View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10458_low_6 (Length: 490)

Name: NF10458_low_6
Description: NF10458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10458_low_6
NF10458_low_6
[»] chr7 (19 HSPs)
chr7 (1-462)||(20351535-20351996)
chr7 (17-458)||(20361375-20361817)
chr7 (17-458)||(20374676-20375117)
chr7 (17-235)||(20360618-20360834)
chr7 (267-457)||(20360836-20361026)
chr7 (99-336)||(20133612-20133849)
chr7 (170-458)||(20140991-20141279)
chr7 (99-334)||(20338462-20338697)
chr7 (94-144)||(661175-661225)
chr7 (26-144)||(20126625-20126743)
chr7 (269-306)||(661013-661050)
chr7 (99-139)||(22080394-22080434)
chr7 (263-292)||(22021061-22021090)
chr7 (257-294)||(22028327-22028364)
chr7 (263-292)||(22036779-22036808)
chr7 (104-149)||(22520770-22520815)
chr7 (257-309)||(16846795-16846847)
chr7 (99-139)||(22063180-22063220)
chr7 (99-139)||(22069649-22069689)
[»] scaffold0097 (1 HSPs)
scaffold0097 (265-295)||(16720-16750)
[»] chr2 (1 HSPs)
chr2 (265-295)||(20712881-20712911)
[»] chr4 (1 HSPs)
chr4 (399-447)||(11971166-11971214)


Alignment Details
Target: chr7 (Bit Score: 438; Significance: 0; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Original strand, 20351535 - 20351996
Alignment:
1 tgaggaggagcacagactcgacatagttggctcttgcaatggattgctctgcttgtttggcaatactttcacttccaatttcgacattgagacgtggatt 100  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
20351535 tgaggacgagcacatactcgacatagttggctcttgcaatggattgctctgcttgtttggcaatactttcacttccaatttcgacattgagacgtggatt 20351634  T
101 cgcttttggaacccagccacaaggacaatatctgaaaaactaggatatactattcataacaacctacatttccatcataatttgacgttcggttacgtta 200  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
20351635 cgcttttggaaccaagccacaaggacaatatctgaaaaactaggatatactattcataacaagctacatttccatcataatttgacgtttggttacgtta 20351734  T
201 attcaaccgacacttataaggtggcgtatttagttccaaatacaaataatgtgcatgttttaagtttgggcgataatgtttggagaaatattcaaaattc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
20351735 attcaaccgacacttataaggtggcgtatttagttccaaatacaaataatgtgcatgttttaagtttgggcgataatgtttggagaaatattcaaaattc 20351834  T
301 tcccgtggatcatggttattcgatgaatgttgtgaacctacatgagagtattaattggctggaaattcgcgattacaactctcattatgaccgcaacaat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
20351835 tcccgtggatcatggttattcgatgaatgttgtgaacctacatgagattattaattggctggaaattcgcgattacaactctcattatgaccgcaacaat 20351934  T
401 attactatcaagcaatttgtgatcatttctcttgatttggacactgaaacgcattctctgct 462  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
20351935 attactatcaagcaatttgtgatcatttctcttgatttggacactgaaacgcattctctgct 20351996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 17 - 458
Target Start/End: Complemental strand, 20361817 - 20361375
Alignment:
17 ctcgacatagttggctcttgcaatggattgctctgcttgtttggcaatactttcacttccaatttcgacattgagacgtggattcgcttttggaacccag 116  Q
    |||||| |||||| ||||||||||||||| ||||||||||||||| || ||||| || |||||||||| ||||||||||||||||   ||||||||| ||    
20361817 ctcgacctagttgtctcttgcaatggatttctctgcttgtttggccattctttccctaccaatttcgagattgagacgtggattcaaatttggaaccaag 20361718  T
117 ccacaaggacaatatctgaaaaactaggatatactattcataacaacctacatttccatcataatttgacgttcggttacgttaattcaaccgacactta 216  Q
    |||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||| ||||    
20361717 ccacgaggacaatatttggaaaactaggatatactattcataacaacctacatttccatcataatttgacgtttggttatgttaattcaatcgacgctta 20361618  T
217 taaggtggcgtatttagttccaaatacaaataatgtgcatgttttaagtttgggcgataatgtttggagaaatattcaaaattctcccgtggatcatggt 316  Q
    |||||||||||||||||||||||||||||||||||| | |||||| |||  ||| |||||| ||||||||||||||||||||||||||||||||||||||    
20361617 taaggtggcgtatttagttccaaatacaaataatgtacgtgttttcagtaagggagataatatttggagaaatattcaaaattctcccgtggatcatggt 20361518  T
