View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10458_low_7 (Length: 376)
Name: NF10458_low_7
Description: NF10458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10458_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 18 - 283
Target Start/End: Original strand, 13088162 - 13088427
Alignment:
| Q |
18 |
aattagagcaaagagactcaattccattgtagtctcctagatcttcttctacagaaaattttacatttttcatttcactaagtttgttggtttcccaaaa |
117 |
Q |
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| T |
13088162 |
aattagagcaaagagactcaattccattgtagtctcctagatcttcttctacagaaaatttaacatttttcatttcactaagtttgttggtttcccaaaa |
13088261 |
T |
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| Q |
118 |
aatatcattggatgaactaagtttatcctcaactatattgaaactcaagtcaccaaaattgcacaagttttccatcaccaattgaaactaattttttctt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13088262 |
aatatcattggatgaactaagtttatcctcaactatattgaaactcaagtcaccaaaattgcacaagttttccatcaccaattgaaactaattttttctt |
13088361 |
T |
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| Q |
218 |
tcagtgtaattagtttcaaactaattatgttcttaattatgaaccacattctctatatataacaag |
283 |
Q |
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| T |
13088362 |
tcagtgtaattagtttcaaactaattatgttcttaattatgaaccacattctctatatataacaag |
13088427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 13083872 - 13084046
Alignment:
| Q |
18 |
aattagagcaaagagactcaattccattgtagtctcctagatcttcttctacagaaaattttacatttttcatttcactaagtttgttggtttcccaaaa |
117 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||| || | |||||||||||||| |
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| T |
13083872 |
aattagagcaaagagactcaattccattatagtctcctagatcttctgctacagaaaattgtacatttttcatttcattatgccctttggtttcccaaaa |
13083971 |
T |
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| Q |
118 |
aatatcattggatgaactaagtttatcctcaactatattgaaactcaagtcaccaaaattgcacaagttttccat |
192 |
Q |
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| T |
13083972 |
tgtatcattggatgaactaagtttatcctcaactatattgaaactgaagtcacccaaattgtataagttttccat |
13084046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 13094090 - 13094160
Alignment:
| Q |
18 |
aattagagcaaagagactcaattccattgtagtctcctagatcttcttctacagaaaattttacatttttc |
88 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
13094090 |
aattagagcaaagagactcaattccattacagtctcctagatcttctgctacagaaaatttaacatttttc |
13094160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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