View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10460_low_11 (Length: 376)
Name: NF10460_low_11
Description: NF10460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10460_low_11 |
 | |
|
| [»] scaffold0041 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0041 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 5 - 361
Target Start/End: Complemental strand, 96474 - 96118
Alignment:
| Q |
5 |
agagaatcaggccatgacggatcagcagcctgaacagaagcaacagttccgataaaccaacttatccttgatgagtcctcggtttcaatggccatcttga |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
96474 |
agagaatcaggccatgacggatcagcagcctgcacagaagcaacagttccgataaaccaacttatccttgatgagtcctcggtttcaatgggcatcttga |
96375 |
T |
|
| Q |
105 |
acctcattccaggacaccacctaatctgaagtgccattccaattaaagaagttttcacaaaaaactcaggagtacccgaccgaggaaaataaaccacatc |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
96374 |
acctcattccaggacaccacctaatctgaagtgtgattccaattaaagaagttttcacaaaaaactcaggagtacccgaccgaggataataaaccacatc |
96275 |
T |
|
| Q |
205 |
aaacggctgcatattagtaccgagtcttactgcttcaataacttctagaactttcaccttccccctacccatcattccatcacttattagtaatccattg |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
96274 |
aaacggctgcatattagtaccgagtcttactgcttcaataacttctagaactttcaccttccccctacccatcattccatcacttattagtaatccattg |
96175 |
T |
|
| Q |
305 |
cctttaccatttcttctaagtttattatcttcctcttctgaaaacgatgtaaatcct |
361 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
96174 |
cctttaccatttcttctaagtttattatcttcctcttctgaaaacgatgtaaatcct |
96118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 7 - 361
Target Start/End: Complemental strand, 88464 - 88110
Alignment:
| Q |
7 |
agaatcaggccatgacggatcagcagcctgaacagaagcaacagttccgataaaccaacttatccttgatgagtcctcggtttcaatggccatcttgaac |
106 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
88464 |
agaatcagaccatgacggatcagcagcctgaacagaagcaacagttccgataaaccaacttatccttgatgagtcctcggtttcaatggccatcttgaac |
88365 |
T |
|
| Q |
107 |
ctcattccaggacaccacctaatctgaagtgccattccaattaaagaagttttcacaaaaaactcaggagtacccgaccgaggaaaataaaccacatcaa |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
88364 |
ctcattccaggacaccacctaatctgaagtgccattccaattaaagaagttttcacaaaaaactcaggagtacccgaccgaggataataaaccacatcaa |
88265 |
T |
|
| Q |
207 |
acggctgcatattagtaccgagtcttactgcttcaataacttctagaactttcaccttccccctacccatcattccatcacttattagtaatccattgcc |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
88264 |
acggctgcatattagtaccgagtcttactgcttcaataacttctagagctttcaccttccccctacccatcattccatcacttattagcaatccattacc |
88165 |
T |
|
| Q |
307 |
tttaccatttcttctaagtttattatcttcctcttctgaaaacgatgtaaatcct |
361 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||| | |||||||||| ||||||| |
|
|
| T |
88164 |
tttaccgtttcttcgaagtttattatcttcctctcccgaaaacgatggaaatcct |
88110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 5 - 361
Target Start/End: Original strand, 40869808 - 40870164
Alignment:
| Q |
5 |
agagaatcaggccatgacggatcagcagcctgaacagaagcaacagttccgataaaccaacttatccttgatgagtcctcggtttcaatggccatcttga |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
40869808 |
agagaatcaggccatgacggatcagcagcctgcacagaagcaacagttccgataaaccaacttatccttgatgagtcctcggtttcaatgggcatcttga |
40869907 |
T |
|
| Q |
105 |
acctcattccaggacaccacctaatctgaagtgccattccaattaaagaagttttcacaaaaaactcaggagtacccgaccgaggaaaataaaccacatc |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
40869908 |
