View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10460_low_16 (Length: 336)

Name: NF10460_low_16
Description: NF10460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10460_low_16
NF10460_low_16
[»] chr8 (25 HSPs)
chr8 (133-336)||(6862746-6862949)
chr8 (1-132)||(5034898-5035030)
chr8 (1-132)||(34992180-34992312)
chr8 (1-132)||(38023624-38023756)
chr8 (1-132)||(41859310-41859442)
chr8 (4-133)||(5035197-5035325)
chr8 (1-132)||(32536708-32536840)
chr8 (1-125)||(37639718-37639843)
chr8 (2-127)||(32537405-32537528)
chr8 (1-132)||(34992015-34992147)
chr8 (178-257)||(6873504-6873582)
chr8 (1-89)||(41860012-41860101)
chr8 (275-336)||(6873415-6873476)
chr8 (1-46)||(38024447-38024492)
chr8 (92-132)||(44751608-44751648)
chr8 (91-132)||(44752577-44752618)
chr8 (91-143)||(39254776-39254828)
chr8 (87-132)||(44098425-44098469)
chr8 (96-132)||(61454-61490)
chr8 (96-132)||(1365829-1365865)
chr8 (4-72)||(7818534-7818601)
chr8 (4-72)||(10806008-10806075)
chr8 (4-72)||(38778754-38778821)
chr8 (96-132)||(39255764-39255800)
chr8 (4-72)||(39852762-39852829)
[»] chr1 (33 HSPs)
chr1 (1-132)||(23440781-23440913)
chr1 (1-132)||(48972361-48972493)
chr1 (1-132)||(193850-193980)
chr1 (1-132)||(9948804-9948935)
chr1 (1-132)||(16270207-16270340)
chr1 (1-133)||(23440616-23440748)
chr1 (1-132)||(43737894-43738026)
chr1 (1-132)||(16271064-16271196)
chr1 (1-132)||(43737729-43737861)
chr1 (1-132)||(9947995-9948127)
chr1 (1-132)||(51974437-51974569)
chr1 (1-128)||(6076784-6076911)
chr1 (1-132)||(48971705-48971837)
chr1 (1-132)||(51975143-51975275)
chr1 (1-132)||(38930312-38930444)
chr1 (1-132)||(50827007-50827138)
chr1 (4-118)||(6075988-6076101)
chr1 (4-108)||(12925897-12926000)
chr1 (14-127)||(38931177-38931290)
chr1 (1-108)||(31390741-31390847)
chr1 (38-88)||(27888715-27888765)
chr1 (4-88)||(47334243-47334327)
chr1 (96-132)||(35616787-35616823)
chr1 (1-133)||(194619-194750)
chr1 (7-88)||(20794333-20794413)
chr1 (32-133)||(47334848-47334949)
chr1 (4-72)||(7219068-7219135)
chr1 (92-132)||(8560839-8560879)
chr1 (96-132)||(35615767-35615803)
chr1 (21-73)||(37725438-37725489)
chr1 (4-72)||(51247888-51247955)
chr1 (4-72)||(51248442-51248509)
chr1 (96-132)||(51987827-51987863)
[»] chr3 (27 HSPs)
chr3 (1-127)||(32490111-32490238)
chr3 (4-127)||(36750050-36750173)
chr3 (1-132)||(36750354-36750485)
chr3 (4-132)||(52492199-52492327)
chr3 (1-127)||(45242071-45242198)
chr3 (1-132)||(19132728-19132860)
chr3 (1-132)||(41756348-41756480)
chr3 (1-132)||(19132563-19132695)
chr3 (1-132)||(38923581-38923713)
chr3 (1-132)||(41755499-41755631)
chr3 (1-132)||(44687079-44687211)
chr3 (1-127)||(3970997-3971124)
chr3 (1-127)||(38922748-38922875)
chr3 (3-127)||(3998759-3998884)
chr3 (1-133)||(52491890-52492018)
chr3 (1-132)||(3971818-3971950)
chr3 (1-132)||(3997928-3998060)
chr3 (1-132)||(44686255-44686386)
chr3 (1-132)||(45242903-45243035)
chr3 (1-132)||(32489946-32490078)
chr3 (18-88)||(45500517-45500586)
chr3 (1-90)||(8440127-8440215)
chr3 (4-72)||(8427276-8427343)
chr3 (84-132)||(17227948-17227996)
chr3 (92-132)||(31556224-31556264)
chr3 (96-134)||(17226966-17227004)
chr3 (4-72)||(47737632-47737699)
[»] chr7 (19 HSPs)
chr7 (1-132)||(38071898-38072030)
chr7 (1-133)||(17145621-17145755)
chr7 (3-127)||(7677422-7677547)
chr7 (1-132)||(668179-668311)
chr7 (4-132)||(38072211-38072339)
chr7 (4-127)||(4261210-4261333)
chr7 (1-133)||(669019-669152)
chr7 (1-132)||(37864223-37864355)
chr7 (18-132)||(38779498-38779611)
chr7 (15-132)||(38778854-38778971)
chr7 (1-132)||(4261512-4261644)
chr7 (1-132)||(41194513-41194642)
chr7 (4-127)||(7677730-7677852)
chr7 (1-132)||(17145788-17145920)
chr7 (53-133)||(37468974-37469054)
chr7 (1-133)||(41195284-41195415)
chr7 (4-73)||(32859292-32859360)
chr7 (75-132)||(37468910-37468967)
chr7 (4-72)||(27855625-27855692)
[»] chr6 (15 HSPs)
chr6 (1-132)||(33018167-33018299)
chr6 (1-132)||(33480544-33480676)
chr6 (1-132)||(15083234-15083366)
chr6 (1-127)||(15082402-15082529)
chr6 (1-125)||(33018332-33018457)
chr6 (1-132)||(3542979-3543111)
chr6 (1-127)||(33479701-33479829)
chr6 (1-132)||(22579935-22580067)
chr6 (1-127)||(3542819-3542946)
chr6 (1-132)||(7193338-7193467)
chr6 (1-132)||(7193494-7193626)
chr6 (1-127)||(22587226-22587353)
chr6 (25-127)||(22582420-22582522)
chr6 (91-135)||(9574578-9574622)
chr6 (92-132)||(24126726-24126766)
[»] chr5 (16 HSPs)
chr5 (1-132)||(8040195-8040327)
chr5 (1-132)||(33002732-33002864)
chr5 (1-133)||(15183933-15184066)
chr5 (1-132)||(8204120-8204252)
chr5 (1-132)||(15183088-15183221)
chr5 (1-132)||(686417-686548)
chr5 (4-127)||(33001937-33002059)
chr5 (1-132)||(36626546-36626678)
chr5 (1-127)||(687264-687391)
chr5 (1-132)||(12190075-12190206)
chr5 (1-132)||(8040360-8040492)
chr5 (1-75)||(42518809-42518883)
chr5 (41-102)||(33685775-33685836)
chr5 (95-132)||(39950443-39950480)
chr5 (92-128)||(39167448-39167484)
chr5 (96-132)||(39950404-39950440)
[»] chr4 (33 HSPs)
chr4 (1-132)||(10424123-10424255)
chr4 (1-132)||(11417687-11417819)
chr4 (1-132)||(21166291-21166423)
chr4 (14-134)||(11417867-11417987)
chr4 (3-132)||(26611201-26611331)
chr4 (1-126)||(36864823-36864949)
chr4 (3-132)||(36865635-36865765)
chr4 (14-132)||(38694884-38695002)
chr4 (1-133)||(45235876-45236009)
chr4 (1-132)||(10424975-10425107)
chr4 (1-132)||(29651248-29651380)
chr4 (1-127)||(29650420-29650547)
chr4 (1-127)||(38143653-38143780)
chr4 (1-127)||(26610350-26610478)
chr4 (1-132)||(9939287-9939419)
chr4 (1-132)||(21165447-21165579)
chr4 (1-132)||(38694702-38694834)
chr4 (14-132)||(31836390-31836508)
chr4 (1-114)||(38143506-38143620)
chr4 (1-132)||(45230365-45230497)
chr4 (2-132)||(39522375-39522506)
chr4 (1-88)||(9939166-9939254)
chr4 (1-132)||(31835148-31835280)
chr4 (4-132)||(39523192-39523319)
chr4 (13-88)||(11806135-11806209)
chr4 (4-118)||(36451347-36451461)
chr4 (4-88)||(17648064-17648148)
chr4 (40-132)||(30808621-30808713)
chr4 (32-118)||(25970120-25970205)
chr4 (4-132)||(25970722-25970851)
chr4 (83-132)||(28683508-28683557)
chr4 (4-132)||(36450728-36450857)
chr4 (92-133)||(47376851-47376892)
[»] chr2 (14 HSPs)
chr2 (1-132)||(37547998-37548130)
chr2 (1-132)||(21471870-21472002)
chr2 (1-132)||(13134318-13134450)
chr2 (1-132)||(21471017-21471149)
chr2 (1-132)||(4479620-4479750)
chr2 (15-132)||(14573930-14574047)
chr2 (1-132)||(38834387-38834519)
chr2 (18-133)||(14573260-14573374)
chr2 (1-132)||(38834552-38834684)
chr2 (1-47)||(4478936-4478981)
chr2 (96-132)||(5276465-5276501)
chr2 (96-132)||(1164788-1164824)
chr2 (4-72)||(11256699-11256766)
chr2 (92-132)||(45139692-45139732)
[»] scaffold0041 (2 HSPs)
scaffold0041 (4-133)||(27220-27348)
scaffold0041 (43-132)||(27534-27623)
[»] scaffold0311 (1 HSPs)
scaffold0311 (1-132)||(75-208)
[»] scaffold0332 (1 HSPs)
scaffold0332 (1-132)||(9174-9306)


Alignment Details
