View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10458_low_5 (Length: 503)

Name: NF10458_low_5
Description: NF10458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10458_low_5
NF10458_low_5
[»] chr1 (9 HSPs)
chr1 (1-498)||(9488815-9489312)
chr1 (1-240)||(9464383-9464622)
chr1 (286-498)||(9464642-9464854)
chr1 (149-215)||(11011306-11011372)
chr1 (95-162)||(8942376-8942443)
chr1 (152-219)||(10983933-10984000)
chr1 (95-161)||(8932460-8932526)
chr1 (149-215)||(11008144-11008210)
chr1 (149-215)||(11033597-11033663)
[»] chr4 (1 HSPs)
chr4 (90-231)||(27692780-27692921)
[»] chr5 (1 HSPs)
chr5 (293-329)||(40126739-40126775)


Alignment Details
Target: chr1 (Bit Score: 409; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 1 - 498
Target Start/End: Original strand, 9488815 - 9489312
Alignment:
Q  1 tagatactcaataccactcgttacaccaatacctatatcatacatttgctcagaactcaaagaacccattctttctcttgagaaaatgggtttttcaagc 100  Q
    |||||| ||||||||||  | |||||||| | |||||||| |||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||     
T  9488815 tagatattcaataccacgggctacaccaagagctatatcaaacattttctcagaactcaaagaacccattctttctcttgagaaaatgtgcttttcaaga 9488914  T
Q  101 gaaccattaggcatgaactcataaacaagtgctctttttgttttctcaacacaaaagccaattaggtgaaccacgttaacatggtgaatcgttccaatcg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9488915 gaaccattaggcatgaactcataaacaagtgctctttttgttttctcaacacaaaagccaattaggtgaaccacgttaacatggtgaatcgttccaatcg 9489014  T
Q  201 tagcaacttcattgatgaattcctgtccatttgctcttgactttccacctagcaacttgattgctactaggtgaccgttgcgaagttgtcctttgtaaac 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  9489015 tagcaacttcattgatgaattcctgtccatttgctcttgactttccacctagcaacttgattgcgactaggtgaccgttgcgaagttgtcctttgtaaac 9489114  T
Q  301 agaaccatagccaccttcgccaagtttatccttaaatcctttcgtcannnnnnnaatgtccgagtaagagtatcttattggcatgagattattgtgagat 400  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||       |||||| |||||||||||||||||||||||||||||||||||||||    
T  9489115 agaaccatagccaccttcgccaagtttatccttaaatccttttgtcatttttttaatgtctgagtaagagtatcttattggcatgagattattgtgagat 9489214  T
Q  401 ttaagaaactcttcaactgaatcatatgcagataaatgcctccttctccatttatatgccatgtacatcgggataaatagtaaaccacctatgcttct 498  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  9489215 ttaagaaactcttcaactgaatcatatgccgataaatgcctccttctccatttatatgccatgtacatcgggataaatagtaaaccacccatgattct 9489312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 9464383 - 9464622
Alignment:
Q  1 tagatactcaataccactcgttacaccaatacctatatcatacatttgctcagaactcaaagaacccattctttctcttgagaaaatgggtttttcaagc 100  Q
    |||||| |||||||||| || |||||||| | |||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||     
T  9464383 tagatattcaataccacgcgctacaccaagagctatatcaaacattttctcagaactcaaagaacccattctttctcttgagaaaatgtgtttttcaaga 9464482  T
Q  101 gaaccattaggcatgaactcataaacaagtgctctttttgttttctcaacacaaaagccaattaggtgaaccacgttaacatggtgaatcgttccaatcg 200  Q
    ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |    
T  9464483 gaatcgttaggcatgaactcataaacaagtgctctttttgttttctcaacacaaaagccaattaggtgaaccacattaacatggtgaatcgttccaatgg 9464582  T
Q  201 tagcaacttcattgatgaattcctgtccatttgctcttga 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  9464583 tagcaacttcattgatgaattcctgtccatttgctcttga 9464622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 286 - 498
Target Start/End: Original strand, 9464642 - 9464854
Alignment:
Q  286 ttgtcctttgtaaacagaaccatagccaccttcgccaagtttatccttaaatcctttcgtcannnnnnnaatgtccgagtaagagtatcttattggcatg 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||       |||||||||||||||||||||||||||||||    
T  9464642 ttgtcctttgtaaacagaaccatagccaccttcgccaagtttatcattaaattcttttgtcatttttttaatgtccgagtaagagtatcttattggcatg 9464741  T
