View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10459_low_1 (Length: 706)
Name: NF10459_low_1
Description: NF10459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10459_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 605; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 605; E-Value: 0
Query Start/End: Original strand, 76 - 688
Target Start/End: Complemental strand, 4824075 - 4823463
Alignment:
| Q |
76 |
ggtccagaaaacacacttaggaatgtttaagtttcgattcattcaaagactataatgacgctatctcacatatttaaagaccagatgactatttactcac |
175 |
Q |
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| T |
4824075 |
ggtccagaaaacacacttaggaatgtttaagtttcgattcattcaaagactataatgacgctatctcacatatttaaggaccagatgactatttactcac |
4823976 |
T |
|
| Q |
176 |
agtttggagtagtatgagcaactgaaggaagtagtaagaggctcctccaattgtagcatacttcaacttctcttttccttcaacgtctgagaaatcatcg |
275 |
Q |
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| T |
4823975 |
agtttggagtagtatgagcaactgaaggaagtagtaagaggctcctccaattgtagcatacttcaacttctcttttccttcaacgtctgagaaatcatcg |
4823876 |
T |
|
| Q |
276 |
tcttttgaacgactaaagcctccaactaaccatccaagatttctgtagcctccattatacagctttgaagttgctgtcattgacctgaatagtcactcac |
375 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4823875 |
tcttttgaacgactaaagcctccaactaaccatccaagatttctgtaacctccattatacagctttgaagttgctgtcattgacctgaatagtcactcac |
4823776 |
T |
|
| Q |
376 |
caatcaatattttgcttcattgtcataataataaactttttctatatgctaataatgcttttatattgtaaattggggtgaatcacatatacaaatgaaa |
475 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4823775 |
caatcaatattttgcttcattgtcataataataaactttttctatatgctaataatgcttttatattgtaaattggggtgaatcacatatacaaatgaaa |
4823676 |
T |
|
| Q |
476 |
aagatatatgctagtaaagcttcaaatcaattttattgcacactgcactttctaacacagtttaacaatgactaatccttgtttgagaacatatttgaca |
575 |
Q |
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| T |
4823675 |
aagatatatgctagtaaagcttcaaatcaattttattgcacactgcactttctaacacagtttaacaatgactaatccttgtttgagaacatatttgaca |
4823576 |
T |
|
| Q |
576 |
cacaatgtgggttttattctcacctcccagccggattttcttcctatacgtgatttcaaaatcaaacttttgatcactagcttaaactactcgagtccct |
675 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4823575 |
cacaatgtgggttttattctcacctcccagccggattttcttcctatacgtgatttcaaaatcaaacttttgatcactagcttaaactactcgagtccct |
4823476 |
T |
|
| Q |
676 |
tactactcggacc |
688 |
Q |
| |
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||||||||||||| |
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| T |
4823475 |
tactactcggacc |
4823463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 4824416 - 4824363
Alignment:
| Q |
22 |
ttcaatgtaccaattttggagtgtttactcacttctataagtaactgacaggaa |
75 |
Q |
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| T |
4824416 |
ttcaatgtaccaattttggagtgtttactcacttctataagaaactgacaggaa |
4824363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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