||||||||| |||||||||| ||||||| ||||||||    
T  22422864 gaaatagaagagaaagaagtgttgtttatttacaaaagtac 22422904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 148 - 200
Target Start/End: Complemental strand, 25970158 - 25970106
Alignment:
Q  148 atcaactttcctatgatgggaaacaattatcttttcccatgctaaaccccacc 200  Q
    ||||||||||| ||| |||||||||| |  | |||||||||||||||||||||    
T  25970158 atcaactttcccatggtgggaaacaactcccctttcccatgctaaaccccacc 25970106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 412 - 452
Target Start/End: Original strand, 41327088 - 41327128
Alignment:
Q  412 aatctctattccctatttctcttcattccaaacaagagaaa 452  Q
    ||||||| |||||||||||||| ||||| ||||||||||||    
T  41327088 aatctctcttccctatttctctgcattctaaacaagagaaa 41327128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 204 - 248
Target Start/End: Complemental strand, 51075093 - 51075049
Alignment:
Q  204 aagagaaatagaagagagagaagtgttgattatttataaaagtac 248  Q
    |||||||||||| ||||||||||||||||||| ||  ||||||||    
T  51075093 aagagaaatagaggagagagaagtgttgattactttcaaaagtac 51075049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 128; Significance: 7e-66; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 14 - 149
Target Start/End: Original strand, 17947603 - 17947738
Alignment:
Q  14 agatgaagattaagaaaagagttgaccgcaagtggggaagagaagaatggttgtggagaaagattgtatgaaaataaatatagtgatgagaatgtatgat 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17947603 agatgaagattaagaaaagagttgaccgcaagtggggaagagaagaatggttgtggagaaagattgtatgaaaataaatatagtgatgagaatgtatgat 17947702  T
Q  114 aatagtgtgtgttagatttaatccaatggttgaaat 149  Q
    |||||||||||| ||||||||||||||||| |||||    
T  17947703 aatagtgtgtgtcagatttaatccaatggtagaaat 17947738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 294 - 456
Target Start/End: Original strand, 27869149 - 27869314
Alignment:
Q  294 ttgagaatataatattttaatgcaagggcaataatggaacaacaaagtgaatagtcttctctctcatctt--ttctctattgcgaggagaaaccaaaaa- 390  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||  |||||||||| |||||||||  |||||     
T  27869149 ttgagaatataatattttaatgcaagggcaataatggaacaacaaagtgaatagtcttctctctcccctttcttctctattgtgaggagaaataaaaaag 27869248  T
Q  391 tgatggatcccactactttttaatctctattccctatttctcttcattccaaacaagagaaagttg 456  Q
    | |||| ||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||    
T  27869249 taatgggtcccactactttttaatctctcttccctatttctcttcatttcaaacaatagaaagttg 27869314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 294 - 456
Target Start/End: Original strand, 37472401 - 37472578
Alignment:
Q  294 ttgagaatataatattttaatgcaagggcaataatggaacaacaaagtgaatagtcttctctctcatcttt--------------tctctattgcgagga 379  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||  ||||              ||||||||| |||||    
T  37472401 ttgagaatataatattttaatgcaagggcaacaatggaacaacaaagtgaatagtcttctgtctcccctttcttctctattttcttctctattgtgagga 37472500  T
Q  380 gaaaccaaaaa-tgatggatcccactactttttaatctctattccctatttctcttcattccaaacaagagaaagttg 456  Q
    ||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  37472501 gaaaccaaaaagtgatggatcccattactttttaatctctatttcctatttctcttcgttccaaacaagagaaagttg 37472578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 67 - 171
Target Start/End: Complemental strand, 26021140 - 26021037
Alignment:
Q  67 tggagaaagattgtatgaaaataaatatagtgatgagaatgtatgataatagtgtgtgttagatttaatccaatggttgaaatcaactttcctatgatgg 166  Q
    ||||| ||||||||||||||| | |||| ||| ||||| |||||||||||||| |||  | ||||||||| ||||| | ||||||||||||||||| | |    
