View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10460_low_10 (Length: 376)

Name: NF10460_low_10
Description: NF10460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10460_low_10
NF10460_low_10
[»] chr5 (28 HSPs)
chr5 (155-376)||(6326109-6326330)
chr5 (105-299)||(6316795-6316988)
chr5 (36-117)||(6326029-6326110)
chr5 (151-268)||(6306905-6307022)
chr5 (298-376)||(6247648-6247730)
chr5 (299-376)||(15884014-15884096)
chr5 (298-348)||(43564951-43565001)
chr5 (298-341)||(14873599-14873642)
chr5 (299-348)||(21576685-21576734)
chr5 (293-333)||(10298635-10298675)
chr5 (299-347)||(19820328-19820376)
chr5 (301-348)||(21190998-21191045)
chr5 (299-342)||(39698628-39698671)
chr5 (298-328)||(7218217-7218247)
chr5 (299-333)||(17123132-17123166)
chr5 (338-376)||(21191051-21191089)
chr5 (299-333)||(22423764-22423798)
chr5 (299-333)||(35017128-35017162)
chr5 (302-348)||(39268541-39268587)
chr5 (307-348)||(17088361-17088402)
chr5 (298-347)||(38464312-38464361)
chr5 (343-376)||(39698567-39698600)
chr5 (299-347)||(7677787-7677835)
chr5 (298-342)||(15086554-15086598)
chr5 (299-347)||(21194063-21194111)
chr5 (301-353)||(21351852-21351904)
chr5 (298-338)||(39758340-39758380)
chr5 (301-333)||(43001890-43001922)
[»] chr1 (40 HSPs)
chr1 (299-374)||(35702542-35702619)
chr1 (301-375)||(25452108-25452180)
chr1 (298-376)||(46940747-46940826)
chr1 (298-376)||(13436484-13436563)
chr1 (298-376)||(22881566-22881649)
chr1 (298-375)||(24334663-24334737)
chr1 (298-349)||(29144319-29144370)
chr1 (297-342)||(31694637-31694682)
chr1 (298-376)||(2288124-2288200)
chr1 (299-342)||(18556385-18556428)
chr1 (301-348)||(42359391-42359438)
chr1 (298-348)||(9828125-9828175)
chr1 (298-348)||(40917830-40917880)
chr1 (299-348)||(32461393-32461442)
chr1 (304-376)||(3490352-3490423)
chr1 (298-342)||(21365991-21366035)
chr1 (298-342)||(22947806-22947850)
chr1 (297-333)||(37598916-37598952)
chr1 (298-354)||(42325623-42325679)
chr1 (299-347)||(47989579-47989627)
chr1 (301-348)||(1486646-1486693)
chr1 (301-348)||(16297223-16297270)
chr1 (301-348)||(17778623-17778670)
chr1 (299-342)||(22515827-22515870)
chr1 (301-348)||(23705422-23705469)
chr1 (299-342)||(27965940-27965983)
chr1 (298-349)||(48632322-48632373)
chr1 (298-348)||(6427545-6427595)
chr1 (298-348)||(15765828-15765878)
chr1 (338-376)||(18337355-18337393)
chr1 (338-376)||(19058851-19058889)
chr1 (299-349)||(48450550-48450599)
chr1 (338-376)||(51410051-51410089)
chr1 (301-334)||(23622391-23622424)
chr1 (299-347)||(5944365-5944413)
chr1 (298-342)||(7918153-7918197)
chr1 (300-376)||(9103666-9103741)
chr1 (299-339)||(16812635-16812675)
chr1 (299-347)||(32899962-32900010)
chr1 (297-333)||(34741931-34741967)
[»] chr7 (21 HSPs)
chr7 (299-376)||(28155596-28155673)
chr7 (299-348)||(598278-598327)
chr7 (298-348)||(5409770-5409820)
chr7 (299-376)||(30813838-30813916)
chr7 (299-347)||(21880223-21880271)
chr7 (299-354)||(6490780-6490835)
chr7 (298-348)||(9778575-9778625)
chr7 (299-333)||(29812598-29812632)
chr7 (300-349)||(32287404-32287453)
chr7 (299-348)||(43027404-43027453)
chr7 (304-348)||(13770766-13770810)
chr7 (298-346)||(35862023-35862071)
chr7 (299-376)||(19213829-19213912)
chr7 (299-342)||(24339729-24339772)
chr7 (338-376)||(21880178-21880216)
chr7 (299-333)||(29763129-29763163)
chr7 (299-348)||(1433529-1433578)
chr7 (299-348)||(10230024-10230073)
chr7 (300-337)||(18035806-18035843)
chr7 (302-342)||(8842282-8842322)
chr7 (303-347)||(40287306-40287350)
[»] chr4 (38 HSPs)
chr4 (297-365)||(30094066-30094134)
chr4 (298-376)||(30298973-30299049)
chr4 (298-376)||(30327841-30327917)
chr4 (299-341)||(35157925-35157967)
chr4 (298-348)||(35161106-35161156)
chr4 (299-376)||(37203290-37203371)
chr4 (299-376)||(10499227-10499303)
chr4 (299-348)||(23292926-23292975)
chr4 (299-347)||(12708213-12708261)
chr4 (299-333)||(18844423-18844457)
chr4 (299-347)||(715545-715593)
chr4 (299-347)||(752871-752919)
chr4 (298-338)||(5775303-5775343)
chr4 (299-347)||(8423658-8423706)
chr4 (298-354)||(11596296-11596352)
chr4 (300-375)||(17425348-17425421)
chr4 (298-342)||(40784029-40784073)
chr4 (298-342)||(53381529-53381573)
chr4 (298-333)||(3064867-3064902)
chr4 (301-376)||(22440559-22440633)
chr4 (299-342)||(36635406-36635449)
chr4 (299-333)||(3144587-3144621)
chr4 (300-342)||(4383443-4383484)
chr4 (338-376)||(12797333-12797371)
chr4 (298-348)||(18513174-18513224)
chr4 (302-348)||(28084594-28084640)
chr4 (338-376)||(28964243-28964281)
chr4 (338-376)||(42640555-42640593)
chr4 (338-375)||(16073421-16073458)
chr4 (299-348)||(16886677-16886726)
chr4 (339-376)||(21945529-21945566)
chr4 (299-348)||(24343583-24343632)
chr4 (300-348)||(3947702-3947750)
chr4 (343-375)||(3947766-3947798)
chr4 (301-376)||(16189735-16189813)
chr4 (298-354)||(20633535-20633591)
chr4 (299-347)||(29205539-29205587)
chr4 (300-348)||(30982808-30982856)
[»] chr8 (25 HSPs)
chr8 (298-348)||(27213595-27213645)
chr8 (299-342)||(15816058-15816101)
chr8 (300-347)||(24205749-24205796)
chr8 (298-348)||(29510232-29510282)
chr8 (299-333)||(39820513-39820547)
chr8 (299-376)||(4948678-4948754)
chr8 (299-348)||(22652057-22652106)
chr8 (299-376)||(24669459-24669536)
chr8 (298-342)||(4673353-4673397)
chr8 (296-348)||(8343037-8343089)
chr8 (296-348)||(8343397-8343449)
chr8 (299-342)||(17751732-17751775)
chr8 (299-342)||(17760719-17760762)
chr8 (299-376)||(31514899-31514973)
chr8 (298-348)||(15131733-15131783)
chr8 (298-348)||(22197670-22197720)
chr8 (299-333)||(24413499-24413533)
chr8 (299-348)||(3951476-3951525)
chr8 (302-335)||(24727684-24727717)
chr8 (299-348)||(36450694-36450743)
chr8 (299-347)||(6065586-6065634)
chr8 (299-347)||(11803341-11803389)
chr8 (301-341)||(16987990-16988030)
chr8 (338-374)||(22204669-22204705)
chr8 (300-348)||(29447040-29447088)
[»] scaffold0003 (1 HSPs)
scaffold0003 (299-348)||(241675-241724)
[»] chr6 (38 HSPs)
chr6 (299-374)||(7938144-7938219)
chr6 (302-376)||(9025448-9025527)
chr6 (300-376)||(1700378-1700454)
chr6 (318-374)||(21924910-21924966)
chr6 (298-348)||(17327589-17327639)
chr6 (298-347)||(12868615-12868664)
chr6 (299-348)||(34595204-34595253)
chr6 (298-342)||(28715371-28715415)
chr6 (300-348)||(31959220-31959268)
chr6 (299-339)||(32839571-32839611)
chr6 (298-333)||(4878027-4878062)
chr6 (299-342)||(7378055-7378098)
chr6 (299-334)||(7723199-7723234)
chr6 (299-333)||(6389817-6389851)
chr6 (338-376)||(7977825-7977863)
chr6 (298-348)||(8365447-8365497)
chr6 (302-348)||(8389411-8389457)
chr6 (298-348)||(8776907-8776957)
chr6 (299-349)||(19294694-19294744)
chr6 (308-354)||(21395262-21395308)
chr6 (299-341)||(21424744-21424786)
chr6 (338-376)||(28152124-28152162)
chr6 (338-376)||(28715321-28715359)
chr6 (338-376)||(34595160-34595198)
chr6 (301-342)||(5569825-5569866)
chr6 (299-348)||(7248439-7248488)
chr6 (299-348)||(7625186-7625235)
chr6 (299-348)||(9107299-9107348)
chr6 (300-348)||(9658949-9658998)
chr6 (298-347)||(10339053-10339102)
chr6 (343-376)||(12696350-12696383)
chr6 (299-348)||(16766778-16766827)
chr6 (300-333)||(17841530-17841563)
chr6 (299-348)||(28152168-28152217)
chr6 (343-376)||(31384946-31384979)
chr6 (300-341)||(31385007-31385048)
chr6 (338-374)||(16388212-16388248)
chr6 (299-347)||(32511606-32511654)
[»] chr3 (28 HSPs)
chr3 (325-376)||(10268468-10268519)
chr3 (298-348)||(41961578-41961628)
chr3 (299-348)||(34185052-34185101)
chr3 (299-376)||(11610547-11610628)
chr3 (299-347)||(20503536-20503584)
chr3 (298-342)||(49651715-49651759)
chr3 (300-347)||(8789489-8789536)
chr3 (298-348)||(27903708-27903758)
chr3 (298-348)||(40052382-40052432)
chr3 (299-348)||(27505321-27505370)
chr3 (298-347)||(40993274-40993323)
chr3 (299-348)||(55401145-55401194)
chr3 (298-342)||(14979225-14979269)
chr3 (301-348)||(4987222-4987269)
chr3 (311-374)||(13414497-13414560)
chr3 (299-333)||(4990912-4990946)
chr3 (299-333)||(8842414-8842448)
chr3 (299-337)||(11252057-11252095)
chr3 (300-342)||(14216979-14217021)
chr3 (300-342)||(14223108-14223150)
chr3 (338-376)||(25775535-25775573)
chr3 (300-342)||(34910393-34910435)
chr3 (304-349)||(1509636-1509681)
chr3 (343-376)||(14209139-14209172)
chr3 (299-328)||(17276817-17276846)
chr3 (301-342)||(29508526-29508567)
chr3 (300-348)||(15999951-15999999)
chr3 (302-354)||(21367330-21367382)
[»] chr2 (23 HSPs)
chr2 (298-348)||(37419824-37419874)
chr2 (304-347)||(23058389-23058432)
chr2 (301-376)||(42832234-42832309)
chr2 (301-347)||(2438661-2438707)
chr2 (298-376)||(19536360-19536430)
chr2 (299-348)||(26769592-26769641)
chr2 (299-348)||(37559047-37559096)
chr2 (299-348)||(38117099-38117148)
chr2 (299-347)||(11223793-11223841)
chr2 (299-347)||(18840953-18841001)
chr2 (298-342)||(29176367-29176411)
chr2 (301-348)||(19942335-19942382)
chr2 (338-376)||(2438714-2438752)
chr2 (299-333)||(18420363-18420397)
chr2 (298-348)||(32200609-32200659)
chr2 (298-348)||(34006929-34006979)
chr2 (299-348)||(10535685-10535734)
chr2 (311-348)||(14996171-14996208)
chr2 (338-375)||(21624294-21624331)
chr2 (299-348)||(35056949-35056998)
chr2 (299-348)||(42511322-42511371)
chr2 (300-348)||(17651633-17651681)
chr2 (300-376)||(23921279-23921355)
[»] scaffold0086 (1 HSPs)
scaffold0086 (299-342)||(3015-3058)
[»] scaffold0004 (1 HSPs)
scaffold0004 (300-347)||(92893-92940)
[»] scaffold0049 (1 HSPs)
scaffold0049 (322-376)||(63799-63853)
[»] scaffold0475 (1 HSPs)
scaffold0475 (298-343)||(3383-3428)
[»] scaffold0793 (1 HSPs)
scaffold0793 (299-347)||(4821-4869)
[»] scaffold0652 (1 HSPs)
scaffold0652 (300-348)||(403-451)
[»] scaffold0223 (1 HSPs)
scaffold0223 (298-376)||(20198-20280)
[»] scaffold0168 (2 HSPs)
scaffold0168 (298-333)||(21115-21150)
scaffold0168 (298-333)||(21373-21408)
[»] scaffold0083 (1 HSPs)
scaffold0083 (338-376)||(45525-45563)
[»] scaffold0027 (1 HSPs)
scaffold0027 (299-333)||(46742-46776)
[»] scaffold0019 (1 HSPs)
scaffold0019 (298-348)||(71806-71856)
[»] scaffold0450 (1 HSPs)
scaffold0450 (299-348)||(8564-8613)
[»] scaffold0136 (2 HSPs)
scaffold0136 (343-376)||(3849-3882)
scaffold0136 (297-333)||(3776-3812)


Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 155 - 376
Target Start/End: Original strand, 6326109 - 6326330
Alignment:
Q  155 ttgagaagctcgcttgaacttctttggttgaaggtaccgagtattcttaggacacaaacaatactttgtatcttcaggtgtcggtgctggaaagatgcaa 254  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6326109 ttgagaagctcacttgaacttctttggttgaaggtaccgagtattcttaggacacaaacaatactttgtatcttcaggtgtcggtgctggaaagatgcaa 6326208  T
Q  255 tggtatgcatttcaccaagaacctgcgggaggtgtttgatacccctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacactgacac 354  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  6326209 tggtatgcatttcaccaagaacctgcaggaggtgtttgatacccctatgaagcacggacacttctcgaattaggcgtgttccggtgtccgacgctgacac 6326308  T
Q  355 tcgtaattacactgaattatgt 376  Q
    | ||||||||||||||||||||    
T  6326309 ttgtaattacactgaattatgt 6326330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 105 - 299
Target Start/End: Original strand, 6316795 - 6316988
Alignment:
Q  105 tttaatccctatttaactatacttgccggccatcattttatcatgtcatgttgagaagctcgcttgaacttctttggttgaaggtaccgagtattcttag 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  6316795 tttaatccctatttaactatacttgccggccatcattttatcatgtcatgttgagaagctcacttgaacttctttggttgaaggtaccgggtattcttag 6316894  T
Q  205 gacacaaacaatactttgtatcttcaggtgtcggtgctggaaagatgcaatggtatgcatttcaccaagaacctgcgggaggtgtttgatacccc 299  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  6316895 gacacaaacaatactttgtatcttcagacgtcggtgctggaaagatgcaatggtatgcatttcaccaagaacctgcaggaggtg-ttgatacccc 6316988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 6326029 - 6326110
Alignment:
Q  36 catgtcctttgtttagtttttcagacacccaccagattatatgtccaacctgttgataaaaatacaaaatttaatccctatt 117  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  6326029 catgtcctttgtttagttttgcagacacccaccagattatatctccaacctgttgataaaaatacaaaatttaatccctatt 6326110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 151 - 268
Target Start/End: Original strand, 6306905 - 6307022
Alignment:
Q  151 catgttgagaagctcgcttgaacttctttggttgaaggtaccgagtattcttaggacacaaacaatactttgtatcttcaggtgtcggtgctggaaagat 250  Q
    |||||||| ||||||  ||||||||| ||||| ||||||||| || ||||||||||| ||||||||||| ||||||||| | ||  |||| |||||||||    
T  6306905 catgttgaaaagctcatttgaacttcattggtggaaggtaccaaggattcttaggactcaaacaatactctgtatcttccgatgatggtgttggaaagat 6307004  T
Q  251 gcaatggtatgcatttca 268  Q
    ||||||||||||||||||    
T  6307005 gcaatggtatgcatttca 6307022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 298 - 376
Target Start/End: Complemental strand, 6247730 - 6247648
Alignment:
Q  298 cctatgaagcacggacacttctcggattaggcgtgttccg----gtgtccgacactgacactcgtaattacactgaattatgt 376  Q
    |||||||||||| |||||||||||||||||| |||| |||    ||||||||||| |||||| ||||||||||||||||||||    
T  6247730 cctatgaagcacagacacttctcggattaggtgtgtcccgtgccgtgtccgacaccgacacttgtaattacactgaattatgt 6247648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 299 - 376
Target Start/End: Complemental strand, 15884096 - 15884014
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttcc-----ggtgtccgacactgacactcgtaattacactgaattatgt 376  Q
    ||||||| ||| |||||| |||||||||||||||||||      ||||||||||| |||||| ||||||||||||||||||||    
T  15884096 ctatgaaacacagacactcctcggattaggcgtgttccagtgtcgtgtccgacaccgacacttgtaattacactgaattatgt 15884014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 298 - 348
Target Start/End: Complemental strand, 43565001 - 43564951
Alignment:
Q  298 cctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    |||||||||||||||||||||||||||||||||||| |||| ||| |||||    
T  43565001 cctatgaagcacggacacttctcggattaggcgtgtcccggcgtcggacac 43564951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 298 - 341
Target Start/End: Complemental strand, 14873642 - 14873599
Alignment:
Q  298 cctatgaagcacggacacttctcggattaggcgtgttccggtgt 341  Q
    ||||||||||||||||||| |||||||||||||||| |||||||    
T  14873642 cctatgaagcacggacactcctcggattaggcgtgtcccggtgt 14873599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 299 - 348
Target Start/End: Original strand, 21576685 - 21576734
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    |||||||||||||||||| |||||||||||||||| || ||||| |||||    
T  21576685 ctatgaagcacggacactcctcggattaggcgtgtcccagtgtcagacac 21576734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 333
Target Start/End: Complemental strand, 10298675 - 10298635
Alignment:
Q  293 atacccctatgaagcacggacacttctcggattaggcgtgt 333  Q
    |||| ||||||||||||||||||| ||||||||||||||||    
T  10298675 atactcctatgaagcacggacactcctcggattaggcgtgt 10298635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 347
Target Start/End: Original strand, 19820328 - 19820376
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtccgaca 347  Q
    |||||||||||||||||| ||| |||||||||||| |||||||| ||||    
T  19820328 ctatgaagcacggacactcctctgattaggcgtgtcccggtgtcggaca 19820376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 348
Target Start/End: Original strand, 21190998 - 21191045
Alignment:
Q  301 atgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    |||||||||||||||| |||||||||||||||| |||| ||| |||||    
T  21190998 atgaagcacggacactcctcggattaggcgtgtcccggagtcggacac 21191045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 342
Target Start/End: Complemental strand, 39698671 - 39698628
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtc 342  Q
    |||||||||||||||||| ||||||||||||||||  |||||||    
T  39698671 ctatgaagcacggacactcctcggattaggcgtgtctcggtgtc 39698628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 328
Target Start/End: Original strand, 7218217 - 7218247
Alignment:
Q  298 cctatgaagcacggacacttctcggattagg 328  Q
    |||||||||||||||||||||||||||||||    
T  7218217 cctatgaagcacggacacttctcggattagg 7218247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 333
Target Start/End: Complemental strand, 17123166 - 17123132
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgt 333  Q
    |||||||||||||||||| ||||||||||||||||    
T  17123166 ctatgaagcacggacactcctcggattaggcgtgt 17123132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 338 - 376
Target Start/End: Original strand, 21191051 - 21191089
Alignment:
Q  338 gtgtccgacactgacactcgtaattacactgaattatgt 376  Q
    ||||||||||| |||||| ||||||||||||||||||||    
T  21191051 gtgtccgacaccgacacttgtaattacactgaattatgt 21191089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 333
Target Start/End: Original strand, 22423764 - 22423798
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgt 333  Q
    |||||||||||||||||| ||||||||||||||||    
T  22423764 ctatgaagcacggacactcctcggattaggcgtgt 22423798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 333
Target Start/End: Complemental strand, 35017162 - 35017128
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgt 333  Q
    |||||||||||||||||| ||||||||||||||||    
T  35017162 ctatgaagcacggacactcctcggattaggcgtgt 35017128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 348
Target Start/End: Original strand, 39268541 - 39268587
Alignment:
Q  302 tgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    ||||||||||||||| |||||||||||||||| || ||||| |||||    
T  39268541 tgaagcacggacactcctcggattaggcgtgtcccagtgtcggacac 39268587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 348
Target Start/End: Complemental strand, 17088402 - 17088361
Alignment:
Q  307 cacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    |||||||||| |||||||||||||||| |||||||| |||||    
T  17088402 cacggacactcctcggattaggcgtgtcccggtgtcggacac 17088361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 347
Target Start/End: Original strand, 38464312 - 38464361
Alignment:
Q  298 cctatgaagcacggacacttctcggattaggcgtgttccggtgtccgaca 347  Q
    |||||||||||| |||||| ||||||||||| |||| |||||||| ||||    
T  38464312 cctatgaagcacagacactcctcggattaggtgtgtcccggtgtcggaca 38464361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 376
Target Start/End: Complemental strand, 39698600 - 39698567
Alignment:
Q  343 cgacactgacactcgtaattacactgaattatgt 376  Q
    ||||||||||||| ||||||||||||||||||||    
T  39698600 cgacactgacacttgtaattacactgaattatgt 39698567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 347
Target Start/End: Complemental strand, 7677835 - 7677787
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtccgaca 347  Q
    ||||||||||| ||| || |||||||||||||||| |||||||| ||||    
T  7677835 ctatgaagcaccgactctcctcggattaggcgtgtcccggtgtcggaca 7677787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 15086598 - 15086554
Alignment:
Q  298 cctatgaagcacggacacttctcggattaggcgtgttccggtgtc 342  Q
    |||||||||||  |||||| |||||||||||||||||||| ||||    
T  15086598 cctatgaagcaaagacactcctcggattaggcgtgttccgatgtc 15086554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 347
Target Start/End: Original strand, 21194063 - 21194111
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtccgaca 347  Q
    |||| ||||||||||||| |||||||||||||||  |||||||| ||||    
T  21194063 ctataaagcacggacactcctcggattaggcgtgccccggtgtctgaca 21194111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 353
Target Start/End: Original strand, 21351852 - 21351904
Alignment:
Q  301 atgaagcacggacacttctcggattaggcgtgttccggtgtccgacactgaca 353  Q
    ||||||||||||||||  ||||||||| |||||||| ||||| ||||| ||||    
T  21351852 atgaagcacggacactcttcggattagacgtgttccagtgtcggacaccgaca 21351904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 338
Target Start/End: Complemental strand, 39758380 - 39758340
Alignment:
Q  298 cctatgaagcacggacacttctcggattaggcgtgttccgg 338  Q
    ||||||||||| ||||||| ||||||| |||||||||||||    
T  39758380 cctatgaagcatggacactcctcggataaggcgtgttccgg 39758340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 333
Target Start/End: Complemental strand, 43001922 - 43001890
Alignment:
Q  301 atgaagcacggacacttctcggattaggcgtgt 333  Q
    |||||||||||||||| ||||||||||||||||    
T  43001922 atgaagcacggacactcctcggattaggcgtgt 43001890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 40)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 299 - 374
Target Start/End: Original strand, 35702542 - 35702619
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttcc--ggtgtccgacactgacactcgtaattacactgaattat 374  Q
    |||||||||||||||||| |||||||||||||||| ||   |||||||||||||||||| ||||||||||| ||||||    
T  35702542 ctatgaagcacggacactcctcggattaggcgtgtcccatcgtgtccgacactgacacttgtaattacacttaattat 35702619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 301 - 375
Target Start/End: Original strand, 25452108 - 25452180
Alignment:
Q  301 atgaagcacggacacttctcggattaggcgtgttccggtgtccgacactgacactcgtaattacactgaattatg 375  Q
    |||||||||||||||| |||| |||||||||||||||||||| ||||| ||||  | ||||||||||||||||||    
T  25452108 atgaagcacggacactgctcgaattaggcgtgttccggtgtctgacaccgaca--cataattacactgaattatg 25452180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 298 - 376
Target Start/End: Original strand, 46940747 - 46940826
Alignment:
Q  298 cctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacac-tgacactcgtaattacactgaattatgt 376  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||| |||||  || ||| ||||||||||| ||||||||    
T  46940747 cctatgaagcacgaacactcctcggattaggcgtgttccggtgtcggacacgcgaaacttgtaattacacttaattatgt 46940826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 298 - 376
Target Start/End: Complemental strand, 13436563 - 13436484
Alignment:
Q  298 cctatgaagcacggacacttctcggattaggcgtgttc-cggtgtccgacactgacactcgtaattacactgaattatgt 376  Q
    |||||||||||||||||||||||||||||| |||||||   |||||||||||  ||||   |||||||||||||||||||    
T  13436563 cctatgaagcacggacacttctcggattagtcgtgttctacgtgtccgacaccaacacatataattacactgaattatgt 13436484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 298 - 376
Target Start/End: Original strand, 22881566 - 22881649
Alignment:
Q  298 cctatgaagcacggacacttctcggattaggcgtgttccg-----gtgtccgacactgacactcgtaattacactgaattatgt 376  Q
    ||||||||||||||||||| |||||||||| ||||| |||     ||||||||||| |||||| ||||||||||| ||||||||    
T  22881566 cctatgaagcacggacactcctcggattagacgtgtcccggtgtcgtgtccgacaccgacacttgtaattacactaaattatgt 22881649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 298 - 375
Target Start/End: Original strand, 24334663 - 24334737
Alignment:
Q  298 cctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacactgacactcgtaattacactgaattatg 375  Q
    ||||||||||||||||||| || ||||||||||||     ||||||||||| |||||| |||||||||||||||||||    
T  24334663 cctatgaagcacggacactacttggattaggcgtgac---gtgtccgacaccgacacttgtaattacactgaattatg 24334737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 298 - 349
Target Start/End: Original strand, 29144319 - 29144370
Alignment:
Q  298 cctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacact 349  Q
    |||||||||||||||||||  |||||||||||||||||||||||| ||||||    
T  29144319 cctatgaagcacggacactcttcggattaggcgtgttccggtgtcggacact 29144370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 342
Target Start/End: Original strand, 31694637 - 31694682
Alignment:
Q  297 ccctatgaagcacggacacttctcggattaggcgtgttccggtgtc 342  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||    
T  31694637 ccctatgaagcacggacactcctcagattaggcgtgttccggtgtc 31694682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 298 - 376
Target Start/End: Original strand, 2288124 - 2288200
Alignment:
Q  298 cctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacactgacactcgtaattacactgaattatgt 376  Q
    |||||||||||| |||| | ||||||||||||||| || |||||||||||| ||||  | |||||||| ||||||||||    
T  2288124 cctatgaagcactgacattcctcggattaggcgtgctcaggtgtccgacaccgaca--cataattacattgaattatgt 2288200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 342
Target Start/End: Original strand, 18556385 - 18556428
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtc 342  Q
    ||||||||||||||||||||||||||||||||||| || |||||    
T  18556385 ctatgaagcacggacacttctcggattaggcgtgtcccagtgtc 18556428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 301 - 348
Target Start/End: Original strand, 42359391 - 42359438
Alignment:
Q  301 atgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    |||||||||||||||| |||||||||||||||| |||||||| |||||    
T  42359391 atgaagcacggacactcctcggattaggcgtgtcccggtgtcggacac 42359438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 298 - 348
Target Start/End: Complemental strand, 9828175 - 9828125
Alignment:
Q  298 cctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    ||||||||||||||||||| |||||||||| ||||| |||||||| |||||    
T  9828175 cctatgaagcacggacactcctcggattagacgtgtcccggtgtcggacac 9828125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 298 - 348
Target Start/End: Complemental strand, 40917880 - 40917830
Alignment:
Q  298 cctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    ||||||||||||||||| | |||||||||||||||| |||||||| |||||    