317 tattcgatgaatgttgtgaacctacatgagagtattaattggctggaaattcgcgattacaactctcattatgaccg-caacaatattactatcaagcaa 415  Q
    ||||||||||||||||||||||||  ||||||||||| |||| ||||| ||| ||||| |  ||||| ||||||  | |||||||||||||||  | |||    
20361517 tattcgatgaatgttgtgaacctaagtgagagtattagttggttggaatttcacgatttccgctctcgttatgatggccaacaatattactattcatcaa 20361418  T
416 tttgtgatcatttctcttgatttggacactgaaacgcattctc 458  Q
    ||||||||||||||||||||||||| ||| ||||||| |||||    
20361417 tttgtgatcatttctcttgatttgggcaccgaaacgctttctc 20361375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 17 - 458
Target Start/End: Complemental strand, 20375117 - 20374676
Alignment:
17 ctcgacatagttggctcttgcaatggattgctctgcttgtttggcaatactttcacttccaatttcgacattgagacgtggattcgcttttggaacccag 116  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| || |||||||  | ||||||||||||||||||||||| ||||||||||||||||    
20375117 ctcgacatagttggctcttgcaatggattactctgcttgtttggccattctttcaccgctaatttcgacattgagacgtggatacgcttttggaacccag 20375018  T
117 ccacaaggacaatatctgaaaaactaggatatactattcataacaacctacatttccatcataatttgacgttcggttacgttaattcaaccgacactta 216  Q
    |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||| ||||||||||||||    
20375017 ccacgaggacaatatctgaaaaattaggatatactattcataacaacctacatttccatcataatttgacgttttgttatgttaactcaaccgacactta 20374918  T
217 taaggtggcgtatttagttccaaatacaaataatgtgcatgttttaagtttgggcgataatgtttggagaaatattcaaaattctcccgtggatcatggt 316  Q
    ||||||||||||||||||||||||||||||||||||   |||||| ||| | ||||||||||||||| ||||||||||||| || ||| |||||||||||    
20374917 taaggtggcgtatttagttccaaatacaaataatgtatgtgtttttagtattggcgataatgtttggcgaaatattcaaaactcccccttggatcatggt 20374818  T
317 tattcgatgaatgttgtgaacctacatgagagtattaattggctggaaattcgcgattacaactctcattatgaccgcaacaatattactatcaagcaat 416  Q
    |||||| | |||||||  ||| |   | |||||||||||||||||| ||| |  ||||||  ||| ||||||||  ||||||||||||||||  ||||||    
20374817 tattcgttaaatgttgcaaacttgggtaagagtattaattggctggcaatccatgattaccgctcccattatgattgcaacaatattactattcagcaat 20374718  T
417 ttgtgatcatttctcttgatttggacactgaaacgcattctc 458  Q
    || | || ||||||||||||||||  |||||||| |||||||    
20374717 ttatcattatttctcttgatttgggtactgaaacacattctc 20374676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 17 - 235
Target Start/End: Original strand, 20360618 - 20360834
Alignment:
17 ctcgacatagttggctcttgcaatggattgctctgcttgtttggcaatactttcacttccaatttcgacattgagacgtggattcgcttttggaacccag 116  Q
    |||||| ||||||| ||||||||| |||| ||||||||||||||| || |||||||| |||||||||||||||||||| |||||| ||||||||||||||    
20360618 ctcgacctagttggatcttgcaattgatttctctgcttgtttggccattctttcactgccaatttcgacattgagacgcggattcacttttggaacccag 20360717  T
117 ccacaaggacaatatctgaaaaactaggatatactattcataacaacctacatttccatcataatttgacgttcggttacgttaattcaaccgacactta 216  Q
    ||||  ||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||| ||||  |||||||||||| |||||||    
20360718 ccacggggacaatatctgaaaaactagg--atactattcataacaacctacatatccatcataatttgacgtttggttttgttaattcaaccaacactta 20360815  T
217 taaggtggcgtatttagtt 235  Q
    |||||||| ||||||||||    
20360816 taaggtggtgtatttagtt 20360834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 267 - 457
Target Start/End: Original strand, 20360836 - 20361026
Alignment:
267 tgggcgataatgtttggagaaatattcaaaattctcccgtggatcatggttattcgatgaatgttgtgaacctacatgagagtattaattggctggaaat 366  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||   |||||||||| |||||| | ||||    
20360836 tgggcgataatgtttggagaaatgttcaaaattctcccttggatcatggttattcgataaatgttgtgaacctgagtgagagtattcattggccgaaaat 20360935  T
367 tcgcgattacaactctcattatgaccgcaacaatattactatcaagcaatttgtgatcatttctcttgatttggacactgaaacgcattct 457  Q
    | |||||||| || ||||||||||  ||||||| |||||| |  | |||||||| || |||||||| ||||||| ||||||||| ||||||    
