View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10460_low_12 (Length: 364)
Name: NF10460_low_12
Description: NF10460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10460_low_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 20988460 - 20988113
Alignment:
| Q |
1 |
ctctaaccctttatacgctggcgcaattttattcgctgaaagataaacaaccggaacaagatcatcaggtgtggcatgtatcacagtcctcaacagatta |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20988460 |
ctctaaccctttatacgccggcgcaattttattcgctgaaagataaacaaccggaacaagatcatcaggtgtggcatgtatcacagtcctcaacagatta |
20988361 |
T |
|
| Q |
101 |
cacacaatctcagtgatcacaattcttcccctctctttgctaatcaaatcgaacgctaaagagagaaacaaaaacggcacaggtttgtttttctcccagc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20988360 |
cacacaatctcagtgatcacaattcttcccctctctttgctaatcaaatcaaacgctaaagagagaaacaaaaacggcacaggtttgtttttctcccagc |
20988261 |
T |
|
| Q |
201 |
aaacaaccgaactcggatcgaaattctccggtttcttcttcagctccggaactttttccttcaattcagcgactatcccgttggaagaagatgaagtgtt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20988260 |
aaacaaccgaactcggatcgaaattctccggtttcttcttcagctccggaactttttccttcaattcagcgactatcccgttggaagaagatgaagtgtt |
20988161 |
T |
|
| Q |
301 |
gcggatcttgctcgatggatcttcatgaacggtttcttcgggattttg |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20988160 |
gcggatcttgctcgatggatcttcatgaacggtttcttcgggattttg |
20988113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 5 - 348
Target Start/End: Complemental strand, 20998688 - 20998345
Alignment:
| Q |
5 |
aaccctttatacgctggcgcaattttattcgctgaaagataaacaaccggaacaagatcatcaggtgtggcatgtatcacagtcctcaacagattacaca |
104 |
Q |
| |
|
||||||| || ||| ||||||||| |||||||||| | ||||||||| || |||||||| || ||||| |||||||||||||| ||||||| |||||||| |
|
|
| T |
20998688 |
aacccttcatgcgccggcgcaattctattcgctgataaataaacaacaggcacaagatcttccggtgtagcatgtatcacagttctcaacaaattacaca |
20998589 |
T |
|
| Q |
105 |
caatctcagtgatcacaattcttcccctctctttgctaatcaaatcgaacgctaaagagagaaacaaaaacggcacaggtttgtttttctcccagcaaac |
204 |
Q |
| |
|
|||| |||||||||||||| || || ||||||| | |||||| ||| ||||| ||| |||||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
20998588 |
caatgtcagtgatcacaatcctcccactctcttcgttaatcatatcaaacgccaaacagagaaacaaaaacggaacaggtttgtctttctcccagcaaac |
20998489 |
T |
|
| Q |
205 |
aaccgaactcggatcgaaattctccggtttcttcttcagctccggaactttttccttcaattcagcgactatcccgttggaagaagatgaagtgttgcgg |
304 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||||| |||||| ||||||||||||||||||||||| || || ||||| ||||| ||||| ||| |
|
|
| T |
20998488 |
aaccgaactcggatcgaaactcgccggtttcttcttcagctgcggaaccttttccttcaattcagcgactattcccttcgaagatgatgatgtgtttcgg |
20998389 |
T |
|
| Q |
305 |
atcttgctcgatggatcttcatgaacggtttcttcgggattttg |
348 |
Q |
| |
|
|||||||||| || ||||||||||| ||||||||||| ||||| |
|
|
| T |
20998388 |
atcttgctcggcggttcttcatgaacagtttcttcgggtttttg |
20998345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University