T  40917880 cctatgaagcacggacagtcctcggattaggcgtgtcccggtgtcggacac 40917830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 299 - 348
Target Start/End: Original strand, 32461393 - 32461442
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    ||||||||||||||||||||| ||||||||||||| || ||||| |||||    
T  32461393 ctatgaagcacggacacttcttggattaggcgtgtcccagtgtcagacac 32461442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 376
Target Start/End: Original strand, 3490352 - 3490423
Alignment:
Q  304 aagcacggacacttctcggattaggcgtgttccggtgtccgacactgacactcgtaattacactgaattatgt 376  Q
    ||||||||||||||||||||||||  |||| ||  |||| ||||| |||||| ||||||||||||||| ||||    
T  3490352 aagcacggacacttctcggattagatgtgtcccaatgtcggacac-gacacttgtaattacactgaataatgt 3490423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 21365991 - 21366035
Alignment:
Q  298 cctatgaagcacggacacttctcggattaggcgtgttccggtgtc 342  Q
    ||||||||||||||||||| ||||||||||||||||  |||||||    
T  21365991 cctatgaagcacggacactcctcggattaggcgtgtctcggtgtc 21366035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 22947850 - 22947806
Alignment:
Q  298 cctatgaagcacggacacttctcggattaggcgtgttccggtgtc 342  Q
    ||||||||||||||||||| |||||||||||||||| | ||||||    
T  22947850 cctatgaagcacggacactcctcggattaggcgtgtccaggtgtc 22947806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 333
Target Start/End: Complemental strand, 37598952 - 37598916
Alignment:
Q  297 ccctatgaagcacggacacttctcggattaggcgtgt 333  Q
    |||||||||||||||||||| ||||||||||||||||    
T  37598952 ccctatgaagcacggacactcctcggattaggcgtgt 37598916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 354
Target Start/End: Complemental strand, 42325679 - 42325623
Alignment:
Q  298 cctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacactgacac 354  Q
    |||||||||||| |||||| |||| |||||| |||| ||| ||||||||||||||||    
T  42325679 cctatgaagcacagacactcctcgaattaggtgtgtcccgatgtccgacactgacac 42325623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 347
Target Start/End: Complemental strand, 47989627 - 47989579
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtccgaca 347  Q
    |||||||||||||||||| |||||||||||||||| ||| |||| ||||    
T  47989627 ctatgaagcacggacactcctcggattaggcgtgtcccgatgtcagaca 47989579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 348
Target Start/End: Original strand, 1486646 - 1486693
Alignment:
Q  301 atgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    ||||||||| |||||| |||||||||||||||| |||||||| |||||    
T  1486646 atgaagcacagacactcctcggattaggcgtgtcccggtgtcggacac 1486693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 348
Target Start/End: Original strand, 16297223 - 16297270
Alignment:
Q  301 atgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    |||||||||||||||| |||||||||||||||| | |||||| |||||    
T  16297223 atgaagcacggacactcctcggattaggcgtgtcctggtgtcggacac 16297270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 348
Target Start/End: Complemental strand, 17778670 - 17778623
Alignment:
Q  301 atgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    |||||||||| |||||||||||||||||| ||| |||||||| |||||    
T  17778670 atgaagcacgaacacttctcggattaggcatgtcccggtgtcggacac 17778623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 342
Target Start/End: Original strand, 22515827 - 22515870
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtc 342  Q
    |||||||||||||||||| ||||||||||||||||  |||||||    
T  22515827 ctatgaagcacggacactcctcggattaggcgtgtctcggtgtc 22515870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 348
Target Start/End: Original strand, 23705422 - 23705469
Alignment:
Q  301 atgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    |||||||||  ||||||||||||||||| ||||| |||||||||||||    
T  23705422 atgaagcacatacacttctcggattaggtgtgttgcggtgtccgacac 23705469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 342
Target Start/End: Original strand, 27965940 - 27965983
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtc 342  Q
    |||||||||| ||||||| |||||||||||||||| ||||||||    
T  27965940 ctatgaagcatggacactcctcggattaggcgtgtcccggtgtc 27965983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 298 - 349
Target Start/End: Original strand, 48632322 - 48632373
Alignment:
Q  298 cctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacact 349  Q
    |||||||||||||||||| ||| ||| |||||||||  ||||||||||||||    
T  48632322 cctatgaagcacggacacctctaggactaggcgtgtcgcggtgtccgacact 48632373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 348
Target Start/End: Complemental strand, 6427595 - 6427545
Alignment:
Q  298 cctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    |||||||||||||||||||  || |||||||||||| |||||||| |||||    
T  6427595 cctatgaagcacggacactcatcagattaggcgtgtcccggtgtcggacac 6427545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 348
Target Start/End: Complemental strand, 15765878 - 15765828
Alignment:
Q  298 cctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    |||||||||||||||||||  ||||||||||||||| || ||||| |||||    
T  15765878 cctatgaagcacggacactcttcggattaggcgtgtcccagtgtcagacac 15765828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 338 - 376
Target Start/End: Complemental strand, 18337393 - 18337355
Alignment:
Q  338 gtgtccgacactgacactcgtaattacactgaattatgt 376  Q
    ||||||||||| |||||| ||||||||||||||||||||    
T  18337393 gtgtccgacaccgacacttgtaattacactgaattatgt 18337355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 338 - 376
Target Start/End: Original strand, 19058851 - 19058889
Alignment:
Q  338 gtgtccgacactgacactcgtaattacactgaattatgt 376  Q
    ||||||||||| |||||| ||||||||||||||||||||    
T  19058851 gtgtccgacaccgacacttgtaattacactgaattatgt 19058889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 349
Target Start/End: Original strand, 48450550 - 48450599
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacact 349  Q
    |||||||||||||||||| |||||||||| |||| ||| ||||||||||||    
T  48450550 ctatgaagcacggacactcctcggattagacgtg-tcctgtgtccgacact 48450599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 338 - 376
Target Start/End: Complemental strand, 51410089 - 51410051
Alignment:
Q  338 gtgtccgacactgacactcgtaattacactgaattatgt 376  Q
    ||||||||||| |||||| ||||||||||||||||||||    
T  51410089 gtgtccgacaccgacacttgtaattacactgaattatgt 51410051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 334
Target Start/End: Complemental strand, 23622424 - 23622391
Alignment:
Q  301 atgaagcacggacacttctcggattaggcgtgtt 334  Q
    ||||||||| ||||||||||||||||||||||||    
T  23622424 atgaagcaccgacacttctcggattaggcgtgtt 23622391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 347
Target Start/End: Complemental strand, 5944413 - 5944365
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtccgaca 347  Q
    |||||||||||| ||||| |||||||||||||| | |||||||| ||||    
T  5944413 ctatgaagcacgaacactcctcggattaggcgtatcccggtgtcggaca 5944365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 7918153 - 7918197
Alignment:
Q  298 cctatgaagcacggacacttctcggattaggcgtgttccggtgtc 342  Q
    ||||||||||||||||||| ||||||||||| |||| | ||||||    
T  7918153 cctatgaagcacggacactcctcggattaggtgtgtcctggtgtc 7918197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 376
Target Start/End: Complemental strand, 9103741 - 9103666
Alignment:
Q  300 tatgaagcacggacacttctcggattaggcgtgttccggtgtccgacactgacactcgtaattacactgaattatgt 376  Q
    |||||||||||||||||  |  |||||||||| || ||||||||||||| |||||| || |||| ||| ||||||||    
T  9103741 tatgaagcacggacactcttaagattaggcgtttttcggtgtccgacaccgacacttgt-attaaactaaattatgt 9103666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 339
Target Start/End: Complemental strand, 16812675 - 16812635
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggt 339  Q
    |||||||||||||||||| ||| |||||||||||| |||||    
T  16812675 ctatgaagcacggacactcctcagattaggcgtgtcccggt 16812635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 347
Target Start/End: Complemental strand, 32900010 - 32899962
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtccgaca 347  Q
    |||||||||| ||||| | ||||||||||| |||| |||||||||||||    
T  32900010 ctatgaagcaaggacaatcctcggattaggggtgtcccggtgtccgaca 32899962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 333
Target Start/End: Complemental strand, 34741967 - 34741931
Alignment:
Q  297 ccctatgaagcacggacacttctcggattaggcgtgt 333  Q
    ||||||||||||||||||||  |||||||||||||||    
T  34741967 ccctatgaagcacggacactcttcggattaggcgtgt 34741931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 299 - 376
Target Start/End: Complemental strand, 28155673 - 28155596
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacactgacactcgtaattacactgaattatgt 376  Q
    |||||||||||||||| | || ||||||||||||| | |||||||||||| |||||| |||||||||| |||||||||    
T  28155673 ctatgaagcacggacattccttggattaggcgtgtcctggtgtccgacaccgacacttgtaattacaccgaattatgt 28155596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 299 - 348
Target Start/End: Complemental strand, 598327 - 598278
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    ||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  598327 ctatgaagcacggacacttctcggattaggcgtgtcccggtgtcggacac 598278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 298 - 348
Target Start/End: Original strand, 5409770 - 5409820
Alignment:
Q  298 cctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    ||||||||||||||||||| |||||||||||||||| |||||||| |||||    
T  5409770 cctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacac 5409820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 299 - 376
Target Start/End: Complemental strand, 30813916 - 30813838
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacac-tgacactcgtaattacactgaattatgt 376  Q
    |||||||||||||||||| |||||||||||||||||| | |||| |||||   ||||  ||||||||||||||||||||    
T  30813916 ctatgaagcacggacactcctcggattaggcgtgttctgatgtcggacacgcaacacctgtaattacactgaattatgt 30813838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 299 - 347
Target Start/End: Complemental strand, 21880271 - 21880223
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtccgaca 347  Q
    ||||||||||||||||||||||||||||||||||| | |||||| ||||    
T  21880271 ctatgaagcacggacacttctcggattaggcgtgtcctggtgtcggaca 21880223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 354
Target Start/End: Complemental strand, 6490835 - 6490780
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacactgacac 354  Q
    |||||||||||||||||| ||||||||| |||||| |||||||| ||||| |||||    
T  6490835 ctatgaagcacggacactcctcggattaagcgtgtcccggtgtcggacaccgacac 6490780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 298 - 348
Target Start/End: Complemental strand, 9778625 - 9778575
Alignment:
Q  298 cctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    ||||||||||||||||||| || ||||||||||||| |||||||| |||||    
T  9778625 cctatgaagcacggacactccttggattaggcgtgtcccggtgtcggacac 9778575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 333
Target Start/End: Original strand, 29812598 - 29812632
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgt 333  Q
    |||||||||||||||||||||||||||||||||||    
T  29812598 ctatgaagcacggacacttctcggattaggcgtgt 29812632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 300 - 349
Target Start/End: Original strand, 32287404 - 32287453
Alignment:
Q  300 tatgaagcacggacacttctcggattaggcgtgttccggtgtccgacact 349  Q
    ||||||||||||||||| ||||||||||| |||| |||||||| ||||||    
T  32287404 tatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacact 32287453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 299 - 348
Target Start/End: Original strand, 43027404 - 43027453
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    ||||||||||||||||||  ||||||||||||||| |||||||| |||||    
T  43027404 ctatgaagcacggacactcatcggattaggcgtgtcccggtgtcggacac 43027453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 348
Target Start/End: Complemental strand, 13770810 - 13770766
Alignment:
Q  304 aagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    |||||||||||||  |||||||||||||||||||||||| |||||    
T  13770810 aagcacggacactcttcggattaggcgtgttccggtgtcggacac 13770766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 346
Target Start/End: Complemental strand, 35862071 - 35862023
Alignment:
Q  298 cctatgaagcacggacacttctcggattaggcgtgttccggtgtccgac 346  Q
    ||||||||||||||||||| |||||||||||||||| |  |||||||||    
T  35862071 cctatgaagcacggacactcctcggattaggcgtgtcctcgtgtccgac 35862023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 376
Target Start/End: Complemental strand, 19213912 - 19213829
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcg---tgttccggt---gtccgacactgacactcgtaattacactgaattatgt 376  Q
    |||||||||||||||||| |||||||||||||   ||| |||||   ||||||||| |||||| ||| |||||||| |||||||    
T  19213912 ctatgaagcacggacactcctcggattaggcggcgtgtcccggtcgtgtccgacaccgacacttgtatttacactgcattatgt 19213829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 342
Target Start/End: Complemental strand, 24339772 - 24339729
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtc 342  Q
    ||||||||||||| |||| |||||||||||||||| ||||||||    
T  24339772 ctatgaagcacgggcactcctcggattaggcgtgtcccggtgtc 24339729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 338 - 376
Target Start/End: Complemental strand, 21880216 - 21880178
Alignment:
Q  338 gtgtccgacactgacactcgtaattacactgaattatgt 376  Q
    ||||||||||| |||||| ||||||||||||||||||||    
T  21880216 gtgtccgacaccgacacttgtaattacactgaattatgt 21880178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 333
Target Start/End: Original strand, 29763129 - 29763163
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgt 333  Q
    |||||||||||||||||| ||||||||||||||||    
T  29763129 ctatgaagcacggacactcctcggattaggcgtgt 29763163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 348
Target Start/End: Complemental strand, 1433578 - 1433529
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    |||||||||||||||||| |||||||||| ||||| | |||||| |||||    
T  1433578 ctatgaagcacggacactcctcggattagacgtgtcctggtgtcggacac 1433529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 348
Target Start/End: Original strand, 10230024 - 10230073
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    |||||||||||||| ||| || |||| |||||||||| ||||||||||||    
T  10230024 ctatgaagcacggaaactccttggatcaggcgtgttctggtgtccgacac 10230073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 337
Target Start/End: Original strand, 18035806 - 18035843
Alignment:
Q  300 tatgaagcacggacacttctcggattaggcgtgttccg 337  Q
    ||||||||||||||||| |||||||||| |||||||||    
T  18035806 tatgaagcacggacactcctcggattagacgtgttccg 18035843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 342
Target Start/End: Original strand, 8842282 - 8842322
Alignment:
Q  302 tgaagcacggacacttctcggattaggcgtgttccggtgtc 342  Q
