View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10460_high_3 (Length: 538)
Name: NF10460_high_3
Description: NF10460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10460_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 53173013 - 53172653
Alignment:
| Q |
1 |
aacccaatacccataaagaaaatagaaactagttaaacttaaaattaggaacactcaatctgtttcgaattaaaaacctatctctatttgaattatgaat |
100 |
Q |
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| T |
53173013 |
aacccaatacccataaagaaaatagaaactagttaaacttaaaattaggaacactcaatctgtttcgaattaaaaacctatctctatttgaattatgaat |
53172914 |
T |
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| Q |
101 |
agttttctaactagtaaatctttaagagtgcacac----tagtctaatgtttgcatgataagatgacgtacccaatgttgatttacatttgatgtaaatg |
196 |
Q |
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| T |
53172913 |
agttttctaactagtaaatctttaagagtgcacacacactagtctaatgtttgcatgataagatgacgtacccaatgttgatttacatttgatgtaaatg |
53172814 |
T |
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| Q |
197 |
aaaattgtatccagtcaattgatacgtagaacagattaggactcttccatttggcattttcttaatttatctcattgattggtgaaattttatatatttt |
296 |
Q |
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| T |
53172813 |
aaaattgtatccagtcaattgatacgtagaacagattaggactcttccacttggcattttcttaatttatctcattgattggtgaaattttatatatttt |
53172714 |
T |
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| Q |
297 |
gacttttatctttacatgagcccacatataaatttttcagtatatactatacttctaacgt |
357 |
Q |
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| T |
53172713 |
gacttttatctttacatcagcccacatataaatttttcagtatatactatacttctaacgt |
53172653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 374 - 520
Target Start/End: Complemental strand, 53172588 - 53172442
Alignment:
| Q |
374 |
cttctaattagatcgttggtatttgtaaaaaataaacaaattgttttgcatccgtgacatatatataattttttcatatcttcgtaaacttggtcaattt |
473 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53172588 |
cttcaaattagatcgttggtatttgtaaaaaataaacaaattgttttgcatccgtgacatatatataattttttcatatcttcgtaaacttggtcaattt |
53172489 |
T |
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| Q |
474 |
gtcacattatctaaattggcatggcgtgttcacttgtccaattaatg |
520 |
Q |
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| T |
53172488 |
gtcacattatctaaattggcatggcgtgttcacttgtccaattaatg |
53172442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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