T  26021140 tggaggaagattgtatgaaaa-atatattgtgttgagagtgtatgataatagtatgtacttgatttaatctaatggctaaaatcaactttcctatggtag 26021042  T
Q  167 gaaac 171  Q
    |||||    
T  26021041 gaaac 26021037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 151 - 200
Target Start/End: Complemental strand, 34617702 - 34617653
Alignment:
Q  151 aactttcctatgatgggaaacaattatcttttcccatgctaaaccccacc 200  Q
    |||||||| ||| ||||||||||||||| |||||||||||||||||||||    
T  34617702 aactttcccatggtgggaaacaattatcctttcccatgctaaaccccacc 34617653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 207 - 250
Target Start/End: Original strand, 28634545 - 28634588
Alignment:
Q  207 agaaatagaagagagagaagtgttgattatttataaaagtacta 250  Q
    |||||||||||||||||||||||||||||| | |||||||||||    
T  28634545 agaaatagaagagagagaagtgttgattatatctaaaagtacta 28634588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 205 - 244
Target Start/End: Original strand, 37472328 - 37472367
Alignment:
Q  205 agagaaatagaagagagagaagtgttgattatttataaaa 244  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  37472328 agagaaatagaagagaaagaagtgttgattatttataaaa 37472367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 200
Target Start/End: Complemental strand, 11872135 - 11872080
Alignment:
Q  145 gaaatcaactttcctatgatgggaaacaattatcttttcccatgctaaaccccacc 200  Q
    ||||| |||||||| |||||||||||||| | | |||||||||| |||||||||||    
T  11872135 gaaatgaactttcccatgatgggaaacaacttttttttcccatgttaaaccccacc 11872080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 20991997 - 20992067
Alignment:
Q  130 tttaatccaatggttgaaatcaactttcctatgatgggaaacaattatcttttcccatgctaaaccccacc 200  Q
    ||||||| |||||||||||  |||||||| ||| ||| |||||| | ||  ||||||||||||||||||||    
T  20991997 tttaatctaatggttgaaaaaaactttcccatggtggaaaacaactctccattcccatgctaaaccccacc 20992067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 452
Target Start/End: Complemental strand, 9224691 - 9224650
Alignment:
Q  411 taatctctattccctatttctcttcattccaaacaagagaaa 452  Q
    |||||||| |||||||||||||| ||||| ||||||||||||    
T  9224691 taatctctcttccctatttctctgcattctaaacaagagaaa 9224650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 452
Target Start/End: Complemental strand, 9272560 - 9272519
Alignment:
Q  411 taatctctattccctatttctcttcattccaaacaagagaaa 452  Q
    |||||||| |||||||||||||| |||| |||||||||||||    
T  9272560 taatctctcttccctatttctctgcatttcaaacaagagaaa 9272519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 119; Significance: 2e-60; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 294 - 456
Target Start/End: Complemental strand, 52796680 - 52796515
Alignment:
Q  294 ttgagaatataatattttaatgcaagggcaataatggaacaacaaagtgaatagtcttctctct--catcttttctctattgcgaggagaaaccaaaaa- 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| | |||||||||| ||||||||||||||||     
T  52796680 ttgagaatataatattttaatgcaagggcaataatggaacaacaaagtgaatagtcttctctctcccatttcttctctattgtgaggagaaaccaaaaag 52796581  T
Q  391 tgatggatcccactactttttaatctctattccctatttctcttcattccaaacaagagaaagttg 456  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||    
T  52796580 tgatgggtcccactactttttaatctctcttccctatttctcttcattccaaactggagaaagttg 52796515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 294 - 456
Target Start/End: Complemental strand, 52099689 - 52099516
Alignment:
Q  294 ttgagaatataatattttaatgcaagggcaataatggaacaacaaagtgaatagtcttctctctc--atcttttctctattgcg--------aggagaaa 383  Q
