View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10460_low_13 (Length: 340)
Name: NF10460_low_13
Description: NF10460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10460_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 17 - 331
Target Start/End: Complemental strand, 33106180 - 33105853
Alignment:
| Q |
17 |
agatgcttcttcaattgcattaattaaactaaatttgtattatatgtattttcagagtaaagtattaatg--------ttgggtgtactgtgaaatctga |
108 |
Q |
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| T |
33106180 |
agatgcttcttcaattgcattaattaaactaaatttgtattatatgtattttcagagtaaagtattaatgaattaatgttgggtgtactgtgaaatctga |
33106081 |
T |
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| Q |
109 |
tctgaaaaatacttgttgtgttgaatttgtactagtagtgtaacaaacagtaataggtaggtgcaggtgtaatattgatgatctagtaagaagttgttga |
208 |
Q |
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| T |
33106080 |
tctgaaaaatacttgttgtgttgaatttgtactagtagtgtaacaaacagtaataggtaggtgcaggtgtaatattgatgatctagtaagaagttgttga |
33105981 |
T |
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| Q |
209 |
tgcagtgttatgtctg-aaatattaacagcgtaatgcttgcaaatagtaccgcaacagaatcaaatcagttaaggtatgat----tttgttgtcgtggct |
303 |
Q |
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| T |
33105980 |
tgcagtgttatgtctgaaaatattaacagcgtgatgcttgcaaatagtaccgcaacagaatcaaatcagttaagatatgattttgtttgttgtagtggct |
33105881 |
T |
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| Q |
304 |
ggcgtatatgtcgcacttcttttgtttc |
331 |
Q |
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| T |
33105880 |
ggcgtatatgtcgcactttgtttgtttc |
33105853 |
T |
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