View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10460_low_15 (Length: 336)
Name: NF10460_low_15
Description: NF10460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10460_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 11 - 313
Target Start/End: Complemental strand, 23348518 - 23348216
Alignment:
| Q |
11 |
cacagatatccaaatttgcataggccgaacatgtcctacactcctcaagatccatgatcttactaaaccacgatgaagacgtcgtgtctggaaatttcat |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
23348518 |
cacagatatccaaatttgcataggccgaacatgtcctacactcctcaagatccatgatcttactaaaccacgatgaagacttcgtgtctggaaatttcat |
23348419 |
T |
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| Q |
111 |
ttttacaatacctcaagaaaccatctttgtgactatttttgcaattagatttattcttcggaacacaaccattagactgatatgatatttgcaattgttg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23348418 |
ttttacaatacctcaagaaaccatctttgtgactatttttgcaattagatttattcttcggaacacaaccattagactgatatgatatttgcaattgttg |
23348319 |
T |
|
| Q |
211 |
aggaaacttaggaacgtagcctttcacacattcagaagtgggaacattcccatccatattgcatatagaataaccatcacacaaagcatagttttcggct |
310 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||| |
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| T |
23348318 |
aggaaacttaggaacgtagcctttcacacattcacaagtgggaacattcccattcatattgcatatagaataaccaccacacaaagcgtagttttcggct |
23348219 |
T |
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| Q |
311 |
ttt |
313 |
Q |
| |
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||| |
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| T |
23348218 |
ttt |
23348216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 177 - 313
Target Start/End: Original strand, 23363373 - 23363509
Alignment:
| Q |
177 |
aaccattagactgatatgatatttgcaattgttgaggaaacttaggaacgtagcctttcacacattcagaagtgggaacattcccatccatattgcatat |
276 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
23363373 |
aaccattagactgatatgatatttgccattgttgaggaaacttaggaacatagcctttcacacattcacaagtgggaacatttccatccatattgcatat |
23363472 |
T |
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| Q |
277 |
agaataaccatcacacaaagcatagttttcggctttt |
313 |
Q |
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| T |
23363473 |
agaataaccaccacacaaagaatagttttcggctttt |
23363509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 11 - 134
Target Start/End: Original strand, 23363259 - 23363378
Alignment:
| Q |
11 |
cacagatatccaaatttgcataggccgaacatgtcctacactcctcaagatccatgatcttactaaaccacgatgaagacgtcgtgtctggaaatttcat |
110 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
23363259 |
cacagatatccaaatttgcataggccgaacacgtcctacactcctcaagatccatgatcttactaaaccatgatgaaga---cgtgtctggaaatttca- |
23363354 |
T |
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| Q |
111 |
ttttacaatacctcaagaaaccat |
134 |
Q |
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|||||||||||||||||||||||| |
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| T |
23363355 |
ttttacaatacctcaagaaaccat |
23363378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 167 - 281
Target Start/End: Complemental strand, 23391859 - 23391745
Alignment:
| Q |
167 |
ttcggaacacaaccattagactgatatgatatttgcaattgttgaggaaacttaggaacgtagcctttcacacattcagaagtgggaacattcccatcca |
266 |
Q |
| |
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||||||||||||||| |||| ||||||||| | | |||||| ||||||||||||||| || | ||||| |||||| | | || ||||| ||||||| |
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| T |
23391859 |
ttcggaacacaaccaccagaccaatatgatatattccattgttcaggaaacttaggaacataacttttcaggcattcacatttcggcacattgccatcca |
23391760 |
T |
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| Q |
267 |
tattgcatatagaat |
281 |
Q |
| |
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||||||||||||||| |
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| T |
23391759 |
tattgcatatagaat |
23391745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 281
Target Start/End: Original strand, 23287552 - 23287643
Alignment:
| Q |
190 |
atatgatatttgcaattgttgaggaaacttaggaacgtagcctttcacacattcagaagtgggaacattcccatccatattgcatatagaat |
281 |
Q |
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||||||||| | | |||||| ||||||||||||||| || | ||||| |||||| | | || ||||| |||||||||||||||||||||| |
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| T |
23287552 |
atatgatatattccattgttcaggaaacttaggaacataacttttcaggcattcacatttcggcacattgccatccatattgcatatagaat |
23287643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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