View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10459_high_4 (Length: 241)
Name: NF10459_high_4
Description: NF10459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10459_high_4 |
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| [»] chr3 (3 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 32253703 - 32253481
Alignment:
| Q |
18 |
actttcagttctgatctatgtaattgaaaattaatacattttaattacaggacaacctagaactactatttattttctgctgtagccttgtagaaactag |
117 |
Q |
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| T |
32253703 |
actttcagttctgatcaatgtaattgaaaattaatacattttaattacaggacaacctagaactactatttattttctgctgtagccttgtagaaactag |
32253604 |
T |
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| Q |
118 |
ttagagcaaaatttccataacttcatgttctcattcattaatatccttagattttttactatagttgcttcccctaattcttgtttcaaaacagcatttg |
217 |
Q |
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| T |
32253603 |
ttagagcaaa-tttccataacttcatgttctcattcattaatatccttagattttttactatagttgcttcctctaattcttgtttcaaaacagcatttg |
32253505 |
T |
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| Q |
218 |
aagcagtatttaatggatcatggc |
241 |
Q |
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| T |
32253504 |
aagcagtatttaatggatcatggc |
32253481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 223
Target Start/End: Complemental strand, 8732180 - 8732134
Alignment:
| Q |
177 |
tatagttgcttcccctaattcttgtttcaaaacagcatttgaagcag |
223 |
Q |
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| T |
8732180 |
tatatttgcttcctctaattcttatttctaaacagcatttgaagcag |
8732134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 223
Target Start/End: Complemental strand, 9084067 - 9084021
Alignment:
| Q |
177 |
tatagttgcttcccctaattcttgtttcaaaacagcatttgaagcag |
223 |
Q |
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| T |
9084067 |
tatatttgcttcctctaattcttatttctaaacagcatttgaagcag |
9084021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 177 - 241
Target Start/End: Original strand, 36372547 - 36372611
Alignment:
| Q |
177 |
tatagttgcttcccctaattcttgtttcaaaacagcatttgaagcagtatttaatggatcatggc |
241 |
Q |
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| T |
36372547 |
tatatttgcttcctctaattcttatttctaaacagcatttgaagcagtattgaatcgttcatggc |
36372611 |
T |
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