    ||||||||||||||| || ||||||||||||| ||||||||    
T  8842282 tgaagcacggacactccttggattaggcgtgtcccggtgtc 8842322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 347
Target Start/End: Original strand, 40287306 - 40287350
Alignment:
Q  303 gaagcacggacacttctcggattaggcgtgttccggtgtccgaca 347  Q
    |||||||||||||| |||||||||||| ||| |||||||| ||||    
T  40287306 gaagcacggacactcctcggattaggcatgtcccggtgtcggaca 40287350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 297 - 365
Target Start/End: Complemental strand, 30094134 - 30094066
Alignment:
Q  297 ccctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacactgacactcgtaattaca 365  Q
    ||||||| ||||||||||||  ||||||||||||||| |||||||||||||| |||||| |||||||||    
T  30094134 ccctatgtagcacggacactcttcggattaggcgtgtcccggtgtccgacaccgacacttgtaattaca 30094066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 298 - 376
Target Start/End: Complemental strand, 30299049 - 30298973
Alignment:
Q  298 cctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacactgacactcgtaattacactgaattatgt 376  Q
    ||||||||||||||||||| |||||||||| ||||| |||  |  |||||| |||||| ||||||||||||||||||||    
T  30299049 cctatgaagcacggacactcctcggattagacgtgtcccg--gcacgacaccgacacttgtaattacactgaattatgt 30298973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 298 - 376
Target Start/End: Complemental strand, 30327917 - 30327841
Alignment:
Q  298 cctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacactgacactcgtaattacactgaattatgt 376  Q
    ||||||||||||||||||| |||||||||| ||||| |||  |  |||||| |||||| ||||||||||||||||||||    
T  30327917 cctatgaagcacggacactcctcggattagacgtgtcccg--gcacgacaccgacacttgtaattacactgaattatgt 30327841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 299 - 341
Target Start/End: Original strand, 35157925 - 35157967
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgt 341  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  35157925 ctatgaagcacggacacttctcggattaagcgtgttccggtgt 35157967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 298 - 348
Target Start/End: Complemental strand, 35161156 - 35161106
Alignment:
Q  298 cctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    |||||||||||||||||||| |||||||||| ||||||||||||| |||||    
T  35161156 cctatgaagcacggacacttttcggattaggtgtgttccggtgtcggacac 35161106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 299 - 376
Target Start/End: Complemental strand, 37203371 - 37203290
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgt-----ccgacactgacactcgtaattacactgaattatgt 376  Q
    ||||||||||||||||||||||||||||| ||||| |||||||     |||||||| ||||| ||||||||||| ||||||||    
T  37203371 ctatgaagcacggacacttctcggattagacgtgtcccggtgtcggacccgacact-acacttgtaattacactaaattatgt 37203290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 299 - 376
Target Start/End: Original strand, 10499227 - 10499303
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacactgacactcgtaattacactgaattatgt 376  Q
    |||||||||||||||| | ||||||||||||||||  ||| |||||||||||||||   |||||||||| ||||||||    
T  10499227 ctatgaagcacggacaatcctcggattaggcgtgtgtcgg-gtccgacactgacacatataattacactaaattatgt 10499303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 299 - 348
Target Start/End: Original strand, 23292926 - 23292975
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    |||||||||||||||||| |||||||||||||||| |||||||| |||||    
T  23292926 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacac 23292975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 299 - 347
Target Start/End: Complemental strand, 12708261 - 12708213
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtccgaca 347  Q
    ||||||||||||||| || |||||||||||||||||||| |||||||||    
T  12708261 ctatgaagcacggacgctcctcggattaggcgtgttccgatgtccgaca 12708213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 333
Target Start/End: Original strand, 18844423 - 18844457
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgt 333  Q
    |||||||||||||||||||||||||||||||||||    
T  18844423 ctatgaagcacggacacttctcggattaggcgtgt 18844457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 347
Target Start/End: Original strand, 715545 - 715593
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtccgaca 347  Q
    |||||||||||||||||| |||||||||||||||| || ||||| ||||    
T  715545 ctatgaagcacggacactcctcggattaggcgtgtccctgtgtcggaca 715593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 347
Target Start/End: Original strand, 752871 - 752919
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtccgaca 347  Q
    |||||||||||||||||| |||||||||||||||| || ||||| ||||    
T  752871 ctatgaagcacggacactcctcggattaggcgtgtccctgtgtcggaca 752919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 338
Target Start/End: Original strand, 5775303 - 5775343
Alignment:
Q  298 cctatgaagcacggacacttctcggattaggcgtgttccgg 338  Q
    ||||||||||||||||||| |||||||||||||||| ||||    
T  5775303 cctatgaagcacggacactcctcggattaggcgtgtcccgg 5775343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 347
Target Start/End: Original strand, 8423658 - 8423706
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtccgaca 347  Q
    |||||| ||||||||||||||| |||||||||||| |||||||| ||||    
T  8423658 ctatgacgcacggacacttctccgattaggcgtgtcccggtgtcggaca 8423706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 354
Target Start/End: Original strand, 11596296 - 11596352
Alignment:
Q  298 cctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacactgacac 354  Q
    ||||||||||||||||||| ||| |||||||||||| ||| |||| |||| ||||||    
T  11596296 cctatgaagcacggacactcctcagattaggcgtgtcccgatgtcggacaatgacac 11596352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 375
Target Start/End: Original strand, 17425348 - 17425421
Alignment:
Q  300 tatgaagcacggacacttctcggattaggcgtgttccggtgtccgacactgacactcgtaattacactgaattatg 375  Q
    |||||||||| |||||| |||||||||||||||| |  ||||| ||||| ||||  | ||||||||||||||||||    
T  17425348 tatgaagcacagacactcctcggattaggcgtgtccttgtgtctgacacagaca--cataattacactgaattatg 17425421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 40784073 - 40784029
Alignment:
Q  298 cctatgaagcacggacacttctcggattaggcgtgttccggtgtc 342  Q
    ||||||||||||||||||| ||||||||||| |||| ||||||||    
T  40784073 cctatgaagcacggacactcctcggattaggtgtgtcccggtgtc 40784029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 53381529 - 53381573
Alignment:
Q  298 cctatgaagcacggacacttctcggattaggcgtgttccggtgtc 342  Q
    ||||||||||||||||||| ||||||||||| |||| ||||||||    
T  53381529 cctatgaagcacggacactcctcggattaggtgtgtcccggtgtc 53381573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 298 - 333
Target Start/End: Original strand, 3064867 - 3064902
Alignment:
Q  298 cctatgaagcacggacacttctcggattaggcgtgt 333  Q
    ||||||||||||||||||| ||||||||||||||||    
T  3064867 cctatgaagcacggacactcctcggattaggcgtgt 3064902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 376
Target Start/End: Original strand, 22440559 - 22440633
Alignment:
Q  301 atgaagcacggacacttctcggattaggcgtgttccggtgtccgacactgacactcgtaattacactgaattatgt 376  Q
    |||||||||||||||| |||||||||||||||| |  ||||| ||||| | |||   |||||||||||||||||||    
T  22440559 atgaagcacggacactcctcggattaggcgtgtcctagtgtcggacac-gtcacatataattacactgaattatgt 22440633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 342
Target Start/End: Complemental strand, 36635449 - 36635406
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtc 342  Q
    ||||||||||||||||||  ||||||||||||||| ||||||||    
T  36635449 ctatgaagcacggacactcttcggattaggcgtgtcccggtgtc 36635406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 333
Target Start/End: Original strand, 3144587 - 3144621
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgt 333  Q
    |||||||||||||||||||||||||||||| ||||    
T  3144587 ctatgaagcacggacacttctcggattaggtgtgt 3144621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 342
Target Start/End: Complemental strand, 4383484 - 4383443
Alignment:
Q  300 tatgaagcacggacacttctcggattaggcgtgttccggtgtc 342  Q
    ||||||||||||||||| ||||||||||||||| |||||||||    
T  4383484 tatgaagcacggacactcctcggattaggcgtg-tccggtgtc 4383443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 338 - 376
Target Start/End: Original strand, 12797333 - 12797371
Alignment:
Q  338 gtgtccgacactgacactcgtaattacactgaattatgt 376  Q
    ||||||||||| |||||| ||||||||||||||||||||    
T  12797333 gtgtccgacaccgacacttgtaattacactgaattatgt 12797371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 348
Target Start/End: Original strand, 18513174 - 18513224
Alignment:
Q  298 cctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    ||||||||||||||||||| ||| |||||||||||| | |||||| |||||    
T  18513174 cctatgaagcacggacactcctcagattaggcgtgtcctggtgtcggacac 18513224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 348
Target Start/End: Complemental strand, 28084640 - 28084594
Alignment:
Q  302 tgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    ||||||||||||||| |||||||||||||||| || ||||| |||||    
T  28084640 tgaagcacggacactcctcggattaggcgtgtcccagtgtcggacac 28084594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 338 - 376
Target Start/End: Original strand, 28964243 - 28964281
Alignment:
Q  338 gtgtccgacactgacactcgtaattacactgaattatgt 376  Q
    ||||||||||| |||||| ||||||||||||||||||||    
T  28964243 gtgtccgacacagacacttgtaattacactgaattatgt 28964281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 338 - 376
Target Start/End: Complemental strand, 42640593 - 42640555
Alignment:
Q  338 gtgtccgacactgacactcgtaattacactgaattatgt 376  Q
    ||||||||||| |||||| ||||||||||||||||||||    
T  42640593 gtgtccgacaccgacacttgtaattacactgaattatgt 42640555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 338 - 375
Target Start/End: Complemental strand, 16073458 - 16073421
Alignment:
Q  338 gtgtccgacactgacactcgtaattacactgaattatg 375  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  16073458 gtgtccgacaccgacacttgtaattacactgaattatg 16073421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 348
Target Start/End: Complemental strand, 16886726 - 16886677
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    |||| ||||||||||||||||  |||||| |||||||||||||| |||||    
T  16886726 ctatcaagcacggacacttctgagattagccgtgttccggtgtcggacac 16886677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 339 - 376
Target Start/End: Complemental strand, 21945566 - 21945529
Alignment:
Q  339 tgtccgacactgacactcgtaattacactgaattatgt 376  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  21945566 tgtccgacaccgacacttgtaattacactgaattatgt 21945529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 348
Target Start/End: Complemental strand, 24343632 - 24343583
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    |||||||||||||||||| ||| || ||||||||| |||||||| |||||    
T  24343632 ctatgaagcacggacactcctcagaataggcgtgtcccggtgtcggacac 24343583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 348
Target Start/End: Original strand, 3947702 - 3947750
Alignment:
Q  300 tatgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    ||||||||||||||||| ||||||||||| |||| | |||||| |||||    
T  3947702 tatgaagcacggacactcctcggattaggtgtgtcctggtgtcggacac 3947750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 343 - 375
Target Start/End: Original strand, 3947766 - 3947798
Alignment:
Q  343 cgacactgacactcgtaattacactgaattatg 375  Q
    ||||||||||||| |||||||||||||||||||    
T  3947766 cgacactgacacttgtaattacactgaattatg 3947798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 376
Target Start/End: Complemental strand, 16189813 - 16189735
Alignment:
Q  301 atgaagcacggacacttctcggattaggcgtgttccgg---tgtccgacactgacactcgtaattacactgaattatgt 376  Q
    |||||||| ||||||||||| |||||| | ||| ||||   |||||| ||| ||||| | |||||||||||||||||||    
T  16189813 atgaagcatggacacttctcagattagccatgtcccggctgtgtccgtcaccgacacacataattacactgaattatgt 16189735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 354
Target Start/End: Complemental strand, 20633591 - 20633535
Alignment:
Q  298 cctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacactgacac 354  Q
    ||||||||||||| ||||| || |||||||||||||   |||||||||||| |||||    
T  20633591 cctatgaagcacgaacactccttggattaggcgtgtcttggtgtccgacaccgacac 20633535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 347
Target Start/End: Complemental strand, 29205587 - 29205539
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtccgaca 347  Q
    |||||||||||| ||||| |||||||||||||||| || ||||| ||||    
T  29205587 ctatgaagcacgaacactcctcggattaggcgtgtcccagtgtcggaca 29205539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 348
Target Start/End: Original strand, 30982808 - 30982856
Alignment:
Q  300 tatgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    |||||||||||||||||  | ||||||||||||| |||||||| |||||    
T  30982808 tatgaagcacggacactctttggattaggcgtgtcccggtgtcggacac 30982856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 298 - 348
Target Start/End: Complemental strand, 27213645 - 27213595
Alignment:
Q  298 cctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  27213645 cctatgaagcacggacacttctcggattagccgtgtcccggtgtccgacac 27213595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 299 - 342
Target Start/End: Original strand, 15816058 - 15816101
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtc 342  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  15816058 ctatgaagcacggacacttctcggattaggcgtgtcccggtgtc 15816101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 300 - 347
Target Start/End: Original strand, 24205749 - 24205796
Alignment:
Q  300 tatgaagcacggacacttctcggattaggcgtgttccggtgtccgaca 347  Q
    |||||| |||||||||| ||||||||||||||||||||||||| ||||    
T  24205749 tatgaaacacggacactcctcggattaggcgtgttccggtgtcagaca 24205796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 298 - 348
Target Start/End: Original strand, 29510232 - 29510282
Alignment:
Q  298 cctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    ||||||||||||||||||| ||||||||||| |||| |||||||| |||||    
T  29510232 cctatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacac 29510282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 333
Target Start/End: Complemental strand, 39820547 - 39820513
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgt 333  Q
    |||||||||||||||||||||||||||||||||||    
T  39820547 ctatgaagcacggacacttctcggattaggcgtgt 39820513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 299 - 376
Target Start/End: Complemental strand, 4948754 - 4948678
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacactgacactcgtaattacactgaattatgt 376  Q
    |||||||||||| |||||  |  ||||||||||||  || |||||||||| |||||| ||||||||||||||||||||    
T  4948754 ctatgaagcacgtacactcattcgattaggcgtgtctcg-tgtccgacaccgacacttgtaattacactgaattatgt 4948678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 299 - 348