    |||| |||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||  || | |||||||||           | ||||||    
T  52099689 ttgaaaatataatattttaatgcaagggcaataaataaacaacaaagtgaatagtcttctctctctcatttcttctctattttcttctctaaaagagaaa 52099590  T
Q  384 ccaaaaa-tgatggatcccactactttttaatctctattccctatttctcttcattccaaacaagagaaagttg 456  Q
    ||||||| |||||||||| ||||||||||||||||| || ||||||||||| ||||| ||||||||||||||||    
T  52099589 ccaaaaagtgatggatcctactactttttaatctctctttcctatttctctccattctaaacaagagaaagttg 52099516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 24346182 - 24346137
Alignment:
Q  205 agagaaatagaagagagagaagtgttgattatttataaaagtacta 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  24346182 agagaaatagaagagagagaagtgttgattatttataaaagtacta 24346137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 28255188 - 28255143
Alignment:
Q  205 agagaaatagaagagagagaagtgttgattatttataaaagtacta 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  28255188 agagaaatagaagagagagaagtgttgattatttataaaagtacta 28255143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 43885020 - 43885065
Alignment:
Q  205 agagaaatagaagagagagaagtgttgattatttataaaagtacta 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  43885020 agagaaatagaagagagagaagtgttgattatttataaaagtacta 43885065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 67 - 171
Target Start/End: Complemental strand, 50305752 - 50305649
Alignment:
Q  67 tggagaaagattgtatgaaaataaatatagtgatgagaatgtatgataatagtgtgtgttagatttaatccaatggttgaaatcaactttcctatgatgg 166  Q
    ||||| ||||||||||||||| | |||| ||| ||||| |||||||||||||| |||  | ||||||||| ||||| | ||||||||||||||||| | |    
T  50305752 tggaggaagattgtatgaaaa-atatattgtgttgagagtgtatgataatagtatgtacttgatttaatctaatggctaaaatcaactttcctatggtag 50305654  T
Q  167 gaaac 171  Q
    |||||    
T  50305653 gaaac 50305649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 37516103 - 37516148
Alignment:
Q  205 agagaaatagaagagagagaagtgttgattatttataaaagtacta 250  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||    
T  37516103 agagaaatagaagagagaaaagtgttgattatttataaaattacta 37516148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 39128183 - 39128228
Alignment:
Q  205 agagaaatagaagagagagaagtgttgattatttataaaagtacta 250  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||    
T  39128183 agagaaatagaagagagagaaatgttgattatatataaaagtacta 39128228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 50675639 - 50675594
Alignment:
Q  205 agagaaatagaagagagagaagtgttgattatttataaaagtacta 250  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||    
T  50675639 agagaaatagaagatagagaaatgttgattatttataaaagtacta 50675594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 209 - 248
Target Start/End: Original strand, 37324905 - 37324944
Alignment:
Q  209 aaatagaagagagagaagtgttgattatttataaaagtac 248  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  37324905 aaatagaagagagagaagtgttgattatttttaaaagtac 37324944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 204 - 247
Target Start/End: Complemental strand, 44384500 - 44384457
Alignment:
Q  204 aagagaaatagaagagagagaagtgttgattatttataaaagta 247  Q
    |||||| ||||||||||||||| |||||||||||||||||||||    
T  44384500 aagagagatagaagagagagaaatgttgattatttataaaagta 44384457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 33455780 - 33455829
Alignment:
Q  151 aactttcctatgatgggaaacaattatcttttcccatgctaaaccccacc 200  Q
    |||||||||||| ||||||||||||  | |||||||||||||||||||||    