Target: chr8 (Bit Score: 141; Significance: 7e-74; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 133 - 336
Target Start/End: Complemental strand, 6862949 - 6862746
Alignment:
Q  133 gagaagttattggttagccttcaatgatatcacagatccacaacgtcttttaatgaaatgacatgcaaagaatcatttgtgtcaaatgatatcacaaatt 232  Q
    ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6862949 gagaagttattagttagccttcaatgatatcacaaatccacaacgtcttttaatgaaatgacatgcaaagaatcatttgtgtcaaatgatatcacaaatt 6862850  T
Q  233 cacaactttaagcaattttctgaacgtaannnnnnnnnnnnncaggagggttttatttctagtgttggtagacttcaaggggtaaagcatgtggtcctct 332  Q
    ||||||||||| |||||||||||||||||              |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  6862849 cacaactttaaacaattttctgaacgtaagtttattcttttcaaggagggttttatttctagtgttggtagccttcaaggggtaaagcatttggtcctct 6862750  T
Q  333 tatc 336  Q
    ||||    
T  6862749 tatc 6862746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 5035030 - 5034898
Alignment:
Q  1 tgaaagatagtataaaaaa-taatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||| ||||||   ||| |||     
T  5035030 tgaaagatagtataaaaaaataatctagtggttgagagagtatgatatgaatatgttcctcattcaatctaatggacatgatcaactttcccatggtgga 5034931  T
Q  100 aaagaactctcctttcccaagttaaatgccacc 132  Q
    |||||||||||||||||||| ||||||| ||||    
T  5034930 aaagaactctcctttcccaaattaaatggcacc 5034898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 34992180 - 34992312
Alignment:
Q  1 tgaaagatagtataaaaaa-taatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||   ||| ||||    
T  34992180 tgaaagatagtataaaaaaataatttagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatgatcaactttcccatggtggg 34992279  T
Q  100 aaagaactctcctttcccaagttaaatgccacc 132  Q
    ||| |||||||||||||||| ||||||| ||||    
T  34992280 aaaaaactctcctttcccaaattaaatggcacc 34992312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 38023756 - 38023624
Alignment:
Q  1 tgaaagatagtataaaaaa-taatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||  ||||| ||||||||||||||||||| ||||||| |||||||  |||||||     
T  38023756 tgaaagatagtataaaaaaataatctagtggttgagagagtatgatagaaatatgttcctcatttaatctaatgaacatgatcaacttttccatgatgga 38023657  T
Q  100 aaagaactctcctttcccaagttaaatgccacc 132  Q
    |||||| ||||||||||||| ||||||| ||||    
T  38023656 aaagaattctcctttcccaaattaaatgacacc 38023624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 41859442 - 41859310
Alignment:
Q  1 tgaaagatagtataaaaaa-taatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||| ||||||||||||| ||||||||| ||||||   ||| ||||    
T  41859442 tgaaagatagtataaaaaaataatctagtggttgagagagtatgatatgaatatgttcttcatttaatctaacggacatgatcaactttcccatggtggg 41859343  T
Q  100 aaagaactctcctttcccaagttaaatgccacc 132  Q
    |||||||||||||||||||| ||||||| ||||    
T  41859342 aaagaactctcctttcccaaattaaatggcacc 41859310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 5035197 - 5035325
Alignment:
Q  4 aagatagtataaaaaataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatgggaaag 103  Q
    |||||||| ||||| ||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||  |||| ||| ||||    
T  5035197 aagatagtgtaaaacataatttagtg-ttgagagagtatgataagaatgtattcctcatttaatctaatggacatgatcaactttcctatggtggaaaag 5035295  T
Q  104 aactctcctttcccaagttaaatgccaccg 133  Q
    |||||||||||||||| ||||||| |||||    
T  5035296 aactctcctttcccaaattaaatggcaccg 5035325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 32536840 - 32536708
Alignment:
Q  1 tgaaagatagtataaaaaa-taatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||| ||||||   ||| ||||    
T  32536840 tgaaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatgttccccatttaatctaatggacatgatcaactttcccatggtggg 32536741  T
Q  100 aaagaactctcctttcccaagttaaatgccacc 132  Q
    ||||||||||| ||||| || ||||||| ||||    
T  32536740 aaagaactctcatttcctaaattaaatggcacc 32536708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 37639843 - 37639718
Alignment:
Q  1 tgaaagatagtataaaaaa-taatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||| |||||| ||||||||||||||||||| | ||||| ||||||   ||| ||||    
T  37639843 tgaaagatagtataaaaaaataatctagtggttgagagagtatcataggaatatgttcctcatttaatctaatgaatatgatcaactttcccatggtggg 37639744  T
Q  100 aaagaactctcctttcccaagttaaa 125  Q
    |||||||||||||||||||| |||||    
T  37639743 aaagaactctcctttcccaaattaaa 37639718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 2 - 127
Target Start/End: Original strand, 32537405 - 32537528
Alignment:
Q  2 gaaagatagtataaaa-aataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggga 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||   ||| | |||| |    
T  32537405 gaaagatagtataaaaaaataatctagtggttgagagagtatgataagaatatgttccttatttaatataatggacatgattaac---tttctcatggaa 32537501  T
Q  101 aagaactctcctttcccaagttaaatg 127  Q
    |||||||||| |||||||| |||||||    
T  32537502 aagaactctcatttcccaaattaaatg 32537528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 34992147 - 34992015
Alignment:
Q  1 tgaaagatagtataaaaaa-taatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||| ||||||||| |||| ||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||| |||||||  ||| |||     
T  34992147 tgaaagataatataaaaaaataatttagtggttgagagagtatgatagaaatatgttcctcatttaatctaatggacatgatcaacttttccatggtgga 34992048  T
Q  100 aaagaactctcctttcccaagttaaatgccacc 132  Q
    ||| ||||||| |||||||| ||||||| ||||    
T  34992047 aaataactctcgtttcccaaattaaatggcacc 34992015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 178 - 257
Target Start/End: Complemental strand, 6873582 - 6873504
Alignment:
Q  178 tcttttaatgaaatgacatgcaaagaatcatttgtgtcaaatgatatcacaaattcacaactttaagcaattttctgaac 257  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||    
T  6873582 tcttttaatgaaatgacatgcaaagaatcatttgtgtc-aatgatatcacaaattcacaacttcaaacaattttctgaac 6873504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 41860012 - 41860101
Alignment:
Q  1 tgaaagatagtataaaaaa-taatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaactttt 89  Q
    ||||||||||||||||||| |||| |||||||||||| |||||||||  ||||| ||||||||||||||||||||||||||| |||||||    
T  41860012 tgaaagatagtataaaaaaataatatagtggttgagaaagtatgatagaaatatgttcctcatttaatctaatggacatgatcaactttt 41860101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 275 - 336
Target Start/End: Complemental strand, 6873476 - 6873415
Alignment:
Q  275 caggagggttttatttctagtgttggtagacttcaaggggtaaagcatgtggtcctcttatc 336  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  6873476 caggagggttttatttccagtgttggtagccttcaaggggtaaagcatgtggtcctcttatc 6873415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 38024447 - 38024492
Alignment:
Q  1 tgaaagatagtataaaaaataatctagtggttgagagagtatgata 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  38024447 tgaaagatagtataaaaaataatctagtggttgagagagtatgata 38024492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 92 - 132
Target Start/End: Complemental strand, 44751648 - 44751608