Target Start/End: Complemental strand, 22652106 - 22652057
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    |||||||||||||||||| |||||||||| ||||| |||||||| |||||    
T  22652106 ctatgaagcacggacactcctcggattagacgtgtcccggtgtcggacac 22652057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 299 - 376
Target Start/End: Complemental strand, 24669536 - 24669459
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacactgacactcgtaattacactgaattatgt 376  Q
    |||||||||| |||| ||  ||||||||||| ||| | | ||| |||||| |||||| ||||||||||||||||||||    
T  24669536 ctatgaagcatggacgctcatcggattaggcatgtcctgatgttcgacaccgacacttgtaattacactgaattatgt 24669459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 4673353 - 4673397
Alignment:
Q  298 cctatgaagcacggacacttctcggattaggcgtgttccggtgtc 342  Q
    |||||||||||| |||||| || ||||||||||||||||||||||    
T  4673353 cctatgaagcacagacactccttggattaggcgtgttccggtgtc 4673397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 348
Target Start/End: Complemental strand, 8343089 - 8343037
Alignment:
Q  296 cccctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    |||||||||||||| ||||||  ||||||||||||||| |||||||| |||||    
T  8343089 cccctatgaagcacagacactcttcggattaggcgtgtcccggtgtcggacac 8343037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 348
Target Start/End: Complemental strand, 8343449 - 8343397
Alignment:
Q  296 cccctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    |||||||||||||| ||||||  ||||||||||||||| |||||||| |||||    
T  8343449 cccctatgaagcacagacactcttcggattaggcgtgtcccggtgtcggacac 8343397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 342
Target Start/End: Complemental strand, 17751775 - 17751732
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtc 342  Q
    ||||||||| |||||||| |||||||||||||||| ||||||||    
T  17751775 ctatgaagcgcggacactcctcggattaggcgtgtcccggtgtc 17751732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 342
Target Start/End: Complemental strand, 17760762 - 17760719
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtc 342  Q
    ||||||||| |||||||| |||||||||||||||| ||||||||    
T  17760762 ctatgaagcgcggacactcctcggattaggcgtgtcccggtgtc 17760719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 376
Target Start/End: Complemental strand, 31514973 - 31514899
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacactgacactcgtaattacactgaattatgt 376  Q
    |||||||||||||||||| ||||||||||||||||    |||||| ||||  ||||| ||| |||| |||||||||||    
T  31514973 ctatgaagcacggacactcctcggattaggcgtgt---cgtgtccaacaccaacacttgtagttacgctgaattatgt 31514899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 348
Target Start/End: Original strand, 15131733 - 15131783
Alignment:
Q  298 cctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    |||||||||||||||||| ||| ||| |||||||||  |||||||||||||    
T  15131733 cctatgaagcacggacacctctaggactaggcgtgtcgcggtgtccgacac 15131783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 348
Target Start/End: Original strand, 22197670 - 22197720
Alignment:
Q  298 cctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    ||||| ||||||||||||| ||| ||||||||||| ||||||||| |||||    
T  22197670 cctataaagcacggacactcctcagattaggcgtgatccggtgtcggacac 22197720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 333
Target Start/End: Original strand, 24413499 - 24413533
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgt 333  Q
    ||||||||||||||||||||||||||||| |||||    
T  24413499 ctatgaagcacggacacttctcggattagacgtgt 24413533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 348
Target Start/End: Original strand, 3951476 - 3951525
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    |||||||||||||| ||| || |||||||||||||||| ||||| |||||    
T  3951476 ctatgaagcacggaaactccttggattaggcgtgttcccgtgtcagacac 3951525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 335
Target Start/End: Original strand, 24727684 - 24727717
Alignment:
Q  302 tgaagcacggacacttctcggattaggcgtgttc 335  Q
    ||||||||| ||||||||||||||||||||||||    
T  24727684 tgaagcacgaacacttctcggattaggcgtgttc 24727717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 348
Target Start/End: Original strand, 36450694 - 36450743
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    ||||||||||| |||||| |||||||||||||||| | |||||| |||||    
T  36450694 ctatgaagcacagacactcctcggattaggcgtgtcctggtgtcggacac 36450743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 347
Target Start/End: Original strand, 6065586 - 6065634
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtccgaca 347  Q
    |||||||||||||||||| || | |||| ||||||||||||||| ||||    
T  6065586 ctatgaagcacggacactccttgaattatgcgtgttccggtgtcggaca 6065634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 347
Target Start/End: Complemental strand, 11803389 - 11803341
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtccgaca 347  Q
    |||||||||||||||||| |||||||||| ||||| || ||||| ||||    
T  11803389 ctatgaagcacggacactcctcggattagacgtgtacctgtgtcggaca 11803341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 341
Target Start/End: Complemental strand, 16988030 - 16987990
Alignment:
Q  301 atgaagcacggacacttctcggattaggcgtgttccggtgt 341  Q
    |||||||||||||||| ||||||||||| |||| |||||||    
T  16988030 atgaagcacggacactcctcggattaggggtgtcccggtgt 16987990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 338 - 374
Target Start/End: Complemental strand, 22204705 - 22204669
Alignment:
Q  338 gtgtccgacactgacactcgtaattacactgaattat 374  Q
    ||||| |||||||||||| ||||||||||||||||||    
T  22204705 gtgtctgacactgacacttgtaattacactgaattat 22204669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 348
Target Start/End: Original strand, 29447040 - 29447088
Alignment:
Q  300 tatgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    ||||||||||||||||| || ||||||||||||| | |||||| |||||    
T  29447040 tatgaagcacggacactcctaggattaggcgtgtcctggtgtcagacac 29447088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 299 - 348
Target Start/End: Complemental strand, 241724 - 241675
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    ||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  241724 ctatgaagcacggacacttctcggattaggcgtgtcccggtgtcggacac 241675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 38)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 299 - 374
Target Start/End: Complemental strand, 7938219 - 7938144
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacactgacactcgtaattacactgaattat 374  Q
    |||||||||||||||||| ||||||| ||||||||  ||||||| ||||| ||||||  |||||||||| ||||||    
T  7938219 ctatgaagcacggacactcctcggatcaggcgtgtctcggtgtcggacaccgacacttataattacactaaattat 7938144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 302 - 376
Target Start/End: Original strand, 9025448 - 9025527
Alignment:
Q  302 tgaagcacggacacttctcggattaggcgtgttccggtgtc-----cgacactgacactcgtaattacactgaattatgt 376  Q
    |||||||||||||||||||||||||||||||| ||||||||     |||||| |||||   |||||||||||||||||||    
T  9025448 tgaagcacggacacttctcggattaggcgtgtcccggtgtcggacacgacaccgacacatataattacactgaattatgt 9025527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 300 - 376
Target Start/End: Complemental strand, 1700454 - 1700378
Alignment:
Q  300 tatgaagcacggacacttctcggattaggcgtgttccggtgtccgacactgacactcgtaattacactgaattatgt 376  Q
    |||||| |||||||||| || | ||||||||| ||| |||||||||||| ||||||  ||||||||||||| |||||    
T  1700454 tatgaaacacggacactccttgaattaggcgtattctggtgtccgacaccgacacttataattacactgaaatatgt 1700378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 318 - 374
Target Start/End: Original strand, 21924910 - 21924966
Alignment:
Q  318 ctcggattaggcgtgttccggtgtccgacactgacactcgtaattacactgaattat 374  Q
    |||||||||||||||| |||||||||||||| |||||   |||||||||||||||||    
T  21924910 ctcggattaggcgtgtcccggtgtccgacaccgacacatataattacactgaattat 21924966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 298 - 348
Target Start/End: Original strand, 17327589 - 17327639
Alignment:
Q  298 cctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    ||||||||||||||||||| |||||||||||||||| || ||||| |||||    
T  17327589 cctatgaagcacggacactcctcggattaggcgtgtccctgtgtcagacac 17327639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 298 - 347
Target Start/End: Original strand, 12868615 - 12868664
Alignment:
Q  298 cctatgaagcacggacacttctcggattaggcgtgttccggtgtccgaca 347  Q
    |||||||||||| ||||||| |||||||||||||||||| ||||| ||||    
T  12868615 cctatgaagcaccgacacttatcggattaggcgtgttcccgtgtcggaca 12868664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 299 - 348
Target Start/End: Complemental strand, 34595253 - 34595204
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    |||||||||||||||||| ||||||||||| |||| |||||||| |||||    
T  34595253 ctatgaagcacggacactcctcggattaggtgtgtcccggtgtcagacac 34595204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 28715415 - 28715371
Alignment:
Q  298 cctatgaagcacggacacttctcggattaggcgtgttccggtgtc 342  Q
    ||||||||||||| |||||||||| ||||||||||| ||||||||    
T  28715415 cctatgaagcacgtacacttctcgaattaggcgtgtcccggtgtc 28715371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 348
Target Start/End: Complemental strand, 31959268 - 31959220
Alignment:
Q  300 tatgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    ||||||||||||||||| ||||||||||| |||| |||||||| |||||    
T  31959268 tatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacac 31959220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 339
Target Start/End: Original strand, 32839571 - 32839611
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggt 339  Q
    ||||||||||| ||||||||||||||||||||||| |||||    
T  32839571 ctatgaagcacagacacttctcggattaggcgtgtcccggt 32839611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 298 - 333
Target Start/End: Complemental strand, 4878062 - 4878027
Alignment:
Q  298 cctatgaagcacggacacttctcggattaggcgtgt 333  Q
    ||||||||||||||||||| ||||||||||||||||    
T  4878062 cctatgaagcacggacactcctcggattaggcgtgt 4878027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 342
Target Start/End: Complemental strand, 7378098 - 7378055
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtc 342  Q
    |||||||||||||||||||||| |||||| ||||| ||||||||    
T  7378098 ctatgaagcacggacacttctcagattagccgtgtcccggtgtc 7378055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 334
Target Start/End: Original strand, 7723199 - 7723234
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgtt 334  Q
    |||||||||||||||||| |||||||||||||||||    
T  7723199 ctatgaagcacggacactcctcggattaggcgtgtt 7723234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 333
Target Start/End: Complemental strand, 6389851 - 6389817
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgt 333  Q
    |||||||||||||||||||||||||||||| ||||    
T  6389851 ctatgaagcacggacacttctcggattaggagtgt 6389817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 338 - 376
Target Start/End: Original strand, 7977825 - 7977863
Alignment:
Q  338 gtgtccgacactgacactcgtaattacactgaattatgt 376  Q
    ||||||||||| |||||| ||||||||||||||||||||    
T  7977825 gtgtccgacaccgacacttgtaattacactgaattatgt 7977863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 348
Target Start/End: Original strand, 8365447 - 8365497
Alignment:
Q  298 cctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    ||||||||||||||| ||| |||||||||||||||| || ||||| |||||    
T  8365447 cctatgaagcacggagactcctcggattaggcgtgtcccagtgtcggacac 8365497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 348
Target Start/End: Original strand, 8389411 - 8389457
Alignment:
Q  302 tgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    ||||||||||||||| ||||||||||| |||| |||||||| |||||    
T  8389411 tgaagcacggacactcctcggattaggtgtgtcccggtgtcggacac 8389457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 348
Target Start/End: Original strand, 8776907 - 8776957
Alignment:
Q  298 cctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    ||||||||||||||||||| ||||||||||| ||||  ||||||| |||||    
T  8776907 cctatgaagcacggacactcctcggattaggtgtgtctcggtgtcggacac 8776957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 349
Target Start/End: Complemental strand, 19294744 - 19294694
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacact 349  Q
    ||||||||||| ||||| ||| |||||||||||||  ||||||||||||||    
T  19294744 ctatgaagcaccgacacctctaggattaggcgtgtcgcggtgtccgacact 19294694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 354
Target Start/End: Original strand, 21395262 - 21395308
Alignment:
Q  308 acggacacttctcggattaggcgtgttccggtgtccgacactgacac 354  Q
    ||||||||| || ||||||||||||| | ||||||||||||||||||    
T  21395262 acggacactccttggattaggcgtgtcctggtgtccgacactgacac 21395308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 341
Target Start/End: Original strand, 21424744 - 21424786
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgt 341  Q
    |||||||||||||||||||||| |||||| |||||| ||||||    
T  21424744 ctatgaagcacggacacttctcagattagccgtgtttcggtgt 21424786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 338 - 376
Target Start/End: Complemental strand, 28152162 - 28152124
Alignment:
Q  338 gtgtccgacactgacactcgtaattacactgaattatgt 376  Q
    ||||||||||| |||||| ||||||||||||||||||||    
T  28152162 gtgtccgacaccgacacttgtaattacactgaattatgt 28152124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 338 - 376
Target Start/End: Complemental strand, 28715359 - 28715321
Alignment:
Q  338 gtgtccgacactgacactcgtaattacactgaattatgt 376  Q
    ||||||||||| |||||| ||||||||||||||||||||    
T  28715359 gtgtccgacaccgacacttgtaattacactgaattatgt 28715321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 338 - 376
Target Start/End: Complemental strand, 34595198 - 34595160
Alignment:
Q  338 gtgtccgacactgacactcgtaattacactgaattatgt 376  Q
    ||||||||||| |||||| ||||||||||||||||||||    
T  34595198 gtgtccgacaccgacacttgtaattacactgaattatgt 34595160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 342
Target Start/End: Complemental strand, 5569866 - 5569825
Alignment:
Q  301 atgaagcacggacacttctcggattaggcgtgttccggtgtc 342  Q
    |||||||||||||||| ||| |||||||||||||| ||||||    
T  5569866 atgaagcacggacactcctcagattaggcgtgttcaggtgtc 5569825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 348
Target Start/End: Complemental strand, 7248488 - 7248439
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    |||||||||||||||||| |||||||| | ||||| |||||||| |||||    
T  7248488 ctatgaagcacggacactcctcggatttgacgtgtcccggtgtcggacac 7248439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 348
Target Start/End: Complemental strand, 7625235 - 7625186
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    |||||||||||| ||||| || |||||| ||||||||||||||| |||||    
