View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10459_high_1 (Length: 526)

Name: NF10459_high_1
Description: NF10459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10459_high_1
NF10459_high_1
[»] chr7 (2 HSPs)
chr7 (1-309)||(4488186-4488494)
chr7 (394-509)||(4487984-4488099)
[»] chr3 (3 HSPs)
chr3 (1-211)||(1409606-1409816)
chr3 (250-309)||(1409549-1409608)
chr3 (83-147)||(1402810-1402874)
[»] chr5 (3 HSPs)
chr5 (185-309)||(19023787-19023911)
chr5 (394-505)||(19023590-19023701)
chr5 (87-160)||(11955361-11955434)
[»] chr4 (2 HSPs)
chr4 (394-487)||(14244700-14244793)
chr4 (250-309)||(14244855-14244914)
[»] chr2 (2 HSPs)
chr2 (394-487)||(6355250-6355343)
chr2 (250-309)||(6355405-6355464)
[»] chr1 (1 HSPs)
chr1 (87-186)||(40682223-40682322)
[»] chr8 (3 HSPs)
chr8 (441-487)||(6624755-6624801)
chr8 (441-487)||(6790986-6791032)
chr8 (441-487)||(6597226-6597272)


Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 4488494 - 4488186
Alignment:
Q  1 aggtaagatattgttcttcatgaatattaatttgaacaaatagtgcactataggaactgcattcttatactattgttgaaacaggtgcatgtagaagttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4488494 aggtaagatattgttcttcatgaatattaatttgaacaaatagtgcactataggaactgcattcttatactattgttgaaacaggtgcatgtagaagttg 4488395  T
Q  101 tagtgattgaatcagatgatgtggcatctgcagtggcagaggaagtaatgaagtatgctataacgaaattggtcgttggagcttcaatgggtggcttatt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4488394 tagtgattgaatcagatgatgtggcatctgcagtggcagaggaagtgatgaagtatgctataacgaaattggtcgttggagcttcaatgggtggcttatt 4488295  T
Q  201 taaaaggtacttctataatgacagcaaaatcattttagcatttaccttgactaataaagatttattatcatcaatagtgctaagatcaaactggattctt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  4488294 taaaaggtacttctataatgacagcaaaatcattttagcatttaccttgactaataaagatttattatcaccaatagtgctaaaatcaaactggattctt 4488195  T
Q  301 cctcaaata 309  Q
    |||||||||    
T  4488194 cctcaaata 4488186  T

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Target: chr7; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 394 - 509
Target Start/End: Complemental strand, 4488099 - 4487984
Alignment:
Q  394 agatctctgctggttcgttttctgtttacactcaattatttgattgttttctatagattgattttatatttaagtaattgtaatttatgcagtttctata 493  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  4488099 agatctctgctggttcgttttctgtttacgctcaattatttgattgttttttatagattgattttatatttaagtaattgtaatttatgcagtttctata 4488000  T
Q  494 gattgattttagtatt 509  Q
    ||||||||||||||||    
T  4487999 gattgattttagtatt 4487984  T

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Target: chr3 (Bit Score: 183; Significance: 9e-99; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 1409816 - 1409606
Alignment:
Q  1 aggtaagatattgttcttcatgaatattaatttgaacaaatagtgcactataggaactgcattcttatactattgttgaaacaggtgcatgtagaagttg 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1409816 aggtaagatattgttcttcatgaagattaatttgaacaaatagtgcactataggaactgcattcttatactattgttgaaacaggtgcatgtagaagttg 1409717  T
Q  101 tagtgattgaatcagatgatgtggcatctgcagtggcagaggaagtaatgaagtatgctataacgaaattggtcgttggagcttcaatgggtggcttatt 200  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||| |||||||||||||||||||||||||||  |||||||||||    
T  1409716 tagtgattgaatcagatgatgtggcatctgcggtggcagaggaagtaaccaagtatgctgtaacgaaattggtcgttggagcttcaaccggtggcttatt 1409617  T
Q  201 taaaaggtact 211  Q
    |||||||||||    
T  1409616 taaaaggtact 1409606  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 250 - 309
Target Start/End: Complemental strand, 1409608 - 1409549
Alignment:
Q  250 actaataaagatttattatcatcaatagtgctaagatcaaactggattcttcctcaaata 309  Q
    ||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||    
T  1409608 actaataaagatttattatcaccaatagttctaagatcaaactgcattcttcctcaaata 1409549  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 83 - 147
Target Start/End: Complemental strand, 1402874 - 1402810
Alignment:
Q  83 aggtgcatgtagaagttgtagtgattgaatcagatgatgtggcatctgcagtggcagaggaagta 147  Q
    ||||||||||||| || ||||||||||||||||||||||| ||| ||||||| ||||||||||||    
T  1402874 aggtgcatgtagatgtagtagtgattgaatcagatgatgtagcaactgcagtagcagaggaagta 1402810  T