20360936 ttgcgattactacactcattatgattgcaacaaaattactcttcaacaatttgtcattatttctctcgatttgggcactgaaacacattct 20361026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 99 - 336
Target Start/End: Complemental strand, 20133849 - 20133612
Alignment:
99 ttcgcttttggaacccagccacaaggacaatatctgaaaaactaggatatactattcataacaacctacatttccatcataatttgacgttcggttacgt 198  Q
    ||||||| |||||||||||||| |||| ||||||   |||| |||| ||| || |||||||  |||||   ||| ||| |||||||| ||| || || ||    
20133849 ttcgcttctggaacccagccacgaggaaaatatcaccaaaattagggtattctcttcataaagacctatggttctatcctaatttgaagtttggctatgt 20133750  T
199 taattcaaccgacacttataaggtggcgtatttagttccaaatacaaataatgtgcatgttttaagtttgggcgataatgtttggagaaatattcaaaat 298  Q
    |||||||||||||||||| ||||| | ||||||||||||||||||||  |||||   |||||| ||||| ||||||||| ||||||||| ||||||| ||    
20133749 taattcaaccgacacttacaaggtcgtgtatttagttccaaatacaacaaatgtaagtgttttcagttttggcgataatatttggagaactattcaagat 20133650  T
299 tctcccgtggatcatggttattcgatgaatgttgtgaa 336  Q
    ||||||||| |||||| || || ||| |||||||||||    
20133649 tctcccgtgaatcatgattgttggataaatgttgtgaa 20133612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 170 - 458
Target Start/End: Complemental strand, 20141279 - 20140991
Alignment:
170 ttccatcataatttgacgttcggttacgttaattcaaccgacacttataaggtggcgtatttagttccaaatacaaataatgtgcatgttttaagtttgg 269  Q
    ||||||| ||||||||| || | ||| || |||||||| |||||||| ||||||  |||||||||||||  |  ||  |||||  |||| || |||||||    
20141279 ttccatcctaatttgacatttgcttatgtcaattcaactgacacttacaaggtgttgtatttagttccaggtgaaacaaatgtatatgtcttcagtttgg 20141180  T
270 gcgataatgtttggagaaatattcaaaattctcccgtggatcatggttattcgatgaatgttgtgaacctacatgagagtattaattggctggaaattcg 369  Q
    |||||||| ||||||||| ||||||| ||||||| |||||||||| ||| | ||| ||| ||||||| || |||||  |||||| |||| ||| ||||||    
20141179 gcgataatatttggagaactattcaagattctcctgtggatcatgattactggatcaattttgtgaatctgcatgactgtattagttggttggcaattcg 20141080  T
370 cgattacaactctcattatgaccgcaacaatattactatcaagcaatttgtgatcatttctcttgatttggacactgaaacgcattctc 458  Q
    | ||||     ||| ||||||   ||||||||||||| |  | |||||||||||  |||||||| |||||| ||| || || |||||||    
20141079 caattattctgctcgttatgatttcaacaatattactcttgaccaatttgtgattgtttctctttatttgggcaccgagacacattctc 20140991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 99 - 334
Target Start/End: Original strand, 20338462 - 20338697
Alignment:
99 ttcgcttttggaacccagccacaaggacaatatctgaaaaactaggatatactattcataacaacctacatttccatcataatttgacgttcggttacgt 198  Q
    |||| ||||||||||| |||||||||| |||||||| |||| |||| |   ||||||| |||  |||| ||||| ||| |||||| ||| | || || |     
20338462 ttcgtttttggaaccctgccacaaggaaaatatctgcaaaattagggttctctattcacaacggcctatatttctatcctaatttaacgcttggctatga 20338561  T
199 taattcaaccgacacttataaggtggcgtatttagttccaaatacaaataatgtgcatgttttaagtttgggcgataatgtttggagaaatattcaaaat 298  Q
    ||| ||| || ||||||||||||||| |||||| ||||| |||||||  |||||   |||||| | ||||    |||||  |||||||||||||||||||    
20338562 taaatcagccaacacttataaggtggtgtattttgttccgaatacaataaatgtcagtgttttcaatttgcagcataatagttggagaaatattcaaaat 20338661  T
299 tctcccgtggatcatggttattcgatgaatgttgtg 334  Q
    ||||| |||  ||||| ||| || ||||||| ||||    
20338662 tctcctgtgactcatgattactccatgaatgctgtg 20338697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 661225 - 661175
Alignment:
94 gtggattcgcttttggaacccagccacaaggacaatatctgaaaaactagg 144  Q
    |||| |||| ||||||||||| |||||||||||||||||| ||||||||||    
661225 gtggcttcgtttttggaacccggccacaaggacaatatctaaaaaactagg 661175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 144
Target Start/End: Complemental strand, 20126743 - 20126625
Alignment:
26 gttggctcttgcaatggattgctctgcttgtttggcaatactttcacttccaatttcgacattgagacgtggattcgcttttggaacccagccacaagga 125  Q