T  33455780 aactttcctatggtgggaaacaattcccctttcccatgctaaaccccacc 33455829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 452
Target Start/End: Original strand, 43659575 - 43659615
Alignment:
Q  412 aatctctattccctatttctcttcattccaaacaagagaaa 452  Q
    ||||||| |||||||||||||| ||||||||||||||||||    
T  43659575 aatctctcttccctatttctctgcattccaaacaagagaaa 43659615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 244
Target Start/End: Complemental strand, 52796756 - 52796717
Alignment:
Q  205 agagaaatagaagagagagaagtgttgattatttataaaa 244  Q
    ||||||| ||||||||||||| ||||||||||||||||||    
T  52796756 agagaaaaagaagagagagaaatgttgattatttataaaa 52796717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 377 - 454
Target Start/End: Original strand, 24696241 - 24696319
Alignment:
Q  377 ggagaaaccaaaaa-tgatggatcccactactttttaatctctattccctatttctcttcattccaaacaagagaaagt 454  Q
    |||||||||||||| || ||| |||||| | |||| ||||||| |||| ||||| ||| | ||||||||||||||||||    
T  24696241 ggagaaaccaaaaagtggtgggtcccacaatttttcaatctctcttccatatttttctcctttccaaacaagagaaagt 24696319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 43768737 - 43768807
Alignment:
Q  130 tttaatccaatggttgaaatcaactttcctatgatgggaaacaattatcttttcccatgctaaaccccacc 200  Q
    ||||||| |||||||||||  |||||||| ||| ||| |||||| | ||  ||||||||||||||||||||    
T  43768737 tttaatctaatggttgaaaaaaactttcccatggtggaaaacaactctccattcccatgctaaaccccacc 43768807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 138 - 200
Target Start/End: Complemental strand, 45297611 - 45297549
Alignment:
Q  138 aatggttgaaatcaactttcctatgatgggaaacaattatcttttcccatgctaaaccccacc 200  Q
    ||||||| |||  |||||||| |||||||||||||| | || |||||||| ||||||||||||    
T  45297611 aatggttaaaaaaaactttcccatgatgggaaacaactctcctttcccatactaaaccccacc 45297549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 53030980 - 53030910
Alignment:
Q  130 tttaatccaatggttgaaatcaactttcctatgatgggaaacaattatcttttcccatgctaaaccccacc 200  Q
    |||||||||| ||||||||  ||||||  ||| ||||||||||||| || |||| ||||||||||| ||||    
T  53030980 tttaatccaacggttgaaaaaaacttttttataatgggaaacaattctcctttctcatgctaaacctcacc 53030910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 200
Target Start/End: Complemental strand, 33454915 - 33454866
Alignment:
Q  151 aactttcctatgatgggaaacaattatcttttcccatgctaaaccccacc 200  Q
    |||||||  ||| |||||||||||| || |||||||||||||||||||||    
T  33454915 aactttctcatggtgggaaacaattttcctttcccatgctaaaccccacc 33454866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 158
Target Start/End: Original strand, 49086119 - 49086188
Alignment:
Q  89 aaatatagtgatgagaatgtatgataatagtgtgtgttagatttaatccaatggttgaaatcaactttcc 158  Q
    |||||||||| ||| | || ||||||||||||||| ||   |||||||||||||| ||||| ||||||||    
T  49086119 aaatatagtggtgaaagtgcatgataatagtgtgtttttcttttaatccaatggtagaaataaactttcc 49086188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 204 - 248
Target Start/End: Complemental strand, 39692568 - 39692524
Alignment:
Q  204 aagagaaatagaagagagagaagtgttgattatttataaaagtac 248  Q
    ||||||||||||  ||||||||||||||||||||| | |||||||    
T  39692568 aagagaaatagagaagagagaagtgttgattatttttgaaagtac 39692524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 115; Significance: 4e-58; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 294 - 456
Target Start/End: Original strand, 251981 - 252146
Alignment:
Q  294 ttgagaatataatattttaatgcaagggcaataatggaacaacaaagtgaatagtcttctctctcatctt--ttctctattgcgaggagaaaccaaaaa- 390  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||  |||||||||| |||||| |||||||||     
