View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10460_high_6 (Length: 445)
Name: NF10460_high_6
Description: NF10460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10460_high_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-116; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 14380116 - 14380348
Alignment:
| Q |
1 |
aactaatatattttcctaagcaagggttaacaattgtgtaaaatcacagcccattagctaagactcgagagtatgttcaaattgatggtatagtattgaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
14380116 |
aactaatatattttcctaagcaagggttaacaattgtgtaaaatcacagcccattagctaagactcgagagtatgttcaaattgatggtatagtgtggaa |
14380215 |
T |
|
| Q |
101 |
ccaatgaaatgaaatgagataatatcccttttacaaatctaaaaaacctattccatttcattttactacattccgccctatgtaagcaattcaaatgtat |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14380216 |
ccagtgaaatgaaatgagataatatcccttttacaaatctaaaaaacctattccatttcattctactacattccgccctatgtaagcaattcaaatgtat |
14380315 |
T |
|
| Q |
201 |
cctaaaatatatgaatttccaaaacacgatgga |
233 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |
|
|
| T |
14380316 |
cctaaaatacatgaatttccaaaacacgatgga |
14380348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 233 - 429
Target Start/End: Original strand, 14393194 - 14393390
Alignment:
| Q |
233 |
aggagatggaatgtcattgccattttctgaatgatttttgctaagcttgaaaccatcggcaaaacatgttcccccagattttggaagtgaagctgaaggt |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14393194 |
aggagatggaatgtcattgccattttctgaatgatttttgctaagcttgaaaccatcggcaaaacatgttcccccagattttggaagtgaagctgaaggt |
14393293 |
T |
|
| Q |
333 |
atatttcgacaattcattgtaattacaattctgtatgtttaactattttcttagtcttgatgttgatgttcttcatttacgatatcaattgtgtatt |
429 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14393294 |
atatttcgacaattcattgtaattacaattctgtatgtttaactattttcttagtcttgatgttgatgttcttcatttacgatatcaattgtgtatt |
14393390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 9 - 163
Target Start/End: Complemental strand, 14246080 - 14245927
Alignment:
| Q |
9 |
tattttcctaagcaagggttaacaattgtgtaaaatcacagcccattagctaagactcgagagtatgttcaaattgatggtatagtattgaaccaatgaa |
108 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||| ||||| ||||||| | ||||||| |||||||||| ||| |||||||||||| | || | |||| |
|
|
| T |
14246080 |
tattttcctaagcaagggctaataattgtgtaatctcacaacccattatc-aagactcaagagtatgtttaaactgatggtatagtgtgaaattagtgaa |
14245982 |
T |
|
| Q |
109 |
atgaaatgagataatatcccttttacaaatctaaaaaacctattccatttcattt |
163 |
Q |
| |
|
||||| ||||||||||||| |||| |||||||||||||| ||||||||||||||| |
|
|
| T |
14245981 |
atgaagtgagataatatccatttttcaaatctaaaaaacatattccatttcattt |
14245927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 349 - 393
Target Start/End: Complemental strand, 14358346 - 14358302
Alignment:
| Q |
349 |
ttgtaattacaattctgtatgtttaactattttcttagtcttgat |
393 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
14358346 |
ttgtaattacaattctgtatgtttaaatatttctttagtcttgat |
14358302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University