View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10460_low_1 (Length: 683)
Name: NF10460_low_1
Description: NF10460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10460_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 5 - 321
Target Start/End: Original strand, 49563418 - 49563740
Alignment:
| Q |
5 |
ggagaagcaaaggttgttgagagagcggcgtggatgtagatgaag------------acattttggggagttgagaagagctctgagacggtggcagtga |
92 |
Q |
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| T |
49563418 |
ggagaagaaaaggttgttgagagagcggcgtggatgtagatgaaggaggtaacaacaacattttggggagttgagaagagctctgagacggtggcagtga |
49563517 |
T |
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| Q |
93 |
atcatttggaggcggtggcagtgttccctcagcgtctgaggaggcgctactgatattatgggacctaagggtgttcctcggtcagattgggtttggttct |
192 |
Q |
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| T |
49563518 |
atcatttggaggcggtggcagtgttacctcagcgtctgagg---cgctactgatattatgggacctaagggtgttcctcggtcagattgggtttggtttt |
49563614 |
T |
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| Q |
193 |
ggtcaaactcattgctactactcaaaatatttgtaacccccgaatggcttggtgtatcgtaactccttattactcatgtttgagagttacgccctgatcg |
292 |
Q |
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| T |
49563615 |
ggtcaaactcattgctactcctcaaaatatttgtaaccccctaatggcttggtgt---gtaactccttattactcatgttcgagagttacgccctgatcg |
49563711 |
T |
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| Q |
293 |
gcctggatgtatcgtaacaataggttaca |
321 |
Q |
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| T |
49563712 |
gcctggatgtatcgtaacaataggttaca |
49563740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 313 - 626
Target Start/End: Original strand, 49567721 - 49568007
Alignment:
| Q |
313 |
taggttacatccttcagcatcgatgacatgtatttggtactttgaatgaatgaataaagtatggtcgcgagttgatttatcatcacttgtcagagcttaa |
412 |
Q |
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| T |
49567721 |
taggttacatccttcagcatcgatgacatgtatttggta-tttgaatgaat-----aagtatggtcgcgagttgatttatcaccacttgt---------- |
49567804 |
T |
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| Q |
413 |
gatgcggcggcaatatgaggcattcattatgttgtactatagatgaatgtcttttagttgatgatagtttagtagggttgtaggtaatggggttaatact |
512 |
Q |
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| T |
49567805 |
------gcggcaatatgaggcattcat-atgctgtactatagatgaatgtcttttagttgatgataatttagtagggttgtaggtaatcaggttaatact |
49567897 |
T |
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| Q |
513 |
cnnnnnnnnnattgatcctttggttggagtgtgctccttttgcgtgaccatttactgttggtagctgatatcaatagttaactattagctagcatgttga |
612 |
Q |
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| T |
49567898 |
ctttttttttattgatcctttggttggagtgtggtccttttgcgtgatcatttactgttggtagctgatatgaatagttaactat----tagcatgttga |
49567993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 621 - 663
Target Start/End: Original strand, 49568104 - 49568146
Alignment:
| Q |
621 |
gtggaatttatcacatgttatctaatgacgaacatgttcacga |
663 |
Q |
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| T |
49568104 |
gtggaatttatcacatgttatctaatgacgagcatgttgacga |
49568146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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