Q  386 agattattgtgagatttaagaaactcttcaactgaatcatatgcagataaatgcctccttctccatttatatgccatgtacatcgggataaatagtaaac 485  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9464742 agattattgtgagatttaagaaactcttcaactgaatcatatgcagataaatgcctccttctccatttatatgccatgtacatcgggataaatagtaaac 9464841  T
Q  486 cacctatgcttct 498  Q
    |||||||| ||||    
T  9464842 cacctatgattct 9464854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 215
Target Start/End: Original strand, 11011306 - 11011372
Alignment:
Q  149 acacaaaagccaattaggtgaaccacgttaacatggtgaatcgttccaatcgtagcaacttcattga 215  Q
    |||||||| ||||| || || ||||| ||||||||||||||| | ||||| ||||||||||||||||    
T  11011306 acacaaaaaccaatgagctgcaccacattaacatggtgaatcctaccaatggtagcaacttcattga 11011372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 8942376 - 8942443
Alignment:
Q  95 tcaagcgaaccattaggcatgaactcataaacaagtgctctttttgttttctcaacacaaaagccaat 162  Q
    ||||| || ||||| |||||||| ||||||||||| |||||||||| |  |||||||||||| |||||    
T  8942376 tcaagagagccattgggcatgaaatcataaacaagagctctttttgatccctcaacacaaaatccaat 8942443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 219
Target Start/End: Original strand, 10983933 - 10984000
Alignment:
Q  152 caaaagccaattaggtgaaccacgttaacatggtgaatcgttccaatcgtagcaacttcattgatgaa 219  Q
    ||||| ||||| ||||| ||||| ||||||||||||||| | ||||| ||  ||||||||||||||||    
T  10983933 caaaaaccaataaggtgtaccacattaacatggtgaatcctaccaatggtgacaacttcattgatgaa 10984000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 161
Target Start/End: Original strand, 8932460 - 8932526
Alignment:
Q  95 tcaagcgaaccattaggcatgaactcataaacaagtgctctttttgttttctcaacacaaaagccaa 161  Q
    ||||| || ||||| |||||||| ||||||||||| || | ||||| ||||||||||||||| ||||    
T  8932460 tcaagagagccattgggcatgaaatcataaacaagagcacgttttgatttctcaacacaaaatccaa 8932526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 215
Target Start/End: Original strand, 11008144 - 11008210
Alignment:
Q  149 acacaaaagccaattaggtgaaccacgttaacatggtgaatcgttccaatcgtagcaacttcattga 215  Q
    ||||| || ||||| || || ||||| ||||||||||||||| | ||||| ||||||||||||||||    
T  11008144 acacagaaaccaatgagttgtaccacattaacatggtgaatcctaccaatggtagcaacttcattga 11008210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 215
Target Start/End: Original strand, 11033597 - 11033663
Alignment:
Q  149 acacaaaagccaattaggtgaaccacgttaacatggtgaatcgttccaatcgtagcaacttcattga 215  Q
    |||||||| ||||| || || ||||| ||||||||||| ||| | ||||| ||||||||||||||||    
T  11033597 acacaaaaaccaatgagttgtaccacattaacatggtggatcctaccaatggtagcaacttcattga 11033663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 90 - 231
Target Start/End: Original strand, 27692780 - 27692921
Alignment:
Q  90 gtttttcaagcgaaccattaggcatgaactcataaacaagtgctctttttgttttctcaacacaaaagccaattaggtgaaccacgttaacatggtgaat 189  Q
    |||| ||||| |||||||||||||||||||| ||||| || |||   |||||| | ||| |||| || ||||  || || |||||||| |||||  ||||    
T  27692780 gtttatcaagagaaccattaggcatgaactcgtaaaccagagcttgctttgttctttcagcacagaatccaaccagttgcaccacgttcacatgacgaat 27692879  T
Q  190 cgttccaatcgtagcaacttcattgatgaattcctgtccatt 231  Q
      ||||||| || ||||||||||||||||| || ||||||||    
T  27692880 tcttccaatggttgcaacttcattgatgaagtcttgtccatt 27692921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 293 - 329
Target Start/End: Original strand, 40126739 - 40126775
Alignment:
Q  293 ttgtaaacagaaccatagccaccttcgccaagtttat 329  Q
    ||||||||||||||| |||||||||| ||||||||||    
T  40126739 ttgtaaacagaaccaaagccaccttctccaagtttat 40126775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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