View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10459_low_10 (Length: 237)
Name: NF10459_low_10
Description: NF10459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10459_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 13447250 - 13447045
Alignment:
| Q |
19 |
gatacatggttgattcatgtcgttcttgtgaaaattgtgccgacgatattgagaattactgcaccaaatatactcaaacattcaatggtaagtctcgtga |
118 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13447250 |
gatacatggttgattcatgtcgttcttgcgaaaattgtgccgacgatattgagaattactgcaccaaatatactcaaacattcaatggtaagtctcgtga |
13447151 |
T |
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| Q |
119 |
tggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcctgatagcttacctcttgatggtgccggtcct |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13447150 |
tggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcctgatagcttacctcttgatggtgccggtcct |
13447051 |
T |
|
| Q |
219 |
cttctt |
224 |
Q |
| |
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|||||| |
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| T |
13447050 |
cttctt |
13447045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 13419699 - 13419494
Alignment:
| Q |
19 |
gatacatggttgattcatgtcgttcttgtgaaaattgtgccgacgatattgagaattactgcaccaaatatactcaaacattcaatggtaagtctcgtga |
118 |
Q |
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||||||||||||||||||||||||| || |||||||||| |||||| |||||||||||||| | | || ||| |||| || |||| |||||| |
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| T |
13419699 |
gatacatggttgattcatgtcgttcatgccaaaattgtgctgacgatcttgagaattactgcccaacatttacagtcacatgtggtgcaaagtatcgtga |
13419600 |
T |
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| Q |
119 |
tggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcctgatagcttacctcttgatggtgccggtcct |
218 |
Q |
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|||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
13419599 |
tggcaccgtcacatatggaggttactccgactcaatggttgcagacgagcactttgtgattcgcattcctgatagcttacctcttgatgctgccggtcct |
13419500 |
T |
|
| Q |
219 |
cttctt |
224 |
Q |
| |
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|||||| |
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| T |
13419499 |
cttctt |
13419494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 13426590 - 13426385
Alignment:
| Q |
19 |
gatacatggttgattcatgtcgttcttgtgaaaattgtgccgacgatattgagaattactgcaccaaatatactcaaacattcaatggtaagtctcgtga |
118 |
Q |
| |
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||||||||||||||||||||||||| || ||||||||||| || ||| |||||||||||||| || || | || |||| || ||||| |||||| |
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| T |
13426590 |
gatacatggttgattcatgtcgttcatgcgaaaattgtgcggaagatcttgagaattactgcccccaacaaacagttacatgtggtgctaagtatcgtga |
13426491 |
T |
|
| Q |
119 |
tggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcctgatagcttacctcttgatggtgccggtcct |
218 |
Q |
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||||| |||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
13426490 |
tggcagcgtcacatatggaggttattccgactcaatggttgcagatgagcactttgtgattcgcattcctgatagcttacctcttgatgttgccggtcct |
13426391 |
T |
|
| Q |
219 |
cttctt |
224 |
Q |
| |
|
|||||| |
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|
| T |
13426390 |
cttctt |
13426385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 108 - 205
Target Start/End: Complemental strand, 13413265 - 13413168
Alignment:
| Q |
108 |
aagtctcgtgatggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcctgatagcttacctcttga |
205 |
Q |
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|
|||| ||||||||| || |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||| |
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| T |
13413265 |
aagtatcgtgatggaaccgtcacttatggaggttactccgactcaatggttgcagacgagcactttgtgattcgcattcctgacaacatacctcttga |
13413168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 133 - 207
Target Start/End: Complemental strand, 13454089 - 13454015
Alignment:
| Q |
133 |
atggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcctgatagcttacctcttgatg |
207 |
Q |
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||||||| ||||| |||||||||||| | ||||||||||||||| |||||||||| ||| ||||||||||||| |
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| T |
13454089 |
atggaggcttctctgactcaatggtttccgacgagcactttgtgtttcgcattccagatcagttacctcttgatg |
13454015 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 205
Target Start/End: Original strand, 13393562 - 13393641
Alignment:
| Q |
126 |
atcacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcctgatagcttacctcttga |
205 |
Q |
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||||| |||||||| | ||| ||||||||||||||||| ||||||||| | ||| |||||||||| ||||||| ||||| |
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| T |
13393562 |
atcacatatggagggtactctgactcaatggttgcagatgagcactttatagttcacattcctgatggcttaccacttga |
13393641 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 113 - 187
Target Start/End: Complemental strand, 47601427 - 47601353
Alignment:
| Q |
113 |
tcgtgatggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcc |
187 |
Q |
| |
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|||||||||||| | ||| || ||||||| ||| ||||||||||||| |||||||||||||||| ||| |||||| |
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| T |
47601427 |
tcgtgatggcaccaccacatacggaggttactctgactcaatggttgtagacgagcactttgtggttcacattcc |
47601353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 220
Target Start/End: Original strand, 28430528 - 28430632
Alignment:
| Q |
116 |
tgatggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcctgatagcttacctcttgatggtgccggt |
215 |
Q |
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||||||||| ||||| |||||||| | ||||||| ||||||| | ||||| ||||||||| ||||||| ||||| |||||||||||| ||| | | |
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| T |
28430528 |
tgatggcaccatcacatatggaggctactccgacacaatggtcaccgacgaaagctttgtgatcagcattccaaatagcctacctcttgatgctgcagct |
28430627 |
T |
|
| Q |
216 |
cctct |
220 |
Q |
| |
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||||| |
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| T |
28430628 |
cctct |
28430632 |
T |
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