T  251981 ttgagaatataatattttaatgcaagggcaataatggaacaacaaagtgaatagtcttctctctcccctttcttctctattgtgaggagcaaccaaaaag 252080  T
Q  391 tgatggatcccactactttttaatctctattccctatttctcttcattccaaacaagagaaagttg 456  Q
    |||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  252081 tgatgggtcccattactttttaatctctcttccctatttctcttcattccaaacaagataaagttg 252146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 310 - 456
Target Start/End: Original strand, 5045650 - 5045799
Alignment:
Q  310 ttaatgcaagggcaataatggaacaacaaagtgaatagtcttctctctcatcttt--tctctattgcgaggagaaaccaaaaa-tgatggatcccactac 406  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||  ||||  |||| |||| ||| |||||||||||| |||||| |||||||||    
T  5045650 ttaatgcaacggcaataatggaacaacaaagtgaatagtcttctctctcccctttcttctcgattgtgagaagaaaccaaaaagtgatgggtcccactac 5045749  T
Q  407 tttttaatctctattccctatttctcttcattccaaacaagagaaagttg 456  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  5045750 tttttaatctctcttccctatttctctccattccaaacaagagaaagttg 5045799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 205 - 248
Target Start/End: Original strand, 5045535 - 5045578
Alignment:
Q  205 agagaaatagaagagagagaagtgttgattatttataaaagtac 248  Q
    |||||||||||||||| |||||||||||||||||||||||||||    
T  5045535 agagaaatagaagagaaagaagtgttgattatttataaaagtac 5045578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 129 - 200
Target Start/End: Original strand, 25067827 - 25067898
Alignment:
Q  129 atttaatccaatggttgaaatcaactttcctatgatgggaaacaattatcttttcccatgctaaaccccacc 200  Q
    |||| |||||||||   ||| ||||||||||||| |||||||||| |||| |||||||||||||||||||||    
T  25067827 atttgatccaatggacaaaaacaactttcctatggtgggaaacaaatatcctttcccatgctaaaccccacc 25067898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 129 - 200
Target Start/End: Original strand, 34035021 - 34035092
Alignment:
Q  129 atttaatccaatggttgaaatcaactttcctatgatgggaaacaattatcttttcccatgctaaaccccacc 200  Q
    |||| ||||||||||| |||  |||||||| |||||||||||||||| || ||||||||| ||||| |||||    
T  34035021 atttgatccaatggtttaaaataactttcccatgatgggaaacaattctcctttcccatgttaaactccacc 34035092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 247
Target Start/End: Original strand, 251908 - 251950
Alignment:
Q  205 agagaaatagaagagagagaagtgttgattatttataaaagta 247  Q
    |||||||||||||||| | ||||||||||||||||||||||||    
T  251908 agagaaatagaagagaaaaaagtgttgattatttataaaagta 251950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 204 - 234
Target Start/End: Complemental strand, 567143 - 567113
Alignment:
Q  204 aagagaaatagaagagagagaagtgttgatt 234  Q
    |||||||||||||||||||||||||||||||    
T  567143 aagagaaatagaagagagagaagtgttgatt 567113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 1e-55; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 294 - 456
Target Start/End: Complemental strand, 10616152 - 10615988
Alignment:
Q  294 ttgagaatataatattttaatgcaagggcaataatggaacaacaaagtgaatagtcttctctct--catcttttctctattgcgaggagaaaccaaaaa- 390  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||| | ||||||| || ||||||||||||||||     
T  10616152 ttgagaatataatattttaatgcaagggcaataatgaaacaacaaagtgaatagtcttctctctcccatttcttctcta-tgtgaggagaaaccaaaaag 10616054  T
Q  391 tgatggatcccactactttttaatctctattccctatttctcttcattccaaacaagagaaagttg 456  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  10616053 tgatgggtcccactactttttaatctctcttccctatttctcttcatttcaaacaagagaaagttg 10615988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 294 - 455