Alignment:
Q  92 atgatgggaaagaactctcctttcccaagttaaatgccacc 132  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  44751648 atgatgggaaagaagtctcctttcccaagttaaatgccacc 44751608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 91 - 132
Target Start/End: Original strand, 44752577 - 44752618
Alignment:
Q  91 tatgatgggaaagaactctcctttcccaagttaaatgccacc 132  Q
    |||| |||||||||| ||||||||||||||||||||||||||    
T  44752577 tatggtgggaaagaagtctcctttcccaagttaaatgccacc 44752618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 143
Target Start/End: Complemental strand, 39254828 - 39254776
Alignment:
Q  91 tatgatgggaaagaactctcctttcccaagttaaatgccaccgagaagttatt 143  Q
    |||| |||||||||| ||||||||||||| |||||||||||| | ||||||||    
T  39254828 tatggtgggaaagaagtctcctttcccaaattaaatgccacccaaaagttatt 39254776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 44098425 - 44098469
Alignment:
Q  87 tttttatgatgggaaagaactctcctttcccaagttaaatgccacc 132  Q
    |||||||| |||||||||||||||||||||||| ||||||| ||||    
T  44098425 tttttatg-tgggaaagaactctcctttcccaaattaaatggcacc 44098469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 132
Target Start/End: Complemental strand, 61490 - 61454
Alignment:
Q  96 tgggaaagaactctcctttcccaagttaaatgccacc 132  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  61490 tgggaaagaagtctcctttcccaaattaaatgccacc 61454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 132
Target Start/End: Complemental strand, 1365865 - 1365829
Alignment:
Q  96 tgggaaagaactctcctttcccaagttaaatgccacc 132  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  1365865 tgggaaagaagtctcctttcccaaattaaatgccacc 1365829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 7818601 - 7818534
Alignment:
Q  4 aagatagtataaaaaataatctagtggttgagagagtatgataagaatatattcctcatttaatctaat 72  Q
    |||||||| | || || ||||||||| ||||||||| ||||||||||||| ||| ||| ||||||||||    
T  7818601 aagatagtgtgaagaaaaatctagtg-ttgagagagcatgataagaatatgttcttcacttaatctaat 7818534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 10806075 - 10806008
Alignment:
Q  4 aagatagtataaaaaataatctagtggttgagagagtatgataagaatatattcctcatttaatctaat 72  Q
    |||||||| | || || ||||||||| ||||||||| ||| ||||||||| ||| ||||||||||||||    
T  10806075 aagatagtgtgaagaaaaatctagtg-ttgagagagcatgttaagaatatgttcttcatttaatctaat 10806008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 38778754 - 38778821
Alignment:
Q  4 aagatagtataaaaaataatctagtggttgagagagtatgataagaatatattcctcatttaatctaat 72  Q
    |||||||| | || || ||||||||| ||||||||||||| ||| ||||||||| ||| ||||||||||    
T  38778754 aagatagtgtgaagaaaaatctagtg-ttgagagagtatgttaaaaatatattcttcacttaatctaat 38778821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 132
Target Start/End: Original strand, 39255764 - 39255800
Alignment:
Q  96 tgggaaagaactctcctttcccaagttaaatgccacc 132  Q
    |||||||||| |||| |||||||||||||||||||||    
T  39255764 tgggaaagaagtctcatttcccaagttaaatgccacc 39255800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 39852762 - 39852829
Alignment:
Q  4 aagatagtataaaaaataatctagtggttgagagagtatgataagaatatattcctcatttaatctaat 72  Q
    |||||||| | || || ||||||||| ||||||||| ||| ||||||||||||| ||| ||||||||||    
T  39852762 aagatagtgtgaagaaaaatctagtg-ttgagagagcatgttaagaatatattcttcacttaatctaat 39852829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 3e-45; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 23440781 - 23440913
Alignment:
Q  1 tgaaagatagtataaaa-aataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||   ||| ||||    
T  23440781 tgaaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatattcctcatttaatctaatggacatgatcaactttcccatggtggg 23440880  T
Q  100 aaagaactctcctttcccaagttaaatgccacc 132  Q
    |||||||||||||||||||| ||||||| ||||    
T  23440881 aaagaactctcctttcccaaattaaatggcacc 23440913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 48972361 - 48972493
Alignment:
Q  1 tgaaagatagtataaaa-aataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||| |||||||  ||| ||||    
T  48972361 tgaaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatgtttctcatttaatctaatggacatgatcaacttttccatggtggg 48972460  T
Q  100 aaagaactctcctttcccaagttaaatgccacc 132  Q
    |||||||||||||||||||| ||||||| ||||    
T  48972461 aaagaactctcctttcccaaattaaatggcacc 48972493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 193980 - 193850
Alignment:
Q  1 tgaaagatagtataaaaaataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggga 100  Q
    ||||||||| ||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| | ||| |||||    
T  193980 tgaaagataatataaaaaataatctagtg-tggagagagtatgataagaatatgttcctcatttaatttaatggacatgattaactttctcatggtggga 193882  T
Q  101 aagaactctcctttcccaagttaaatgccacc 132  Q
    ||||||||||||||||||| ||||||| ||||    
T  193881 aagaactctcctttcccaaattaaatggcacc 193850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 9948804 - 9948935
Alignment:
Q  1 tgaaagatagtataaaaaataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggga 100  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||| ||||||   ||| |||||    
T  9948804 tgaaagatagtataaaaaataatctagtggttgatagagtatgataggaatatgttcctcatttaatctaatggacatgatcaactttcccatggtggga 9948903  T
Q  101 aagaactctcctttcccaagttaaatgccacc 132  Q
    |||||||||||||||| || ||||||| ||||    
T  9948904 aagaactctcctttcctaaattaaatggcacc 9948935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 16270340 - 16270207
Alignment:
Q  1 tgaaagatagtataaaaaa--taatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatgg 98  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||   ||| |||    
T  16270340 tgaaagatagtataaaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatgatcaactttcccatggtgg 16270241  T
Q  99 gaaagaactctcctttcccaagttaaatgccacc 132  Q
    ||||||||||||||||||||| ||||||| ||||    
T  16270240 gaaagaactctcctttcccaaattaaatggcacc 16270207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 23440748 - 23440616
Alignment:
Q  1 tgaaagatagtataaaaaataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||| || |||||||  ||  | |||    
T  23440748 tgaaagatagtataaaaaataatctagtggttgagagagtatgataggaatatgtttctcatttaatctaatggacataatcaacttttccatagttgga 23440649  T
Q  101 aagaactctcctttcccaagttaaatgccaccg 133  Q
    ||||||||||||||||||| ||||||| |||||    
T  23440648 aagaactctcctttcccaaattaaatggcaccg 23440616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 43737894 - 43738026
Alignment:
Q  1 tgaaagatagtataaaa-aataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||| ||||||| ||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||| ||||||   ||||||||    
T  43737894 tgaaagataatataaaaaaataatctagtggttgagagaatatgataggaatatgttcctcatttaatctaatggacatgatcaactttcccatgatggg 43737993  T
Q  100 aaagaactctcctttcccaagttaaatgccacc 132  Q
    |||||||||||||||||||| ||||||| ||||    
