View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10459_low_5 (Length: 284)

Name: NF10459_low_5
Description: NF10459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10459_low_5
NF10459_low_5
[»] chr5 (6 HSPs)
chr5 (1-132)||(35061006-35061137)
chr5 (4-236)||(42811852-42812084)
chr5 (1-130)||(43022337-43022466)
chr5 (157-276)||(35060858-35060977)
chr5 (157-236)||(43022232-43022311)
chr5 (233-276)||(43022162-43022205)
[»] chr4 (4 HSPs)
chr4 (1-77)||(41565373-41565449)
chr4 (159-236)||(21827596-21827673)
chr4 (56-96)||(21827694-21827734)
chr4 (158-229)||(41565527-41565598)
[»] chr7 (2 HSPs)
chr7 (159-236)||(39603340-39603417)
chr7 (56-96)||(39603438-39603478)


Alignment Details
Target: chr5 (Bit Score: 128; Significance: 3e-66; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 35061137 - 35061006
Alignment:
Q  1 tcaatcgcatattggagtctggcaatagcagtactgaaaatgcggggagcacttctcaagttcaaggtgattgaaacaatcatgatttggatcttaattg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35061137 tcaatcgcatattggagtctggcaatagcagtactgaaaatgcggggagcacttctcaagttcaaggtgattgaaacaatcatgatttggatcttaattg 35061038  T
Q  101 cactattattggctatcggtttatcaagataa 132  Q
    |||||||||||||||| |||||||||||||||    
T  35061037 cactattattggctataggtttatcaagataa 35061006  T

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Target: chr5; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 4 - 236
Target Start/End: Complemental strand, 42812084 - 42811852
Alignment:
Q  4 atcgcatattggagtctggcaatagcagtactgaaaatgcggggagcacttctcaagttcaaggtgattgaaacaatcatgatttggatcttaattgcac 103  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  42812084 atcgcatattggagtctggcaatagcagtactgaaaatgcagggagcacttatcaagttcaaggtgattgaaacaatcatgatttggatcttacttgcac 42811985  T
Q  104 tattattggctatcggtttatcaagataacnnnnnnnnnnnnnnnnnnnnnnnccagatatggagtcttgtcgttgcccacaacccaagataccatctcc 203  Q
    ||||||||||||||||||| | ||||||||                       |||||||||  ||||| |||||||||||| |||||||||||||||||    
T  42811984 tattattggctatcggtttgtgaagataacttttttttgtttgattttattttccagatatgttgtcttctcgttgcccacagcccaagataccatctcc 42811885  T
Q  204 aacttcatctgctacctccaagggagaaccaaa 236  Q
    |||||||||||| ||||||||||||||||||||    
T  42811884 aacttcatctgcaacctccaagggagaaccaaa 42811852  T

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Target: chr5; HSP #3
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 43022466 - 43022337
Alignment:
Q  1 tcaatcgcatattggagtctggcaatagcagtactgaaaatgcggggagcacttctcaagttcaaggtgattgaaacaatcatgatttggatcttaattg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||    
T  43022466 tcaatcgcatattggagtctggcaatagcagtactgaaaatgcgaggagcacttatcaagttcaaggtgattgaaacaatcatgatttggatcttacttg 43022367  T
Q  101 cactattattggctatcggtttatcaagat 130  Q
    |||||||||||||||||||||| |||||||    
T  43022366 cactattattggctatcggtttgtcaagat 43022337  T

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Target: chr5; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 157 - 276
Target Start/End: Complemental strand, 35060977 - 35060858
Alignment:
Q  157 ccagatatggagtcttgtcgttgcccacaacccaagataccatctccaacttcatctgctacctccaagggagaaccaaatatacaggcaatagctgctg 256  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  35060977 ccagatatggagtcttctcgttgcccacaacccaagataccatctccaacttcatctgctacctccaagggagaaccaaatatacaggaaatagctgctg 35060878  T
Q  257 agaaaaaggaggtctctgct 276  Q
    ||||||||||||||||||||    
T  35060877 agaaaaaggaggtctctgct 35060858  T

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Target: chr5; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 157 - 236
Target Start/End: Complemental strand, 43022311 - 43022232
Alignment:
Q  157 ccagatatggagtcttgtcgttgcccacaacccaagataccatctccaacttcatctgctacctccaagggagaaccaaa 236  Q
    |||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  43022311 ccagatatggagtcttctcgttgcccacagcccaagataccatcttcaacttcatctgctacctccaagggagaaccaaa 43022232  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 233 - 276
Target Start/End: Complemental strand, 43022205 - 43022162
Alignment:
Q  233 caaatatacaggcaatagctgctgagaaaaaggaggtctctgct 276  Q
    |||||||||||| |||||||||||||| |||||| |||||||||    
T  43022205 caaatatacaggaaatagctgctgagataaaggatgtctctgct 43022162  T

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Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 41565373 - 41565449
Alignment:
Q  1 tcaatcgcatattggagtctggcaatagcagtactgaaaatgcggggagcacttctcaagttcaaggtgattgaaac 77  Q
    ||||||||||| ||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||    
T  41565373 tcaatcgcatactggagtcaggcaatagcagtactgaaaatgctgggagcacttatcaagttcaaggttattgaaac 41565449  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 21827673 - 21827596
Alignment:
Q  159 agatatggagtcttgtcgttgcccacaacccaagataccatctccaacttcatctgctacctccaagggagaaccaaa 236  Q
    ||||||||||||||   |||| |||||| ||||| | |||| |||||||| |||||||||||| ||||||||||||||    
T  21827673 agatatggagtcttcatgttgtccacaatccaagttgccatttccaactttatctgctacctctaagggagaaccaaa 21827596  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 56 - 96
Target Start/End: Complemental strand, 21827734 - 21827694
Alignment:
Q  56 tcaagttcaaggtgattgaaacaatcatgatttggatctta 96  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  21827734 tcaagtttaaggtgattgaaacaatcatgatttggatctta 21827694  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 158 - 229
Target Start/End: Original strand, 41565527 - 41565598
Alignment:
Q  158 cagatatggagtcttgtcgttgcccacaacccaagataccatctccaacttcatctgctacctccaagggag 229  Q
    ||||||||||||||  ||| || |||||||| ||||| ||||||||||| ||||||||| |||| |||||||    
T  41565527 cagatatggagtctgctcgctgtccacaacctaagattccatctccaacgtcatctgctgcctctaagggag 41565598  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 39603417 - 39603340
Alignment:
Q  159 agatatggagtcttgtcgttgcccacaacccaagataccatctccaacttcatctgctacctccaagggagaaccaaa 236  Q
    ||||||||||| ||  ||||| |||||||||||| |||||| ||||  || |||||||||||| ||||||||||||||    
T  39603417 agatatggagttttcacgttgtccacaacccaagttaccatttccacttttatctgctacctctaagggagaaccaaa 39603340  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 96
Target Start/End: Complemental strand, 39603478 - 39603438
Alignment:
Q  56 tcaagttcaaggtgattgaaacaatcatgatttggatctta 96  Q
    ||||||| ||||||||||||||||||||||||| |||||||    
T  39603478 tcaagtttaaggtgattgaaacaatcatgatttagatctta 39603438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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