Target Start/End: Complemental strand, 11240580 - 11240417
Alignment:
Q  294 ttgagaatataatattttaatgcaagggcaataatggaacaacaaagtgaatagtcttctctctcatctt--ttctctattgcgaggagaaaccaaaaat 391  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  |||  ||||||| || ||||||||||||||  |    
T  11240580 ttgagaatataatattttaatgcaagggcaataatggaacaacaaagtgaatagtgttctctctctcctttcttctctactgtgaggagaaaccaaatgt 11240481  T
Q  392 gatggatcccactactttttaatctctattccctatttctcttcattccaaacaagagaaagtt 455  Q
    | | | |||||||| |||||||||||| |||| ||||||||||||||| |||||||||||||||    
T  11240480 ggtaggtcccactattttttaatctctcttccttatttctcttcattctaaacaagagaaagtt 11240417  T

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Target: chr1; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 294 - 358
Target Start/End: Complemental strand, 2167667 - 2167603
Alignment:
Q  294 ttgagaatataatattttaatgcaagggcaataatggaacaacaaagtgaatagtcttctctctc 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  2167667 ttgagaatataatattttaatgcaagggcaataatggaacaacaaagtgaatagtattctgtctc 2167603  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 45708052 - 45708097
Alignment:
Q  205 agagaaatagaagagagagaagtgttgattatttataaaagtacta 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  45708052 agagaaatagaagagagagaagtgttgattatttataaaagtacta 45708097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 10616225 - 10616180
Alignment:
Q  205 agagaaatagaagagagagaagtgttgattatttataaaagtacta 250  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  10616225 agagaaatagaagagagtgaagtgttgattatttataaaagtacta 10616180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 67 - 171
Target Start/End: Original strand, 3789254 - 3789357
Alignment:
Q  67 tggagaaagattgtatgaaaataaatatagtgatgagaatgtatgataatagtgtgtgttagatttaatccaatggttgaaatcaactttcctatgatgg 166  Q
    ||||| ||||||||||||||| | |||| ||| ||||| |||||||||||||| |||  | ||||||||| ||||| | ||||||||||||||||| | |    
T  3789254 tggaggaagattgtatgaaaa-atatattgtgttgagagtgtatgataatagtatgtacttgatttaatctaatggctaaaatcaactttcctatggtag 3789352  T
Q  167 gaaac 171  Q
    |||||    
T  3789353 gaaac 3789357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 154 - 200
Target Start/End: Original strand, 2687729 - 2687775
Alignment:
Q  154 tttcctatgatgggaaacaattatcttttcccatgctaaaccccacc 200  Q
    ||||| ||| ||||||||||||||| |||||||||||||||||||||    
T  2687729 tttcccatggtgggaaacaattatcctttcccatgctaaaccccacc 2687775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 41884224 - 41884277
Alignment:
Q  147 aatcaactttcctatgatgggaaacaattatcttttcccatgctaaaccccacc 200  Q
    |||||||||||||||| ||||||||||||  | ||| |||||||||||||||||    
T  41884224 aatcaactttcctatggtgggaaacaatttcccttttccatgctaaaccccacc 41884277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 247
Target Start/End: Complemental strand, 11240651 - 11240611
Alignment:
Q  205 agagaaatagaagagagagaagtgttgattatttataaaagta 247  Q
    ||||||||||||||||||  |||||||||||||||||||||||    
T  11240651 agagaaatagaagagaga--agtgttgattatttataaaagta 11240611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 248
Target Start/End: Original strand, 42596400 - 42596442
Alignment:
Q  206 gagaaatagaagagagagaagtgttgattatttataaaagtac 248  Q
    ||||||||||||||| ||||||||| ||||| |||||||||||    
T  42596400 gagaaatagaagagaaagaagtgttaattatatataaaagtac 42596442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 386 - 452