T  7625235 ctatgaagcacgaacactccttggattaagcgtgttccggtgtcggacac 7625186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 348
Target Start/End: Original strand, 9107299 - 9107348
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    ||||||||||||| |||| ||||||||||| |||| |||||||| |||||    
T  9107299 ctatgaagcacgggcactcctcggattaggtgtgtcccggtgtcggacac 9107348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 348
Target Start/End: Complemental strand, 9658998 - 9658949
Alignment:
Q  300 tatgaagcacggacacttctcgga-ttaggcgtgttccggtgtccgacac 348  Q
    ||||||||||||||||| || ||| ||||||||||||||||||| |||||    
T  9658998 tatgaagcacggacactccttggaattaggcgtgttccggtgtcagacac 9658949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 347
Target Start/End: Original strand, 10339053 - 10339102
Alignment:
Q  298 cctatgaagcacggacacttctcggattaggcgtgttccggtgtccgaca 347  Q
    ||||||||||||||||||| ||| |||||||||||| || ||||| ||||    
T  10339053 cctatgaagcacggacactcctccgattaggcgtgtcccagtgtcggaca 10339102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 376
Target Start/End: Complemental strand, 12696383 - 12696350
Alignment:
Q  343 cgacactgacactcgtaattacactgaattatgt 376  Q
    ||||||||||||| ||||||||||||||||||||    
T  12696383 cgacactgacacttgtaattacactgaattatgt 12696350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 348
Target Start/End: Complemental strand, 16766827 - 16766778
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    |||||||||||||||| |  ||||||||||||||| |||||||| |||||    
T  16766827 ctatgaagcacggacattcttcggattaggcgtgtcccggtgtcggacac 16766778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 333
Target Start/End: Original strand, 17841530 - 17841563
Alignment:
Q  300 tatgaagcacggacacttctcggattaggcgtgt 333  Q
    ||||||||||||||||| ||||||||||||||||    
T  17841530 tatgaagcacggacactcctcggattaggcgtgt 17841563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 348
Target Start/End: Complemental strand, 28152217 - 28152168
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    |||||||||||| ||||| |||||||||||| ||| |||||||| |||||    
T  28152217 ctatgaagcacgaacactcctcggattaggcctgtcccggtgtcggacac 28152168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 376
Target Start/End: Complemental strand, 31384979 - 31384946
Alignment:
Q  343 cgacactgacactcgtaattacactgaattatgt 376  Q
    ||||||||||||| ||||||||||||||||||||    
T  31384979 cgacactgacacttgtaattacactgaattatgt 31384946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 341
Target Start/End: Complemental strand, 31385048 - 31385007
Alignment:
Q  300 tatgaagcacggacacttctcggattaggcgtgttccggtgt 341  Q
    ||||||||||||||||| || ||||||||||||| |||||||    
T  31385048 tatgaagcacggacactccttggattaggcgtgtcccggtgt 31385007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 338 - 374
Target Start/End: Original strand, 16388212 - 16388248
Alignment:
Q  338 gtgtccgacactgacactcgtaattacactgaattat 374  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  16388212 gtgtccgacaccgacacttgtaattacactgaattat 16388248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 347
Target Start/End: Original strand, 32511606 - 32511654
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtccgaca 347  Q
    |||||||||||||||||| ||| ||||||||||| |||| |||| ||||    
T  32511606 ctatgaagcacggacactcctccgattaggcgtgctccgatgtcagaca 32511654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 325 - 376
Target Start/End: Original strand, 10268468 - 10268519
Alignment:
Q  325 taggcgtgttccggtgtccgacactgacactcgtaattacactgaattatgt 376  Q
    |||||||||||||||||| |||||||||||| ||||||||||| ||||||||    
T  10268468 taggcgtgttccggtgtctgacactgacacttgtaattacactaaattatgt 10268519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 298 - 348
Target Start/End: Original strand, 41961578 - 41961628
Alignment:
Q  298 cctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    |||||||||||||||||||||||||||||||||||| || ||||| |||||    
T  41961578 cctatgaagcacggacacttctcggattaggcgtgtcccagtgtcggacac 41961628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 299 - 348
Target Start/End: Original strand, 34185052 - 34185101
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    |||||||||||||||||| |||||||||||||||| |||||||| |||||    
T  34185052 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacac 34185101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 299 - 376
Target Start/End: Complemental strand, 11610628 - 11610547
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacac----tgacactcgtaattacactgaattatgt 376  Q
    |||||||||||||||||| ||| |||||||||||| ||| |||| |||||    ||||||| |||| |||||||||||||||    
T  11610628 ctatgaagcacggacactcctcagattaggcgtgtcccgatgtcggacacgacttgacacttgtaactacactgaattatgt 11610547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 299 - 347
Target Start/End: Complemental strand, 20503584 - 20503536
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtccgaca 347  Q
    |||||||||||||||||| |||||||||||||||| |||||||| ||||    
T  20503584 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcagaca 20503536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 49651715 - 49651759
Alignment:
Q  298 cctatgaagcacggacacttctcggattaggcgtgttccggtgtc 342  Q
    ||||||||||||||||||||||||||||||| |||| ||||||||    
T  49651715 cctatgaagcacggacacttctcggattaggtgtgtcccggtgtc 49651759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 300 - 347
Target Start/End: Original strand, 8789489 - 8789536
Alignment:
Q  300 tatgaagcacggacacttctcggattaggcgtgttccggtgtccgaca 347  Q
    ||||||||||||||||| ||||||||||||||||  ||||||||||||    
T  8789489 tatgaagcacggacactcctcggattaggcgtgtctcggtgtccgaca 8789536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 298 - 348
Target Start/End: Complemental strand, 27903758 - 27903708
Alignment:
Q  298 cctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    |||||||||||||||||||||||||||||||| || ||| ||||| |||||    
T  27903758 cctatgaagcacggacacttctcggattaggcatgatccagtgtcagacac 27903708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 298 - 348
Target Start/End: Complemental strand, 40052432 - 40052382
Alignment:
Q  298 cctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    ||||||||||||| ||||| |||||||||||||||| |||||||| |||||    
T  40052432 cctatgaagcacgaacactcctcggattaggcgtgtcccggtgtcggacac 40052382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 299 - 348
Target Start/End: Complemental strand, 27505370 - 27505321
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    |||||||||||||||||| |||||||||||| ||| |||||||| |||||    
T  27505370 ctatgaagcacggacactcctcggattaggcatgtcccggtgtcggacac 27505321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 298 - 347
Target Start/End: Original strand, 40993274 - 40993323
Alignment:
Q  298 cctatgaagcacggacacttctcggattaggcgtgttccggtgtccgaca 347  Q
    ||||||||||| ||||||| |||||||||||||||| |||||||| ||||    
T  40993274 cctatgaagcatggacactcctcggattaggcgtgtcccggtgtcggaca 40993323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 299 - 348
Target Start/End: Complemental strand, 55401194 - 55401145
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    |||||||||||||||||| ||||||||||||||||  ||||||| |||||    
T  55401194 ctatgaagcacggacactcctcggattaggcgtgtctcggtgtcggacac 55401145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 14979269 - 14979225
Alignment:
Q  298 cctatgaagcacggacacttctcggattaggcgtgttccggtgtc 342  Q
    ||||||||||||||||||| ||||| |||||||||| ||||||||    
T  14979269 cctatgaagcacggacactcctcgggttaggcgtgtcccggtgtc 14979225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 348
Target Start/End: Original strand, 4987222 - 4987269
Alignment:
Q  301 atgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    |||||| ||||||||| |||||||||||||||| |||||||| |||||    
T  4987222 atgaagtacggacactcctcggattaggcgtgtcccggtgtcggacac 4987269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 311 - 374
Target Start/End: Complemental strand, 13414560 - 13414497
Alignment:
Q  311 gacacttctcggattaggcgtgttccggtgtccgacactgacactcgtaattacactgaattat 374  Q
    |||||||||||||| |||||||| || ||||||||||| |||||   |||||||| ||||||||    
T  13414560 gacacttctcggataaggcgtgtccctgtgtccgacaccgacacatataattacattgaattat 13414497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 333
Target Start/End: Original strand, 4990912 - 4990946
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgt 333  Q
    |||||||||||||||||| ||||||||||||||||    
T  4990912 ctatgaagcacggacactcctcggattaggcgtgt 4990946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 333
Target Start/End: Complemental strand, 8842448 - 8842414
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgt 333  Q
    |||||||||||||||||| ||||||||||||||||    
T  8842448 ctatgaagcacggacactcctcggattaggcgtgt 8842414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 337
Target Start/End: Complemental strand, 11252095 - 11252057
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccg 337  Q
    ||||||||||| |||||| ||||||||||||||||||||    
T  11252095 ctatgaagcacagacactcctcggattaggcgtgttccg 11252057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 342
Target Start/End: Complemental strand, 14217021 - 14216979
Alignment:
Q  300 tatgaagcacggacacttctcggattaggcgtgttccggtgtc 342  Q
    ||||||||||||||||||||||||||||| |||| || |||||    
T  14217021 tatgaagcacggacacttctcggattaggtgtgtcccagtgtc 14216979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 342
Target Start/End: Complemental strand, 14223150 - 14223108
Alignment:
Q  300 tatgaagcacggacacttctcggattaggcgtgttccggtgtc 342  Q
    ||||||||||||||||||||||||||||| |||| || |||||    
T  14223150 tatgaagcacggacacttctcggattaggtgtgtcccagtgtc 14223108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 338 - 376
Target Start/End: Complemental strand, 25775573 - 25775535
Alignment:
Q  338 gtgtccgacactgacactcgtaattacactgaattatgt 376  Q
    ||||||||||| |||||| ||||||||||||||||||||    
T  25775573 gtgtccgacaccgacacttgtaattacactgaattatgt 25775535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 342
Target Start/End: Complemental strand, 34910435 - 34910393
Alignment:
Q  300 tatgaagcacggacacttctcggattaggcgtgttccggtgtc 342  Q
    ||||||||||||||||| |||||||||| ||||| ||||||||    
T  34910435 tatgaagcacggacactcctcggattagacgtgtcccggtgtc 34910393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 349
Target Start/End: Complemental strand, 1509681 - 1509636
Alignment:
Q  304 aagcacggacacttctcggattaggcgtgttccggtgtccgacact 349  Q
    ||||||||||||| ||| |||||||||||| |||||||| ||||||    
T  1509681 aagcacggacactcctccgattaggcgtgtaccggtgtcggacact 1509636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 376
Target Start/End: Complemental strand, 14209172 - 14209139
Alignment:
Q  343 cgacactgacactcgtaattacactgaattatgt 376  Q
    ||||||||||||| ||||||||||||||||||||    
T  14209172 cgacactgacacttgtaattacactgaattatgt 14209139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 328
Target Start/End: Complemental strand, 17276846 - 17276817
Alignment:
Q  299 ctatgaagcacggacacttctcggattagg 328  Q
    ||||||||||||||||||||||||||||||    
T  17276846 ctatgaagcacggacacttctcggattagg 17276817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 342
Target Start/End: Complemental strand, 29508567 - 29508526
Alignment:
Q  301 atgaagcacggacacttctcggattaggcgtgttccggtgtc 342  Q
    ||||||||||||||||||| ||||||| ||||| ||||||||    
T  29508567 atgaagcacggacacttcttggattagacgtgtcccggtgtc 29508526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 348
Target Start/End: Original strand, 15999951 - 15999999
Alignment:
Q  300 tatgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    ||||| ||||||||||| || ||||||||||||| |||||||| |||||    
T  15999951 tatgatgcacggacactccttggattaggcgtgtcccggtgtcggacac 15999999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 354
Target Start/End: Complemental strand, 21367382 - 21367330
Alignment:
Q  302 tgaagcacggacacttctcggattaggcgtgttccggtgtccgacactgacac 354  Q
    |||||||| |||||||||||||||||| |||| |  ||||||||||| |||||    
T  21367382 tgaagcacagacacttctcggattaggtgtgtccaagtgtccgacaccgacac 21367330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 298 - 348
Target Start/End: Complemental strand, 37419874 - 37419824
Alignment:
Q  298 cctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    ||||||||||||||||||| |||||||||||||||| |||||||| |||||    
T  37419874 cctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacac 37419824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 304 - 347
Target Start/End: Original strand, 23058389 - 23058432
Alignment:
Q  304 aagcacggacacttctcggattaggcgtgttccggtgtccgaca 347  Q
    |||||||||||||||||||||||||||||| |||||||| ||||    
T  23058389 aagcacggacacttctcggattaggcgtgtcccggtgtcggaca 23058432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 301 - 376
Target Start/End: Original strand, 42832234 - 42832309
Alignment:
Q  301 atgaagcacggacacttctcggattaggcgtgttccggtgtccgacactgacactcgtaattacactgaattatgt 376  Q
    |||||||| ||||||| || ||||||||||||| |||| ||| ||||| ||||||  ||||||||||||| |||||    
T  42832234 atgaagcaaggacactccttggattaggcgtgtcccggagtcggacaccgacacttataattacactgaaatatgt 42832309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 301 - 347
Target Start/End: Original strand, 2438661 - 2438707
Alignment:
Q  301 atgaagcacggacacttctcggattaggcgtgttccggtgtccgaca 347  Q
    |||||||||||||||| |||||||||||||||| |||||||| ||||    
T  2438661 atgaagcacggacactcctcggattaggcgtgtcccggtgtcggaca 2438707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 298 - 376
Target Start/End: Original strand, 19536360 - 19536430
Alignment:
Q  298 cctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacactgacactcgtaattacactgaattatgt 376  Q
    ||||||||||| ||||||| ||||||||||||||||        ||||||| |||||| ||||||||||||||||||||    
T  19536360 cctatgaagcatggacactcctcggattaggcgtgt--------ccgacaccgacacttgtaattacactgaattatgt 19536430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 299 - 348
Target Start/End: Complemental strand, 26769641 - 26769592
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    |||||||||||||||||| |||||||||||||||| || ||||| |||||    
T  26769641 ctatgaagcacggacactcctcggattaggcgtgtcccagtgtcggacac 26769592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 299 - 348
Target Start/End: Complemental strand, 37559096 - 37559047
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    |||||||||||||||||| ||||||||| |||||| |||||||| |||||    
T  37559096 ctatgaagcacggacactcctcggattaagcgtgtaccggtgtcggacac 37559047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 299 - 348
Target Start/End: Original strand, 38117099 - 38117148
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    |||||||||||||||||  |||||||||||||||| |||||||| |||||    
T  38117099 ctatgaagcacggacacccctcggattaggcgtgtcccggtgtcggacac 38117148  T