T  43737994 aaagaactctcctttcccaaattaaatggcacc 43738026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 16271064 - 16271196
Alignment:
Q  1 tgaaagatagtataaaa-aataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||   |||||| |    
T  16271064 tgaaatatagtataaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatgatcaactttcccatgatgag 16271163  T
Q  100 aaagaactctcctttcccaagttaaatgccacc 132  Q
    ||||||||||||||||| || ||||||| ||||    
T  16271164 aaagaactctcctttcctaaattaaatggcacc 16271196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 43737861 - 43737729
Alignment:
Q  1 tgaaagatagtataaaaaa-taatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||   ||| ||||    
T  43737861 tgaaagatagtgtaaaaaaataatctagtggttgagagagtatgataaaaatatattcctcatttaatctaatggacatgatcaactttcccatggtggg 43737762  T
Q  100 aaagaactctcctttcccaagttaaatgccacc 132  Q
    ||| |||||| ||||||||| ||||||| ||||    
T  43737761 aaataactctactttcccaaattaaatggcacc 43737729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 9948127 - 9947995
Alignment:
Q  1 tgaaagatagtataaaaaa-taatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||| | ||||| |||||||  ||| ||||    
T  9948127 tgaaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatgaatatgatcaacttttccatggtggg 9948028  T
Q  100 aaagaactctcctttcccaagttaaatgccacc 132  Q
    |||||||| | ||||||||| ||||||| ||||    
T  9948027 aaagaacttttctttcccaaattaaatggcacc 9947995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 51974569 - 51974437
Alignment:
Q  1 tgaaagatagtataaaaaa-taatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||| |||||| ||| |||||||||||||| |||||||| ||||||   ||| ||||    
T  51974569 tgaaagatagtataaaaaaataatctagtagttgagagagtatgataggaatatgttcttcatttaatctaatagacatgatcaactttcccatggtggg 51974470  T
Q  100 aaagaactctcctttcccaagttaaatgccacc 132  Q
    |||||||||||||||||||| ||||||| ||||    
T  51974469 aaagaactctcctttcccaaattaaatggcacc 51974437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 6076784 - 6076911
Alignment:
Q  1 tgaaagatagtataaaaaataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggga 100  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||||| || |||||||||| ||||||||||||| |||||||  ||  |||||    
T  6076784 tgaaagatagtataaaaaataatctattggttgagagagtatgataggaatatgttactcatttaatataatggacatgatcaacttttccatagtggga 6076883  T
Q  101 aagaactctcctttcccaagttaaatgc 128  Q
    |||||||||| ||||||| | |||||||    
T  6076884 aagaactctcatttcccatgctaaatgc 6076911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 48971837 - 48971705
Alignment:
Q  1 tgaaagatagtataaaaaa-taatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||| |||||| ||||||||||||||||||  | ||||| |||||| | ||  ||||    
T  48971837 tgaaagatagtataaaaaaataatatagtggttgagagagtatgataggaatatgttcctcatttaatctaatttatatgatcaactttctcattgtggg 48971738  T
Q  100 aaagaactctcctttcccaagttaaatgccacc 132  Q
    |||||||||||||||||||| ||||||| ||||    
T  48971737 aaagaactctcctttcccaaattaaatgacacc 48971705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 51975143 - 51975275
Alignment:
Q  1 tgaaagatagtataaaa-aataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||| |||||| |||||||||||||||||| |||||||| ||||||   ||  ||      
T  51975143 tgaaagatagtataaaaaaataatctagtggttaagagagtatgataggaatatgttcctcatttaatctaattgacatgatcaactttcccatagtgaa 51975242  T
Q  100 aaagaactctcctttcccaagttaaatgccacc 132  Q
    |||||||||||||||||||| ||||||| ||||    
T  51975243 aaagaactctcctttcccaaattaaatggcacc 51975275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 38930444 - 38930312
Alignment:
Q  1 tgaaagatagtataaaaaa-taatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||| ||||||| ||||||| ||||| ||||||   ||| ||      
T  38930444 tgaaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatgttccttatttaatttaatggatatgatcaactttcccatggtgaa 38930345  T
Q  100 aaagaactctcctttcccaagttaaatgccacc 132  Q
    |||||||| ||||||||||| ||||||| ||||    
T  38930344 aaagaactttcctttcccaaattaaatgacacc 38930312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 50827007 - 50827138
Alignment:
Q  1 tgaaagatagtataaaaaa-taatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||| ||||||||| |||| ||||||||||||||||||||||| ||||| || |||||||||||||||||||||||| ||||||   ||| ||||    
T  50827007 tgaaagatactataaaaaaataatttagtggttgagagagtatgataaaaatatgtttctcatttaatctaatggacatgatcaactttcccatggtggg 50827106  T
Q  100 aaagaactctcctttcccaagttaaatgccacc 132  Q
    ||| |||||||||||| ||| ||||||| ||||    
T  50827107 aaa-aactctcctttctcaaattaaatggcacc 50827138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 4 - 118
Target Start/End: Complemental strand, 6076101 - 6075988
Alignment:
Q  4 aagatagtataaaaaataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatgggaaag 103  Q
    |||||||| ||||||||||| ||||| |||||||| |||||||| ||| ||||||||||||||||||||||||||||| |||||| | ||| | | ||||    
T  6076101 aagatagtgtaaaaaataatttagtg-ttgagagactatgataaaaatgtattcctcatttaatctaatggacatgatcaactttctcatggtagaaaag 6076003  T
Q  104 aactctcctttccca 118  Q
    |||||||||||||||    
T  6076002 aactctcctttccca 6075988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 4 - 108
Target Start/End: Complemental strand, 12926000 - 12925897
Alignment:
Q  4 aagatagtataaaaaataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatgggaaag 103  Q
    |||||||| |||||||||||||| || |||||||||||  |||||||| |||||| ||||||||||||||||||| || ||||||| |||| ||| |||     
T  12926000 aagatagtgtaaaaaataatctaatg-ttgagagagtagtataagaatgtattccacatttaatctaatggacattatcaacttttctatggtggaaaaa 12925902  T
Q  104 aactc 108  Q
    |||||    
T  12925901 aactc 12925897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 127
Target Start/End: Original strand, 38931177 - 38931290
Alignment:
Q  14 aaaaaataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatgggaaagaactctcctt 113  Q
    |||||||||| ||||||||||||||||||||||  ||||| || || ||||||| ||||||| ||||| ||||||   ||| | | |||||||||| |||    
T  38931177 aaaaaataatatagtggttgagagagtatgatagaaatatgtttcttatttaatttaatggatatgatcaactttcccatggtagaaaagaactcttctt 38931276  T
Q  114 tcccaagttaaatg 127  Q
    |||||| |||||||    
T  38931277 tcccaaattaaatg 38931290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 31390741 - 31390847
Alignment:
Q  1 tgaaagatagtataaaaaataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggga 100  Q
    ||||||||||| |||||||||||||| || ||||||||||| ||||| ||| | ||||||||||| || ||||||||| || ||||||   ||| |||||    
T  31390741 tgaaagatagtgtaaaaaataatctaatg-ttgagagagtaggataaaaatgtgttcctcatttattccaatggacataatcaactttcccatggtggga 31390839  T
Q  101 aagaactc 108  Q
    ||||||||    
T  31390840 aagaactc 31390847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 38 - 88
Target Start/End: Complemental strand, 27888765 - 27888715
Alignment:
Q  38 agtatgataagaatatattcctcatttaatctaatggacatgattaacttt 88  Q
    ||||||||| |||||| ||||||||||||||||||||||||||| ||||||    