Target Start/End: Original strand, 45337954 - 45338020
Alignment:
Q  386 aaaaatgatggatcccactactttttaatctctattccctatttctcttcattccaaacaagagaaa 452  Q
    ||||||||||| ||| || |||||||||||||| ||| |||| | ||| |||||||||||| |||||    
T  45337954 aaaaatgatgggtcctacaactttttaatctctcttctctatatttctgcattccaaacaaaagaaa 45338020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 41122737 - 41122692
Alignment:
Q  205 agagaaatagaagagagagaagtgttgattatttataaaagtacta 250  Q
    ||||||||||||||||||||||||||| | |||| ||||| |||||    
T  41122737 agagaaatagaagagagagaagtgttggtcatttgtaaaactacta 41122692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 204 - 248
Target Start/End: Complemental strand, 8261562 - 8261518
Alignment:
Q  204 aagagaaatagaagagagagaagtgttgattatttataaaagtac 248  Q
    ||||||||||||  ||||||||||||||||||||| | |||||||    
T  8261562 aagagaaatagagaagagagaagtgttgattatttttgaaagtac 8261518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 204 - 248
Target Start/End: Original strand, 17683090 - 17683134
Alignment:
Q  204 aagagaaatagaagagagagaagtgttgattatttataaaagtac 248  Q
    ||||||| |||| ||||||||||||||||||| || |||||||||    
T  17683090 aagagaagtagaggagagagaagtgttgattacttttaaaagtac 17683134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 47334877 - 47334941
Alignment:
Q  129 atttaatccaatggttgaaatcaactttcctatgatgggaaacaattatcttttcccatgctaaa 193  Q
    ||||||||||||||    |||||||||||||||| |||||||||| |  |||||||||| |||||    
T  47334877 atttaatccaatggacataatcaactttcctatggtgggaaacaactcccttttcccatactaaa 47334941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 103; Significance: 6e-51; HSPs: 2)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 310 - 456
Target Start/End: Original strand, 46749 - 46898
Alignment:
Q  310 ttaatgcaagggcaataatggaacaacaaagtgaatagtcttctctctcatcttt--tctctattgcgaggagaaaccaaaaa-tgatggatcccactac 406  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||  ||||  ||||||||| |||||||||||||||| |||||| |||||||||    
T  46749 ttaatgcaacggcaataatggaacaacaaagtgaatagtcttctctctcccctttcttctctattgtgaggagaaaccaaaaagtgatgggtcccactac 46848  T
Q  407 tttttaatctctattccctatttctcttcattccaaacaagagaaagttg 456  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  46849 tttttaatctctcttccctatttctctccattccaaacaagagaaagttg 46898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 205 - 248
Target Start/End: Original strand, 46635 - 46678
Alignment:
Q  205 agagaaatagaagagagagaagtgttgattatttataaaagtac 248  Q
    |||||||||||||||| |||||||||||||||||||||||||||    
T  46635 agagaaatagaagagaaagaagtgttgattatttataaaagtac 46678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 8e-38; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 52 - 195
Target Start/End: Complemental strand, 2522833 - 2522687
Alignment:
Q  52 agagaagaatggttgtggagaaagattgtatgaaaataaa---tatagtgatgagaatgtatgataatagtgtgtgttagatttaatccaatggttgaaa 148  Q
    ||||||||||| ||||| ||||| | |||||| ||| |||   |||||||||||||||||||||||||||||||| | ||||||||||||||| | ||||    
T  2522833 agagaagaatgattgtgaagaaaaactgtatggaaagaaaaaatatagtgatgagaatgtatgataatagtgtgtatcagatttaatccaatgatcgaaa 2522734  T
Q  149 tcaactttcctatgatgggaaacaattatcttttcccatgctaaacc 195  Q
    |||||||||||||||||| ||||||||| | ||||||||||||||||    
T  2522733 tcaactttcctatgatggaaaacaattaccctttcccatgctaaacc 2522687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 204 - 248
Target Start/End: Complemental strand, 29993188 - 29993144
Alignment:
Q  204 aagagaaatagaagagagagaagtgttgattatttataaaagtac 248  Q