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Target: chr5 (Bit Score: 105; Significance: 3e-52; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 185 - 309
Target Start/End: Complemental strand, 19023911 - 19023787
Alignment:
Q  185 caatgggtggcttatttaaaaggtacttctataatgacagcaaaatcattttagcatttaccttgactaataaagatttattatcatcaatagtgctaag 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||| |||    
T  19023911 caatgggtggcttatttaaaaggtacttctataatgacagcaaaatcattttagcatctaccttgactaataatgatttattatcaccaatagtgccaag 19023812  T
Q  285 atcaaactggattcttcctcaaata 309  Q
    |||||||||||||| ||||||||||    
T  19023811 atcaaactggattcatcctcaaata 19023787  T

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Target: chr5; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 394 - 505
Target Start/End: Complemental strand, 19023701 - 19023590
Alignment:
Q  394 agatctctgctggttcgttttctgtttacactcaattatttgattgttttctatagattgattttatatttaagtaattgtaatttatgcagtttctata 493  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||    
T  19023701 agatctctgctggttcattttctgtttacactcaattatttgattgttttctgtagattgattttatatttgggtaattgtaatttatgcagtttctata 19023602  T
Q  494 gattgattttag 505  Q
    ||||||||||||    
T  19023601 gattgattttag 19023590  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 160
Target Start/End: Complemental strand, 11955434 - 11955361
Alignment:
Q  87 gcatgtagaagttgtagtgattgaatcagatgatgtggcatctgcagtggcagaggaagtaatgaagtatgcta 160  Q
    |||||||||  || |||||||||||| ||||||||| ||| ||||| | |||||||||||| | ||| ||||||    
T  11955434 gcatgtagatattttagtgattgaataagatgatgtagcaactgcaatagcagaggaagtagttaaggatgcta 11955361  T

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Target: chr4 (Bit Score: 78; Significance: 4e-36; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 394 - 487
Target Start/End: Complemental strand, 14244793 - 14244700
Alignment:
Q  394 agatctctgctggttcgttttctgtttacactcaattatttgattgttttctatagattgattttatatttaagtaattgtaatttatgcagtt 487  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||    
T  14244793 agatctctgctggttagttttctgtttacactcaattatttgattgttttctatagattgattttatagttgggtaattgtaatttatgcagtt 14244700  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 250 - 309
Target Start/End: Complemental strand, 14244914 - 14244855
Alignment:
Q  250 actaataaagatttattatcatcaatagtgctaagatcaaactggattcttcctcaaata 309  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  14244914 actaataaagatttattatcaccaatagtgctaagatcaaactggattcttcctcaaata 14244855  T

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Target: chr2 (Bit Score: 78; Significance: 4e-36; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 394 - 487
Target Start/End: Complemental strand, 6355343 - 6355250
Alignment:
Q  394 agatctctgctggttcgttttctgtttacactcaattatttgattgttttctatagattgattttatatttaagtaattgtaatttatgcagtt 487  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||    
T  6355343 agatctctgctggttagttttctgtttacactcaattatttgattgttttctatagattgattttatagttgggtaattgtaatttatgcagtt 6355250  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 250 - 309
Target Start/End: Complemental strand, 6355464 - 6355405
Alignment:
Q  250 actaataaagatttattatcatcaatagtgctaagatcaaactggattcttcctcaaata 309  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  6355464 actaataaagatttattatcaccaatagtgctaagatcaaactggattcttcctcaaata 6355405  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 87 - 186
Target Start/End: Original strand, 40682223 - 40682322
Alignment:
Q  87 gcatgtagaagttgtagtgattgaatcagatgatgtggcatctgcagtggcagaggaagtaatgaagtatgctataacgaaattggtcgttggagcttca 186  Q
    ||||||||| ||| |||||||||||||||||||||| |||  |||| | ||||||||||||   ||| |||||||||| ||| | ||| |||||||||||    
T  40682223 gcatgtagatgttttagtgattgaatcagatgatgtagcaattgcaatagcagaggaagtagctaaggatgctataaccaaacttgtccttggagcttca 40682322  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 441 - 487
Target Start/End: Original strand, 6624755 - 6624801
Alignment:
Q  441 tttctatagattgattttatatttaagtaattgtaatttatgcagtt 487  Q
    ||||||||||||||||||||||||| |||||||||| |||| |||||    
T  6624755 tttctatagattgattttatatttaggtaattgtaacttatacagtt 6624801  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 441 - 487
Target Start/End: Original strand, 6790986 - 6791032
Alignment:
Q  441 tttctatagattgattttatatttaagtaattgtaatttatgcagtt 487  Q
    ||||||||||||||||||||||||  |||||||||| ||||||||||    
T  6790986 tttctatagattgattttatatttgggtaattgtaacttatgcagtt 6791032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 441 - 487
Target Start/End: Original strand, 6597226 - 6597272
Alignment:
Q  441 tttctatagattgattttatatttaagtaattgtaatttatgcagtt 487  Q
    |||||||||||| |||||||||||  |||||||||| ||||||||||    
T  6597226 tttctatagattaattttatatttgggtaattgtaacttatgcagtt 6597272  T

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