T  27888765 agtatgataggaatatgttcctcatttaatctaatggacatgatcaacttt 27888715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 88
Target Start/End: Complemental strand, 47334327 - 47334243
Alignment:
Q  4 aagatagtataaaa-aataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttt 88  Q
    |||||||| ||||| |||||||||||| ||||||||||| |||||| || | || ||||||||||||||||||||| || ||||||    
T  47334327 aagatagtgtaaaacaataatctagtg-ttgagagagtaggataaggatttgtttctcatttaatctaatggacataatcaacttt 47334243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 132
Target Start/End: Original strand, 35616787 - 35616823
Alignment:
Q  96 tgggaaagaactctcctttcccaagttaaatgccacc 132  Q
    |||||||||| ||||||||||||||||||||||||||    
T  35616787 tgggaaagaagtctcctttcccaagttaaatgccacc 35616823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 194619 - 194750
Alignment:
Q  1 tgaaagatagtataaaaaataatctagtggttgagagagtatgataagaat--atattcctcatttaatctaatggacatgattaacttttttatgatgg 98  Q
    |||||||||||||||||||||||||||| || |||| |||||||||| |||  || |||||| || ||||||||||    |||| |||||   |||||||    
T  194619 tgaaagatagtataaaaaataatctagt-gtagagatagtatgataa-aatcaatgttcctc-ttgaatctaatggttgagatttactttcccatgatgg 194715  T
Q  99 gaaagaactctcctttcccaagttaaatgccaccg 133  Q
    ||||||| | | ||||||||| ||||||| |||||    
T  194716 gaaagaagtttgctttcccaaattaaatggcaccg 194750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 88
Target Start/End: Complemental strand, 20794413 - 20794333
Alignment:
Q  7 atagtataaaaaataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttt 88  Q
    ||||| |||||||||||||| || ||||||||||   |||||||| | |||| |||||||||||||| |||| || ||||||    
T  20794413 atagtgtaaaaaataatctaatg-ttgagagagtgatataagaatgtgttccacatttaatctaatgcacattatcaacttt 20794333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 133
Target Start/End: Original strand, 47334848 - 47334949
Alignment:
Q  32 tgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatgggaaagaactctcctttcccaagttaaatgccac 131  Q
    |||||||||| |||||  || | || ||||||||||| ||||||||| || ||||||  |||| ||||||| ||||| | |||||||   ||||||||||    
T  47334848 tgagagagtaggataaagatttgttactcatttaatccaatggacataatcaactttcctatggtgggaaacaactcccttttcccatactaaatgccac 47334947  T
Q  132 cg 133  Q
    ||    
T  47334948 cg 47334949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 7219135 - 7219068
Alignment:
Q  4 aagatagtataaaaaataatctagtggttgagagagtatgataagaatatattcctcatttaatctaat 72  Q
    |||||||| | || || ||||||||| |||||| || ||| ||||||||||||| ||||||||||||||    
T  7219135 aagatagtgtgaagaaaaatctagtg-ttgagaaagcatgttaagaatatattcttcatttaatctaat 7219068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 132
Target Start/End: Complemental strand, 8560879 - 8560839
Alignment:
Q  92 atgatgggaaagaactctcctttcccaagttaaatgccacc 132  Q
    |||||||||||||| ||||||||||||| ||||||| ||||    
T  8560879 atgatgggaaagaagtctcctttcccaaattaaatgtcacc 8560839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 132
Target Start/End: Complemental strand, 35615803 - 35615767
Alignment:
Q  96 tgggaaagaactctcctttcccaagttaaatgccacc 132  Q
    |||||||||| |||||||| |||||||||||||||||    
T  35615803 tgggaaagaagtctccttttccaagttaaatgccacc 35615767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 37725489 - 37725438
Alignment:
Q  21 aatctagtggttgagagagtatgataagaatatattcctcatttaatctaatg 73  Q
    ||||||||| ||||||||||||| ||||||||| ||| ||| |||||||||||    
T  37725489 aatctagtg-ttgagagagtatgttaagaatatgttcttcacttaatctaatg 37725438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 51247955 - 51247888
Alignment:
Q  4 aagatagtataaaaaataatctagtggttgagagagtatgataagaatatattcctcatttaatctaat 72  Q
    |||||||| | || || ||||||||| ||||||||| ||| ||||||||||||| ||| ||||||||||    
T  51247955 aagatagtgtgaagaaaaatctagtg-ttgagagagcatgttaagaatatattcttcacttaatctaat 51247888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 51248442 - 51248509
Alignment:
Q  4 aagatagtataaaaaataatctagtggttgagagagtatgataagaatatattcctcatttaatctaat 72  Q
    |||||||| | || || ||||||||| ||||||||||||| ||||||||| ||| ||| ||||||||||    
T  51248442 aagatagtgtgaagaaaaatctagtg-ttgagagagtatgttaagaatatgttcttcacttaatctaat 51248509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 132
Target Start/End: Complemental strand, 51987863 - 51987827
Alignment:
Q  96 tgggaaagaactctcctttcccaagttaaatgccacc 132  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  51987863 tgggaaagaagtctcctttcccaaattaaatgccacc 51987827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 32490111 - 32490238
Alignment:
Q  1 tgaaagatagtataaaa-aataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||  ||| ||||    
T  32490111 tgaaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatgatcaacttttccatggtggg 32490210  T
Q  100 aaagaactctcctttcccaagttaaatg 127  Q
    |||||||||||||||||||| |||||||    
T  32490211 aaagaactctcctttcccaaattaaatg 32490238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 4 - 127
Target Start/End: Complemental strand, 36750173 - 36750050
Alignment:
Q  4 aagatagtataaaaaataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatgggaaag 103  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||  ||| ||| ||||    
T  36750173 aagatagtgtaaaaaataatctagtggttgagagagtatgataagaatgtattcctcatttaatctaatgaacatgatcaacttttccatggtggaaaag 36750074  T
Q  104 aactctcctttcccaagttaaatg 127  Q
    |||||||||||||||| |||||||    
T  36750073 aactctcctttcccaaattaaatg 36750050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 36750354 - 36750485
Alignment:
Q  1 tgaaagatagtataaaaaataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||| ||||||| ||||||   ||| |||||    
T  36750354 tgaaagatagtataaaaaataatctagtggttgagagagtatgatagaaatatgttcctcatttaatctaatgaacatgatcaactttcccatggtggga 36750453  T
Q  101 aagaactctcctttcccaagttaaatgccacc 132  Q
    ||||||||||||||||||| ||||||| ||||    
T  36750454 aagaactctcctttcccaaattaaatggcacc 36750485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 4 - 132
Target Start/End: Original strand, 52492199 - 52492327
Alignment:
Q  4 aagatagtataaaaaataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatgggaaag 103  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||  ||| ||| ||||    
T  52492199 aagatagtgtaaaaaataatctagtggttgagagagtatgataagaatgtattcctcatttaatctaatggacatgaacaacttttccatggtggaaaag 52492298  T
Q  104 aactctcctttcccaagttaaatgccacc 132  Q
    ||||||| |||||||| ||||||| ||||    
T  52492299 aactctcatttcccaaattaaatgacacc 52492327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 45242198 - 45242071
Alignment:
Q  1 tgaaagatagtataaaaaa-taatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||   |||||||     
T  45242198 tgaaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatgatcaactttcccatgatgga 45242099  T
Q  100 aaagaactctcctttcccaagttaaatg 127  Q
    ||||||||||| |||||||| |||||||    