    |||||| ||||||||||||||||||||||||||||||||||||||    
T  29993188 aagagagatagaagagagagaagtgttgattatttataaaagtac 29993144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 9923458 - 9923388
Alignment:
Q  130 tttaatccaatggttgaaatcaactttcctatgatgggaaacaattatcttttcccatgctaaaccccacc 200  Q
    ||||||| |||||||||||  |||||| | ||| |||||||||| | ||  ||||||||||||||||||||    
T  9923458 tttaatctaatggttgaaaaaaacttttccatggtgggaaacaactctccattcccatgctaaaccccacc 9923388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 204 - 250
Target Start/End: Complemental strand, 12464247 - 12464201
Alignment:
Q  204 aagagaaatagaagagagagaagtgttgattatttataaaagtacta 250  Q
    ||||||||||||| ||||||||||||||||||| | ||||| |||||    
T  12464247 aagagaaatagaaaagagagaagtgttgattatgtttaaaaatacta 12464201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 151 - 201
Target Start/End: Complemental strand, 35262501 - 35262451
Alignment:
Q  151 aactttcctatgatgggaaacaattatcttttcccatgctaaaccccaccg 201  Q
    |||||||| ||| | ||||||||||||| ||||||||||||||| ||||||    
T  35262501 aactttcccatggtaggaaacaattatcctttcccatgctaaactccaccg 35262451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 200
Target Start/End: Complemental strand, 32943566 - 32943517
Alignment:
Q  151 aactttcctatgatgggaaacaattatcttttcccatgctaaaccccacc 200  Q
    |||||||| ||| |||||||||| |||| |||||||||||||| ||||||    
T  32943566 aactttcccatggtgggaaacaaatatcctttcccatgctaaatcccacc 32943517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 32944483 - 32944532
Alignment:
Q  151 aactttcctatgatgggaaacaattatcttttcccatgctaaaccccacc 200  Q
    |||||| | ||| |||||||||| |||| |||||||||||||||||||||    
T  32944483 aacttttccatggtgggaaacaagtatcatttcccatgctaaaccccacc 32944532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 200
Target Start/End: Original strand, 35263288 - 35263357
Alignment:
Q  131 ttaatccaatggttgaaatcaactttcctatgatgggaaacaattatcttttcccatgctaaaccccacc 200  Q
    |||||| ||||| | ||| ||||||| | ||||||| |||||| |||| |||||||||||||||| ||||    
T  35263288 ttaatctaatggataaaaacaacttttccatgatggaaaacaactatcctttcccatgctaaacctcacc 35263357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 218 - 250
Target Start/End: Complemental strand, 24905412 - 24905380
Alignment:
Q  218 agagagaagtgttgattatttataaaagtacta 250  Q
    ||||||||||||||||||| |||||||||||||    
T  24905412 agagagaagtgttgattatatataaaagtacta 24905380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 152 - 200
Target Start/End: Complemental strand, 26711616 - 26711568
Alignment:
Q  152 actttcctatgatgggaaacaattatcttttcccatgctaaaccccacc 200  Q
    ||||||||||| |||||||||| | || |||||||| ||||||||||||    
T  26711616 actttcctatgttgggaaacaactttcctttcccatactaaaccccacc 26711568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 152 - 200
Target Start/End: Complemental strand, 26981353 - 26981305
Alignment:
Q  152 actttcctatgatgggaaacaattatcttttcccatgctaaaccccacc 200  Q
    ||||||||||| |||||||||| | || |||||||| ||||||||||||    
T  26981353 actttcctatgttgggaaacaactttcctttcccatactaaaccccacc 26981305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 209 - 250
Target Start/End: Original strand, 36075 - 36116
Alignment:
Q  209 aaatagaagagagagaagtgttgattatttataaaagtacta 250  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  36075 aaatagaagagagagaagtgttgattatttataaaagtacta 36116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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