acctcattccaggacaccacctaatctgaagtgtgattccaattaaagaagttttcacaaaaaactcaggagtacccgaccgaggataataaaccacatc |
40870007 |
T |
|
| Q |
205 |
aaacggctgcatattagtaccgagtcttactgcttcaataacttctagaactttcaccttccccctacccatcattccatcacttattagtaatccattg |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40870008 |
aaacggctgcatattagtaccgagtcttactgcttcaataacttctagaactttcaccttccccctacccatcattccatcacttattagtaatccattg |
40870107 |
T |
|
| Q |
305 |
cctttaccatttcttctaagtttattatcttcctcttctgaaaacgatgtaaatcct |
361 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40870108 |
cctttaccatttcttctaagtttattatcttcctcttctgaaaacgatgtaaatcct |
40870164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 7 - 361
Target Start/End: Original strand, 40877819 - 40878173
Alignment:
| Q |
7 |
agaatcaggccatgacggatcagcagcctgaacagaagcaacagttccgataaaccaacttatccttgatgagtcctcggtttcaatggccatcttgaac |
106 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40877819 |
agaatcagaccatgacggatcagcagcctgaacagaagcaacagttccgataaaccaacttatccttgatgagtcctcggtttcaatggccatcttgaac |
40877918 |
T |
|
| Q |
107 |
ctcattccaggacaccacctaatctgaagtgccattccaattaaagaagttttcacaaaaaactcaggagtacccgaccgaggaaaataaaccacatcaa |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
40877919 |
ctcattccaggacaccacctaatctgaagtgccattccaattaaagaagttttcacaaaaaactcaggagtacccgaccgaggataataaaccacatcaa |
40878018 |
T |
|
| Q |
207 |
acggctgcatattagtaccgagtcttactgcttcaataacttctagaactttcaccttccccctacccatcattccatcacttattagtaatccattgcc |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
40878019 |
acggctgcatattagtaccgagtcttactgcttcaataacttctagagctttcaccttccccctacccatcattccatcacttattagcaatccattacc |
40878118 |
T |
|
| Q |
307 |
tttaccatttcttctaagtttattatcttcctcttctgaaaacgatgtaaatcct |
361 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||| | |||||||||| ||||||| |
|
|
| T |
40878119 |
tttaccgtttcttcgaagtttattatcttcctctcccgaaaacgatggaaatcct |
40878173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 23 - 123
Target Start/End: Complemental strand, 21716367 - 21716267
Alignment:
| Q |
23 |
ggatcagcagcctgaacagaagcaacagttccgataaaccaacttatccttgatgagtcctcggtttcaatggccatcttgaacctcattccaggacacc |
122 |
Q |
| |
|
|||||| || ||||||||||||| | ||||| ||||||||||| ||||| || ||||| || ||||||| || ||||||||||||||| |||| ||||| |
|
|
| T |
21716367 |
ggatcaacaacctgaacagaagcgattgttcccataaaccaactaatcctagaagagtcttcagtttcaaagggcatcttgaacctcatcccagaacacc |
21716268 |
T |
|
| Q |
123 |
a |
123 |
Q |
| |
|
| |
|
|
| T |
21716267 |
a |
21716267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 132
Target Start/End: Complemental strand, 28347416 - 28347335
Alignment:
| Q |
51 |
ttccgataaaccaacttatccttgatgagtcctcggtttcaatggccatcttgaacctcattccaggacaccacctaatctg |
132 |
Q |
| |
|
|||| |||||||||||||| | || || ||||||||||||| |||||||||||| || ||||||| |||||| | |||||| |
|
|
| T |
28347416 |
ttcccataaaccaacttattcgagacgaatcctcggtttcaaaggccatcttgaatcttattccagaacaccatcgaatctg |
28347335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 123
Target Start/End: Complemental strand, 42730825 - 42730737
Alignment:
| Q |
35 |
tgaacagaagcaacagttccgataaaccaacttatccttgatgagtcctcggtttcaatggccatcttgaacctcattccaggacacca |
123 |
Q |
| |
|
|||||||||| || |||||| ||||||||||| ||||| || || ||||| ||||||| | ||| ||||| ||||| |||| |||||| |
|
|
| T |
42730825 |
tgaacagaagaaatagttcccataaaccaactaatcctagaagaatcctcagtttcaaaaggcattttgaatctcataccagaacacca |
42730737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University