View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10460_high_8 (Length: 338)
Name: NF10460_high_8
Description: NF10460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10460_high_8 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 16 - 338
Target Start/End: Original strand, 21270173 - 21270495
Alignment:
| Q |
16 |
atgaagggatggaccaaacagtgaaacatacattaaataaaacaaatcatgaatacttattttagnnnnnnntaattatagatgtagtgaaaatgattgt |
115 |
Q |
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| T |
21270173 |
atgaagggatggaccaaacagtgaaacatacattaaataaaacaaatcatgaatacttattttagaaaaaaataattttagatgtagtgaaaatgattgt |
21270272 |
T |
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| Q |
116 |
tgtgattttcaaccataaaagatgaaacacaactgcccattctctcaaattgatattgctagggaacactttcggaagaatgcattgatcatagcacaac |
215 |
Q |
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| T |
21270273 |
tgtgattttcaaccataaaagatgaaacacaactgcccattctctcaaattgatattgctagggaacactttcggaagaatgcattgatcatagcacaac |
21270372 |
T |
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| Q |
216 |
accgatacacactatccctgctctctaataaaacatcacctannnnnnnnctgaagaaaccaaaagtgacactataaaatttcgataaccaaaacagata |
315 |
Q |
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| T |
21270373 |
accgatacacactatccctgctctctaataaaacatcacctattttttttctgaagaaaccaaaagtgacactataaaatttagataaccaaaacagata |
21270472 |
T |
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| Q |
316 |
tgaagatataaaacaagcaaaat |
338 |
Q |
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| T |
21270473 |
cgaagatataaaacaagcaaaat |
21270495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 208 - 253
Target Start/End: Original strand, 21292032 - 21292077
Alignment:
| Q |
208 |
agcacaacaccgatacacactatccctgctctctaataaaacatca |
253 |
Q |
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| T |
21292032 |
agcacaacactgatacacactatctctactctctaataaaacatca |
21292077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 97 - 237
Target Start/End: Complemental strand, 43307577 - 43307435
Alignment:
| Q |
97 |
atgtagtgaaaatgattgttgtgatttt-caaccataaaagatgaaacacaactgcccattctctc-aaattgatattgctagggaacactttcggaa-g |
193 |
Q |
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| T |
43307577 |
atgtagggaaaatgattgttgtgatttttcaacca-aaactatgaaacacaactgcccattttctctaaattaatattgcaagggaatactttcggaaag |
43307479 |
T |
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| Q |
194 |
aatgcattgatcatagcacaacaccgatacacactatccctgct |
237 |
Q |
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| T |
43307478 |
aatgcatttttaatagcaaaacaccgatacacactatccctgct |
43307435 |
T |
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