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Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 347
Target Start/End: Original strand, 11223793 - 11223841
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtccgaca 347  Q
    |||||||||||||||||| ||| |||||||||||| |||||||| ||||    
T  11223793 ctatgaagcacggacactcctcagattaggcgtgtcccggtgtcagaca 11223841  T

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Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 347
Target Start/End: Original strand, 18840953 - 18841001
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtccgaca 347  Q
    |||||||||||||||||| ||||||||||| |||| |||||||| ||||    
T  18840953 ctatgaagcacggacactcctcggattaggtgtgtcccggtgtcggaca 18841001  T

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Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 29176367 - 29176411
Alignment:
Q  298 cctatgaagcacggacacttctcggattaggcgtgttccggtgtc 342  Q
    ||||||||||| | ||||||||||||||||||||||| |||||||    
T  29176367 cctatgaagcatgaacacttctcggattaggcgtgtttcggtgtc 29176411  T

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Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 348
Target Start/End: Complemental strand, 19942382 - 19942335
Alignment:
Q  301 atgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    |||||||| ||||||| |||||||||||||||| |||||||| |||||    
T  19942382 atgaagcatggacactcctcggattaggcgtgtcccggtgtcagacac 19942335  T

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Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 338 - 376
Target Start/End: Original strand, 2438714 - 2438752
Alignment:
Q  338 gtgtccgacactgacactcgtaattacactgaattatgt 376  Q
    ||||||||||| |||||| ||||||||||||||||||||    
T  2438714 gtgtccgacaccgacacttgtaattacactgaattatgt 2438752  T

