View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10459_low_4 (Length: 322)
Name: NF10459_low_4
Description: NF10459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10459_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 23145469 - 23145778
Alignment:
| Q |
1 |
tattcgctagttatttaaattcgggaactgatttgaatattataaattagagattaaattaagattgaatgaaaactatttactatatgcaatctagtaa |
100 |
Q |
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| T |
23145469 |
tattcgctagttatttaaattcgggaactgatttgaatattataaattagagattaaattaagattgaatgaaaactatttactatatgcaatctagtaa |
23145568 |
T |
|
| Q |
101 |
acatggttaagttgaacaatctttatttattttaactcttatagccaagcatagccaacttatttcgactggaagaaggtatgttttcggcactctgcta |
200 |
Q |
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| T |
23145569 |
acatggttaagttgaacaatctttatttattttaactcttatagccaagcatagccaacttatttcgactggaagaaggtatgttttcggcactctgcta |
23145668 |
T |
|
| Q |
201 |
aaataattatcggtacactggcaaagttttcagtttcttctcgtgaagctcatgtaccttgcaaaggattataaacaaaagggcacaataaaagatcatc |
300 |
Q |
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| T |
23145669 |
aaataattatcggtacactggcaaagttttcagtttcttctcgtgaagctcatgtaccttgcaaaggattataaacaaaagggcacaataaaagatcatc |
23145768 |
T |
|
| Q |
301 |
ttttcatctc |
310 |
Q |
| |
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||||| |||| |
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| T |
23145769 |
ttttcttctc |
23145778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 3 - 305
Target Start/End: Original strand, 23148308 - 23148611
Alignment:
| Q |
3 |
ttcgctagttatttaaa-ttcgggaactgatttgaatattataaattagagattaaattaagattgaatgaaaactatttactatatgcaatctagtaaa |
101 |
Q |
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| T |
23148308 |
ttcgctagttatttaaaatttgggaactgatttgaatattttaaattagtgattaaattaagattaaacgaaaactattgactaaatgcaatctagtaaa |
23148407 |
T |
|
| Q |
102 |
catggttaagttgaacaatctttatttattttaactcttatagccaagcatagccaacttatttcgactggaagaaggtatgttttcggcactctgctaa |
201 |
Q |
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| T |
23148408 |
catggttaagttgaacaatcttcatttattttaactcttattgccaagcatagcccacttatttcgaccggaagaaggtatgttttcggcactctgctaa |
23148507 |
T |
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| Q |
202 |
aataattatcggtacactggcaaagttttcagtttcttctcgtgaagctcatgtaccttgcaaaggattataaacaaaagggcacaataaaagatcatct |
301 |
Q |
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| T |
23148508 |
aaacattattggtacacttgcaaagttttcagtttcttctagtgaagctcatgtaacttgcaaaggatgataaacaaaagggcacaataaaagatcatct |
23148607 |
T |
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| Q |
302 |
tttc |
305 |
Q |
| |
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|||| |
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| T |
23148608 |
tttc |
23148611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 93 - 203
Target Start/End: Original strand, 23035810 - 23035920
Alignment:
| Q |
93 |
tctagtaaacatggttaagttgaacaatctttatttattttaactcttatagccaagcatagccaacttatttcgactggaagaaggtatgttttcggca |
192 |
Q |
| |
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||||| ||| |||| |||||| |||||||| |||||||||||||||||||||||| ||||||| ||||||||| || | |||||||| | ||||| | |
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| T |
23035810 |
tctagaaaatatggataagttacacaatcttcatttattttaactcttatagccaaacatagcctacttatttctaccgacggaaggtatctgttcggta |
23035909 |
T |
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| Q |
193 |
ctctgctaaaa |
203 |
Q |
| |
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||||||||||| |
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| T |
23035910 |
ctctgctaaaa |
23035920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 310
Target Start/End: Original strand, 23139855 - 23139904
Alignment:
| Q |
261 |
gcaaaggattataaacaaaagggcacaataaaagatcatcttttcatctc |
310 |
Q |
| |
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||||||||| | |||||||||| ||||||||||||||||||||| |||| |
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| T |
23139855 |
gcaaaggatgacaaacaaaaggcaacaataaaagatcatcttttcttctc |
23139904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 241
Target Start/End: Original strand, 23023249 - 23023385
Alignment:
| Q |
103 |
atggttaagttgaacaatctttatttattttaactcttatagccaagcatagccaacttatttcgactggaagaaggtatgttttcggcactctgct-aa |
201 |
Q |
| |
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|||||||| |||||||||||| ||||||||||| || ||| || |||||||||| |||| || || | ||||||||| ||||| ||||| |||| || |
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| T |
23023249 |
atggttaatttgaacaatcttcatttattttaagtcatattgctgagcatagccat-ttatatctaccgacagaaggtatcttttcagcactgtgcttaa |
23023347 |
T |
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| Q |
202 |
aataattatcggtacactggcaaagttttcagtttcttct |
241 |
Q |
| |
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|||| || | ||| |||| |||| ||||||||||||||| |
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| T |
23023348 |
aatatttgt--gtatactgccaaaattttcagtttcttct |
23023385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 310
Target Start/End: Original strand, 23038851 - 23038899
Alignment:
| Q |
262 |
caaaggattataaacaaaagggcacaataaaagatcatcttttcatctc |
310 |
Q |
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|||||||| ||||||||||| ||||||||||||||||||||| |||| |
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| T |
23038851 |
caaaggatgataaacaaaagaaaacaataaaagatcatcttttcttctc |
23038899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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