    ||||| || ||||||||||| ||||||||||||||  |   |||||| ||||||||  | | ||  |||||| |||| |||||||| ||||||||| ||     
20126743 gttggttcctgcaatggattactctgcttgtttggttaggttttcacctccaattttaatagtgttacgtggcttcgtttttggaatccagccacatggg 20126644  T
126 caatatctgaaaaactagg 144  Q
    |||||||||||||| ||||    
20126643 caatatctgaaaaattagg 20126625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 269 - 306
Target Start/End: Complemental strand, 661050 - 661013
Alignment:
269 ggcgataatgtttggagaaatattcaaaattctcccgt 306  Q
    |||||||||||||||||||||||||||||||| |||||    
661050 ggcgataatgtttggagaaatattcaaaattcccccgt 661013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 22080394 - 22080434
Alignment:
99 ttcgcttttggaacccagccacaaggacaatatctgaaaaa 139  Q
    |||| ||||||||||||||||||||||||||||| ||||||    
22080394 ttcgtttttggaacccagccacaaggacaatatcagaaaaa 22080434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 292
Target Start/End: Original strand, 22021061 - 22021090
Alignment:
263 agtttgggcgataatgtttggagaaatatt 292  Q
    ||||||||||||||||||||||||||||||    
22021061 agtttgggcgataatgtttggagaaatatt 22021090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 294
Target Start/End: Original strand, 22028327 - 22028364
Alignment:
257 gttttaagtttgggcgataatgtttggagaaatattca 294  Q
    ||||| ||||||||||||||||||||||| ||||||||    
22028327 gtttttagtttgggcgataatgtttggaggaatattca 22028364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 292
Target Start/End: Original strand, 22036779 - 22036808
Alignment:
263 agtttgggcgataatgtttggagaaatatt 292  Q
    ||||||||||||||||||||||||||||||    
22036779 agtttgggcgataatgtttggagaaatatt 22036808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 149
Target Start/End: Complemental strand, 22520815 - 22520770
Alignment:
104 ttttggaacccagccacaaggacaatatctgaaaaactaggatata 149  Q
    |||||||||||| |||||||||||| |||||||||| |||| ||||    
22520815 ttttggaacccatccacaaggacaagatctgaaaaattagggtata 22520770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 309
Target Start/End: Complemental strand, 16846847 - 16846795
Alignment:
257 gttttaagtttgggcgataatgtttggagaaatattcaaaattctcccgtgga 309  Q
    ||||| ||| |||||||||||| ||||||||||||||||| || ||| |||||    
16846847 gtttttagtctgggcgataatgcttggagaaatattcaaagttttccggtgga 16846795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 22063180 - 22063220
Alignment:
99 ttcgcttttggaacccagccacaaggacaatatctgaaaaa 139  Q
    |||| |||||||||||||||||||||| |||||| ||||||    
22063180 ttcgtttttggaacccagccacaaggataatatcagaaaaa 22063220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 22069649 - 22069689
Alignment:
99 ttcgcttttggaacccagccacaaggacaatatctgaaaaa 139  Q
    |||| |||||||||||||||||||||| |||||| ||||||    
22069649 ttcgtttttggaacccagccacaaggataatatcagaaaaa 22069689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 295
Target Start/End: Complemental strand, 16750 - 16720
Alignment:
265 tttgggcgataatgtttggagaaatattcaa 295  Q
    |||||||||||||||||||||||||||||||    
16750 tttgggcgataatgtttggagaaatattcaa 16720  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 295
Target Start/End: Complemental strand, 20712911 - 20712881
Alignment:
265 tttgggcgataatgtttggagaaatattcaa 295  Q
    |||||||||||||||||||||||||||||||    
20712911 tttgggcgataatgtttggagaaatattcaa 20712881  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 399 - 447
Target Start/End: Complemental strand, 11971214 - 11971166
Alignment:
399 atattactatcaagcaatttgtgatcatttctcttgatttggacactga 447  Q
    ||||||| ||||||||||||||||| ||||| |||||||| | ||||||    
11971214 atattacaatcaagcaatttgtgattatttcacttgattttggcactga 11971166  T

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