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Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 333
Target Start/End: Original strand, 18420363 - 18420397
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgt 333  Q
    ||||||||||| |||||||||||||||||||||||    
T  18420363 ctatgaagcacagacacttctcggattaggcgtgt 18420397  T

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Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 348
Target Start/End: Original strand, 32200609 - 32200659
Alignment:
Q  298 cctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    |||||||||||||||||| ||| ||| |||||||||  |||||||||||||    
T  32200609 cctatgaagcacggacacctctaggactaggcgtgtcgcggtgtccgacac 32200659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 348
Target Start/End: Original strand, 34006929 - 34006979
Alignment:
Q  298 cctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    ||||||||||||||||||| || | |||||| ||||||||||||| |||||    
T  34006929 cctatgaagcacggacactccttgaattaggtgtgttccggtgtcagacac 34006979  T

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Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 348
Target Start/End: Original strand, 10535685 - 10535734
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    |||||||||||| ||||| |||||||||||||||| | |||||| |||||    
T  10535685 ctatgaagcacgaacactcctcggattaggcgtgtcctggtgtcagacac 10535734  T

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Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 348
Target Start/End: Original strand, 14996171 - 14996208
Alignment:
Q  311 gacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    |||||| ||||||||||||||||||||||||| |||||    
T  14996171 gacactcctcggattaggcgtgttccggtgtcagacac 14996208  T

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Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 338 - 375
Target Start/End: Complemental strand, 21624331 - 21624294
Alignment:
Q  338 gtgtccgacactgacactcgtaattacactgaattatg 375  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  21624331 gtgtccgacaccgacacttgtaattacactgaattatg 21624294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 348
Target Start/End: Complemental strand, 35056998 - 35056949
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    |||||||||||||||||| ||| ||||||||||||| | ||||| |||||    
T  35056998 ctatgaagcacggacactcctcagattaggcgtgtttccgtgtcggacac 35056949  T

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Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 348
Target Start/End: Original strand, 42511322 - 42511371
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    |||||||||||||||||| |||||||||| ||||| || ||||| |||||    
T  42511322 ctatgaagcacggacactcctcggattagccgtgtccctgtgtcggacac 42511371  T

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Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 348
Target Start/End: Complemental strand, 17651681 - 17651633
Alignment:
Q  300 tatgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    |||||||||||||||| | | |||||||||||||  |||||||||||||    
T  17651681 tatgaagcacggacacctttaggattaggcgtgtcgcggtgtccgacac 17651633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 376
Target Start/End: Complemental strand, 23921355 - 23921279
Alignment:
Q  300 tatgaagcacggacacttctcggattaggcgtgttccggtgtccgacactgacactcgtaattacactgaattatgt 376  Q
    ||||||||||||||||| ||   ||||  ||||||||||||||||||||  | | |  |||||||||||||||||||    
T  23921355 tatgaagcacggacactccttaaattaaacgtgttccggtgtccgacaccaatatttataattacactgaattatgt 23921279  T

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Target: scaffold0086 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 342
Target Start/End: Complemental strand, 3058 - 3015
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtc 342  Q
    ||||| |||||||||||| |||||||||||||||||||||||||    
T  3058 ctatggagcacggacactcctcggattaggcgtgttccggtgtc 3015  T

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Target: scaffold0004 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 300 - 347
Target Start/End: Complemental strand, 92940 - 92893
Alignment:
Q  300 tatgaagcacggacacttctcggattaggcgtgttccggtgtccgaca 347  Q
    ||||||||||||||||| |||||||||||||||| | |||||||||||    
T  92940 tatgaagcacggacactcctcggattaggcgtgtccaggtgtccgaca 92893  T

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Target: scaffold0049 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 322 - 376
Target Start/End: Complemental strand, 63853 - 63799
Alignment:
Q  322 gattaggcgtgttccggtgtccgacactgacactcgtaattacactgaattatgt 376  Q
    ||||||| ||||||||||||| ||||| |||||| |||||| |||||||||||||    
T  63853 gattaggtgtgttccggtgtctgacaccgacacttgtaattgcactgaattatgt 63799  T

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Target: scaffold0475 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 298 - 343
Target Start/End: Complemental strand, 3428 - 3383
Alignment:
Q  298 cctatgaagcacggacacttctcggattaggcgtgttccggtgtcc 343  Q
    ||||||||||||||||||| |||||||||||||||| || ||||||    
T  3428 cctatgaagcacggacactcctcggattaggcgtgtcccagtgtcc 3383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0793 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 347
Target Start/End: Original strand, 4821 - 4869
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtccgaca 347  Q
    |||||||||||||||||| |||||||||||||||| || ||||| ||||    
T  4821 ctatgaagcacggacactcctcggattaggcgtgtccctgtgtcggaca 4869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 348
Target Start/End: Original strand, 403 - 451
Alignment:
Q  300 tatgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    ||||||||||||||||| ||||||||||| |||| |||||||| |||||    
T  403 tatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacac 451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 376
Target Start/End: Complemental strand, 20280 - 20198
Alignment:
Q  298 cctatgaagcacggac---acttctcggattaggcgtgttccggtgtc-cgacactgacactcgtaattacactgaattatgt 376  Q
    ||||||||||||||||   ||| |||||||||||||||| ||   | | ||||||||||||| ||||||||||||||||||||    
T  20280 cctatgaagcacggactgtactcctcggattaggcgtgtcccaccgacacgacactgacacttgtaattacactgaattatgt 20198  T

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Target: scaffold0168 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 298 - 333
Target Start/End: Complemental strand, 21150 - 21115
Alignment:
Q  298 cctatgaagcacggacacttctcggattaggcgtgt 333  Q
    ||||||||||||||| ||||||||||||||||||||    
T  21150 cctatgaagcacggatacttctcggattaggcgtgt 21115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 298 - 333
Target Start/End: Complemental strand, 21408 - 21373
Alignment:
Q  298 cctatgaagcacggacacttctcggattaggcgtgt 333  Q
    |||||||||||| |||||||||||||||||||||||    
T  21408 cctatgaagcacagacacttctcggattaggcgtgt 21373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 338 - 376
Target Start/End: Original strand, 45525 - 45563
Alignment:
Q  338 gtgtccgacactgacactcgtaattacactgaattatgt 376  Q
    ||||||||||| |||||| ||||||||||||||||||||    
T  45525 gtgtccgacaccgacacttgtaattacactgaattatgt 45563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 333
Target Start/End: Complemental strand, 46776 - 46742
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgt 333  Q
    |||||||||||||||||| ||||||||||||||||    
T  46776 ctatgaagcacggacactcctcggattaggcgtgt 46742  T

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Target: scaffold0019 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 348
Target Start/End: Complemental strand, 71856 - 71806
Alignment:
Q  298 cctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    |||||||||||| |||||| |||||||||| ||||| |||||||| |||||    
T  71856 cctatgaagcaccgacactcctcggattagtcgtgtcccggtgtcggacac 71806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0450 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 348
Target Start/End: Original strand, 8564 - 8613
Alignment:
Q  299 ctatgaagcacggacacttctcggattaggcgtgttccggtgtccgacac 348  Q
    |||||||||||||||||| |||| ||||||||||| || ||||| |||||    
T  8564 ctatgaagcacggacactcctcgaattaggcgtgtaccagtgtcggacac 8613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 376
Target Start/End: Original strand, 3849 - 3882
Alignment:
Q  343 cgacactgacactcgtaattacactgaattatgt 376  Q
    ||||||||||||| ||||||||||||||||||||    
T  3849 cgacactgacacttgtaattacactgaattatgt 3882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 333
Target Start/End: Original strand, 3776 - 3812
Alignment:
Q  297 ccctatgaagcacggacacttctcggattaggcgtgt 333  Q
    |||||||||||| ||||||| ||||||||||||||||    
T  3776 ccctatgaagcaaggacactcctcggattaggcgtgt 3812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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