T  45242098 aaagaactctcatttcccaaattaaatg 45242071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 19132728 - 19132860
Alignment:
Q  1 tgaaagatagtataaaa-aataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||| ||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||   ||| ||||    
T  19132728 tgaaagataatataaaaaaataatccagtggttgagagagtatgataagaatatgttcctcatttaatctaatggacatgatcaactttcccatggtggg 19132827  T
Q  100 aaagaactctcctttcccaagttaaatgccacc 132  Q
    |||||||| ||||||||||| ||||||| ||||    
T  19132828 aaagaactttcctttcccaaattaaatggcacc 19132860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 41756348 - 41756480
Alignment:
Q  1 tgaaagatagtataaaa-aataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||| ||||||| ||||||   ||||||||    
T  41756348 tgaaagatagtataaaaaaataatctaatggttgagagagtatgataggaatatgttcctcatttaatctaatgaacatgatcaactttcccatgatggg 41756447  T
Q  100 aaagaactctcctttcccaagttaaatgccacc 132  Q
    ||||||||||||||||| || ||||||| ||||    
T  41756448 aaagaactctcctttcctaacttaaatgacacc 41756480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 19132695 - 19132563
Alignment:
Q  1 tgaaagatagtataaaaaa-taatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||   ||  | ||    
T  19132695 tgaaagataatataaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatgatcaactttcccatagtagg 19132596  T
Q  100 aaagaactctcctttcccaagttaaatgccacc 132  Q
    |||||||||||||||||||| ||||||| ||||    
T  19132595 aaagaactctcctttcccaaattaaatggcacc 19132563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 38923581 - 38923713
Alignment:
Q  1 tgaaagatagtataaaa-aataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||  ||||| ||||||||||||||||||| |||| || |||||||  ||| ||||    
T  38923581 tgaaagatagtataaaaaaataatctagtggttgagagagtatgatagaaatatgttcctcatttaatctaatgaacattatcaacttttccatggtggg 38923680  T
Q  100 aaagaactctcctttcccaagttaaatgccacc 132  Q
    ||||||||||| |||||||| ||||||| ||||    
T  38923681 aaagaactctcatttcccaaattaaatggcacc 38923713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 41755631 - 41755499
Alignment:
Q  1 tgaaagatagtataaaaaa-taatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||  ||||| ||||||||||||||||||| ||||||| || ||| | ||| ||||    
T  41755631 tgaaagatagtataaaaaaataatatagtggttgagagagtatgatagaaatatgttcctcatttaatctaatgaacatgatcaattttctcatggtggg 41755532  T
Q  100 aaagaactctcctttcccaagttaaatgccacc 132  Q
    ||| |||||||||||||||| ||||||| ||||    
T  41755531 aaaaaactctcctttcccaaattaaatgacacc 41755499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 44687079 - 44687211
Alignment:
Q  1 tgaaagatagtataaaa-aataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||| | ||||| |||||||  ||| |||     
T  44687079 tgaaagatagtataaaaaaataatctaatggttgagagagtatgataggaatattttcctcatttaatctaatgaatatgatcaacttttccatggtgga 44687178  T
Q  100 aaagaactctcctttcccaagttaaatgccacc 132  Q
    |||||| ||||||||||||| ||||||| ||||    
T  44687179 aaagaattctcctttcccaaattaaatggcacc 44687211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 3971124 - 3970997
Alignment:
Q  1 tgaaagatagtataaaaaa-taatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||  ||| ||      
T  3971124 tgaaagatagtataaaaaaataatcaagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatgatcaacttttccatggtgaa 3971025  T
Q  100 aaagaactctcctttcccaagttaaatg 127  Q
    ||| ||||||| |||||||| |||||||    
T  3971024 aaaaaactctcatttcccaaattaaatg 3970997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 38922875 - 38922748
Alignment:
Q  1 tgaaagatagtataaaaaa-taatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| |||||| || |||||||||||||||||| ||||| ||||||   ||| | ||    
T  38922875 tgaaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatgtttctcatttaatctaatggatatgatcaactttcccatggtagg 38922776  T
Q  100 aaagaactctcctttcccaagttaaatg 127  Q
    ||| |||||||||||||||| |||||||    
T  38922775 aaataactctcctttcccaaattaaatg 38922748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 3 - 127
Target Start/End: Original strand, 3998759 - 3998884
Alignment:
Q  3 aaagatagtataaaa-aataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatgggaa 101  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||  ||| ||  ||    
T  3998759 aaagatagtataaaaaaataatcaagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatgatcaacttttccatggtgaaaa 3998858  T
Q  102 agaactctcctttcccaagttaaatg 127  Q
    | ||||||| |||||||| |||||||    
T  3998859 aaaactctcatttcccaaattaaatg 3998884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 52492018 - 52491890
Alignment:
Q  1 tgaaagatagtataaaaaa-taatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||  ||||| ||||| ||||||||||||||||||||| |||||||  |     ||    
T  52492018 tgaaagatagtataaaaaaataatctagtggttgagagagtatgatagaaatatgttccttatttaatctaatggacatgatcaacttttcca-----gg 52491924  T
Q  100 aaagaactctcctttcccaagttaaatgccaccg 133  Q
    |||||||||||||||||||| ||||||| |||||    
T  52491923 aaagaactctcctttcccaaattaaatggcaccg 52491890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 3971818 - 3971950
Alignment:
Q  1 tgaaagatagtataaaa-aataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||  ||||| ||||||||||||||||||||| ||||| ||||||   || |||||    
T  3971818 tgaaagatagtataaaaaaataatctagtggttgagagagtatgatagaaatatgttcctcatttaatctaatggatatgatcaactttcccatcatggg 3971917  T
Q  100 aaagaactctcctttcccaagttaaatgccacc 132  Q
    |||||||| || ||||| || ||||||| ||||    
T  3971918 aaagaactttcatttcctaaattaaatggcacc 3971950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 3998060 - 3997928
Alignment:
Q  1 tgaaagatagtataaaaaa-taatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||  ||||| ||||||||||||||||||||| ||||| ||||||   || |||||    
T  3998060 tgaaagatagtataaaaaaataatctagtggttgagagagtatgatagaaatatgttcctcatttaatctaatggatatgatcaactttcccatcatggg 3997961  T
Q  100 aaagaactctcctttcccaagttaaatgccacc 132  Q
    |||||||| || ||||| || ||||||| ||||    
T  3997960 aaagaactttcatttcctaaattaaatggcacc 3997928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 44686386 - 44686255
Alignment:
Q  1 tgaaagatagtataaaaaa-taatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||| |||||| | ||| | |     
T  44686386 tgaaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatgtttctcatttaatctaatggacatgatcaactttctcatggt-ga 44686288  T
Q  100 aaagaactctcctttcccaagttaaatgccacc 132  Q
    ||| ||||||||||| |||| ||||||| ||||    
T  44686287 aaaaaactctccttttccaaattaaatggcacc 44686255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 45242903 - 45243035
Alignment:
Q  1 tgaaagatagtataaaa-aataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||| || ||||| ||||||   ||| |||     
T  45242903 tgaaagataatataaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatagatatgatcaactttcccatggtgga 45243002  T
Q  100 aaagaactctcctttcccaagttaaatgccacc 132  Q
    |||||||||| ||||||||| ||||||| ||||    
T  45243003 aaagaactcttctttcccaaattaaatggcacc 45243035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 32490078 - 32489946
Alignment:
Q  1 tgaaagatagtataaaaaa-taatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||||||||||||| ||||  |||||||||||||||||||||  ||||| ||||| ||||||||||||||||||||| ||||||   ||| |||     
T  32490078 tgaaagatagtataaaaaaataattcagtggttgagagagtatgatagaaatatgttccttatttaatctaatggacatgatcaactttcccatggtgga 32489979  T
Q  100 aaagaactctcctttcccaagttaaatgccacc 132  Q
    |||||| ||||||||||||| ||||||| ||||    
T  32489978 aaagaattctcctttcccaaattaaatggcacc 32489946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 45500586 - 45500517
Alignment:
Q  18 aataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttt 88  Q
    |||||||||||| |||||||||||  |||||||| | |||||||||||||||||||||||| || ||||||    
T  45500586 aataatctagtg-ttgagagagtagaataagaatgtgttcctcatttaatctaatggacataatcaacttt 45500517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 8440127 - 8440215
Alignment:
Q  1 tgaaagatagtataaaaaataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttt 90  Q
    ||||||||||| |||||||||||||| | ||||||||||||  |||| ||| | |||| ||||||||| |||| |||| || ||||||||    
T  8440127 tgaaagatagtgtaaaaaataatctaat-gttgagagagtagtataataatgtgttccacatttaatcaaatgcacattatcaacttttt 8440215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 8427343 - 8427276
Alignment:
Q  4 aagatagtataaaaaataatctagtggttgagagagtatgataagaatatattcctcatttaatctaat 72  Q
    |||||||| | || || ||||||||| ||||||||| ||||||||||||| ||| ||||||||||||||    
T  8427343 aagatagtgtgaagaaaaatctagtg-ttgagagagcatgataagaatatgttcttcatttaatctaat 8427276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 132
Target Start/End: Original strand, 17227948 - 17227996
Alignment:
Q  84 acttttttatgatgggaaagaactctcctttcccaagttaaatgccacc 132  Q
    ||||||| ||| |||||||||| ||||||||||||| ||||||||||||    
T  17227948 actttttcatggtgggaaagaagtctcctttcccaaattaaatgccacc 17227996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 132
Target Start/End: Original strand, 31556224 - 31556264
Alignment:
Q  92 atgatgggaaagaactctcctttcccaagttaaatgccacc 132  Q
    |||||||||||||||||||||||||||| ||||||| ||||    
T  31556224 atgatgggaaagaactctcctttcccaaattaaatggcacc 31556264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 134
Target Start/End: Complemental strand, 17227004 - 17226966
Alignment:
Q  96 tgggaaagaactctcctttcccaagttaaatgccaccga 134  Q
    |||||||||| ||||||||||||| ||||||||||||||    
T  17227004 tgggaaagaaatctcctttcccaaattaaatgccaccga 17226966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 47737632 - 47737699
Alignment:
Q  4 aagatagtataaaaaataatctagtggttgagagagtatgataagaatatattcctcatttaatctaat 72  Q
    |||||||| | || || ||||||||| ||||||||| ||||||||||||| ||| ||| ||||||||||    
T  47737632 aagatagtgtgaagaaaaatctagtg-ttgagagagcatgataagaatatgttcttcacttaatctaat 47737699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 7e-43; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 38072030 - 38071898
Alignment:
Q  1 tgaaagatagtataaaaaa-taatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||   ||||||||    
T  38072030 tgaaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatgatcaactttcccatgatggg 38071931  T
Q  100 aaagaactctcctttcccaagttaaatgccacc 132  Q
    ||||||||||||||||| || ||||||| ||||    
T  38071930 aaagaactctcctttcctaaattaaatggcacc 38071898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 17145755 - 17145621
Alignment:
Q  1 tgaaagatagtataaaaaa--taatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatgg 98  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||   ||| |||    
T  17145755 tgaaagatagtataaaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatgatcaactttcccatggtgg 17145656  T
Q  99 gaaagaactctcctttcccaagttaaatgccaccg 133  Q
    ||||||||||||||||||||| ||||||| |||||    
T  17145655 gaaagaactctcctttcccaaattaaatggcaccg 17145621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 3 - 127
Target Start/End: Complemental strand, 7677547 - 7677422
Alignment:
Q  3 aaagatagtataaaaaa-taatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatgggaa 101  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||| |||||||| ||| ||||||    
T  7677547 aaagatagtataaaaaaataatttagtggttgagagagtatgatagaaatatgttcctcatttaatctaatggacatgatcaactttttcatggtgggaa 7677448  T
Q  102 agaactctcctttcccaagttaaatg 127  Q
    |||| ||||||||||||| |||||||    
T  7677447 agaattctcctttcccaaattaaatg 7677422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 668311 - 668179
Alignment:
Q  1 tgaaagatagtataaaaaa-taatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||| |||||| ||| ||||||||||||||||||||||| ||||||   ||| ||||    
T  668311 tgaaagatagtataaaaaaataatctggtggttgagagagtatgataggaatatgttcttcatttaatctaatggacatgatcaactttcccatggtggg 668212  T
Q  100 aaagaactctcctttcccaagttaaatgccacc 132  Q
    |||||||||||||||||||| ||||||| ||||    
T  668211 aaagaactctcctttcccaaattaaatggcacc 668179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 4 - 132
Target Start/End: Original strand, 38072211 - 38072339
Alignment:
Q  4 aagatagtataaaaaataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatgggaaag 103  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||   ||| ||| ||||    
T  38072211 aagatagtgtaaaaaataatctagtggttgagagagtatgataagaatgtattcatcatttaatctaatggacatgatcaactttcccatggtggaaaag 38072310  T
Q  104 aactctcctttcccaagttaaatgccacc 132  Q
    ||||||| |||||||| ||||||| ||||    
T  38072311 aactctcatttcccaaattaaatggcacc 38072339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 4 - 127
Target Start/End: Complemental strand, 4261333 - 4261210
Alignment:
Q  4 aagatagtataaaaaataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatgggaaag 103  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||   ||| | | ||||    
T  4261333 aagatagtgtaaaaaataatctagtggttgagagagtatgataagaatgtattcctcatttaatctaatggacatgatcaactttcccatggtagaaaag 4261234  T
Q  104 aactctcctttcccaagttaaatg 127  Q
    ||||||||||||| || |||||||    
T  4261233 aactctcctttcctaaattaaatg 4261210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 669019 - 669152
Alignment:
Q  1 tgaaagatagtataaaa-aataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||| ||||| ||||||  |||| ||||    
T  669019 tgaaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttgatctaatggatatgatcaactttcctatggtggg 669118  T
Q  100 aaagaactctcctttcccaagttaaatgccaccg 133  Q
    ||| ||||||| |||||||| ||||||| |||||    
T  669119 aaaaaactctcatttcccaaattaaatggcaccg 669152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 37864223 - 37864355
Alignment:
Q  1 tgaaagatagtataaaa-aataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||| ||||||   ||| ||||    
T  37864223 tgaaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatgtttctcatttaatctaatggacatgatcaactttcccatggtggg 37864322  T
Q  100 aaagaactctcctttcccaagttaaatgccacc 132  Q
    ||||||||||  |||||||| ||||||| ||||    
T  37864323 aaagaactcttatttcccaaattaaatggcacc 37864355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 132
Target Start/End: Original strand, 38779498 - 38779611
Alignment:
Q  18 aataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatgggaaagaactctcctttccc 117  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||   ||| ||||||||||||||||||||||    
T  38779498 aataatctagtg-ttgagagagtattataagaatatattcctcatttaatctaatggacatgatcaactttcccatggtgggaaagaactctcctttccc 38779596  T
Q  118 aagttaaatgccacc 132  Q
    || ||||||| ||||    
T  38779597 aaattaaatggcacc 38779611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 15 - 132
Target Start/End: Complemental strand, 38778971 - 38778854
Alignment:
Q  15 aaaaataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatgggaaagaactctccttt 114  Q
    |||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||| ||||| ||||||   ||| |||||||||||||||||||    
T  38778971 aaaaataatctagtggttgagagagtatgataggaatatgctcctcatttaatctaatggatatgatcaactttcccatggtgggaaagaactctccttt 38778872  T
Q  115 cccaagttaaatgccacc 132  Q
    ||||| ||||||| ||||    
T  38778871 cccaaattaaatggcacc 38778854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 4261512 - 4261644
Alignment:
Q  1 tgaaagatagtataaaa-aataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||  ||||| ||||||||||||||||||||| ||||| ||||||   ||| ||||    
T  4261512 tgaaagatagtataaaaaaataatctaatggttgagagagtatgatagaaatatgttcctcatttaatctaatggagatgatcaactttcccatggtggg 4261611  T
Q  100 aaagaactctcctttcccaagttaaatgccacc 132  Q
    ||||||||||||||||| || ||||||| ||||    
T  4261612 aaagaactctcctttcctaaattaaatggcacc 4261644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 41194642 - 41194513
Alignment:
Q  1 tgaaagatagtataaaaaataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggga 100  Q
    ||||||||| ||||||||||||| ||||| | || |||||||||||||||||| ||||||||| ||| ||||||||||||||||||||   ||| |||||    
T  41194642 tgaaagataatataaaaaataatttagtg-tggaaagagtatgataagaatatgttcctcatt-aatttaatggacatgattaactttcccatggtggga 41194545  T
Q  101 aagaactctcctttcccaagttaaatgccacc 132  Q
    ||||||||||||||||||| ||||||| ||||    
T  41194544 aagaactctcctttcccaaattaaatggcacc 41194513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 4 - 127
Target Start/End: Original strand, 7677730 - 7677852
Alignment:
Q  4 aagatagtataaaaaataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatgggaaag 103  Q
    |||||| | ||||||||||| ||||| |||||||| |||||||||||| | ||||||||||||||||||| ||||||| ||||||   ||| ||||||||    
T  7677730 aagatattgtaaaaaataatttagtg-ttgagagaatatgataagaatgtgttcctcatttaatctaatgaacatgatcaactttcccatggtgggaaag 7677828  T
Q  104 aactctcctttcccaagttaaatg 127  Q
    |||||||||||||||| |||||||    
T  7677829 aactctcctttcccaaattaaatg 7677852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 17145788 - 17145920
Alignment:
Q  1 tgaaagatagtataaaa-aataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||| |||||| ||  ||||||||||||||||||||||| ||||||   ||  |       
T  17145788 tgaaagataatataaaaaaataatctagtggttgagagagtatgataggaatatgttattcatttaatctaatggacatgatcaactttcccatagtaaa 17145887  T
Q  100 aaagaactctcctttcccaagttaaatgccacc 132  Q
    |||||||||||||||||||| ||||||| ||||    
T  17145888 aaagaactctcctttcccaaattaaatggcacc 17145920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 53 - 133
Target Start/End: Original strand, 37468974 - 37469054
Alignment:
Q  53 tattcctcatttaatctaatggacatgattaacttttttatgatgggaaagaactctcctttcccaagttaaatgccaccg 133  Q
    ||||||||||||||||||||||||||||| ||||||   ||| |||||||||||||||||||||||| ||||||| |||||    
T  37468974 tattcctcatttaatctaatggacatgatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcaccg 37469054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 41195284 - 41195415
Alignment:
Q  1 tgaaagatagtataaaaaataatctagtggttgagagagtatgataagaat--atattcctcatttaatctaatggacatgattaacttttttatgatgg 98  Q
    |||||||||||||||||||||||||||| || ||||||||||||||| |||  || |||||| || ||||||||||    |||| ||||||  |||||||    
T  41195284 tgaaagatagtataaaaaataatctagt-gtggagagagtatgataa-aatcaatgttcctc-ttgaatctaatggttgagatttacttttccatgatgg 41195380  T
Q  99 gaaagaactctcctttcccaagttaaatgccaccg 133  Q
    ||||||| | | ||||||||| ||||||| |||||    
T  41195381 gaaagaagtttgctttcccaaattaaatggcaccg 41195415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 32859360 - 32859292
Alignment:
Q  4 aagatagtataaaaaataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatg 73  Q
    |||||||| ||||||||||| || || |||||||||||  |||||||| | |||| ||||||||||||||    
T  32859360 aagatagtgtaaaaaataatttaatg-ttgagagagtagtataagaatgtgttccacatttaatctaatg 32859292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 132
Target Start/End: Complemental strand, 37468967 - 37468910
Alignment:
Q  75 acatgattaacttttttatgatgggaaagaactctcctttcccaagttaaatgccacc 132  Q
    ||||||| ||||||   ||| |||||||||||||||||||||||| ||||||| ||||    
T  37468967 acatgatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 37468910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 27855692 - 27855625
Alignment:
Q  4 aagatagtataaaaaataatctagtggttgagagagtatgataagaatatattcctcatttaatctaat 72  Q
    |||||||| | || || ||||||||| ||||||||| ||||||||||||| ||| ||| ||||||||||    
T  27855692 aagatagtgtgaagaaaaatctagtg-ttgagagagcatgataagaatatgttcttcacttaatctaat 27855625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 7e-43; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 33018299 - 33018167
Alignment:
Q  1 tgaaagatagtataaaaaa-taatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||   ||||||||    
T  33018299 tgaaagatagtataaaaaaataatctaatggttgagagagtatgataaaaatatgttcctcatttaatctaatggacatgatcaactttccaatgatggg 33018200  T
Q  100 aaagaactctcctttcccaagttaaatgccacc 132  Q
    |||||||||||||||||||| ||||||| ||||    
T  33018199 aaagaactctcctttcccaaattaaatggcacc 33018167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 33480544 - 33480676
Alignment:
Q  1 tgaaagatagtataaaa-aataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||   ||| ||||    
T  33480544 tgaaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatgatcaactttcccatggtggg 33480643  T
Q  100 aaagaactctcctttcccaagttaaatgccacc 132  Q
    |||||||||||||||||||| ||||||| ||||    
T  33480644 aaagaactctcctttcccaaattaaatggcacc 33480676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 15083234 - 15083366
Alignment:
Q  1 tgaaagatagtataaaa-aataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||| || ||||| |||||| | ||| ||||    
T  15083234 tgaaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatagatatgatcaactttctcatggtggg 15083333  T
Q  100 aaagaactctcctttcccaagttaaatgccacc 132  Q
    |||||||||||||||||||| ||||||| ||||    
T  15083334 aaagaactctcctttcccaaattaaatggcacc 15083366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 15082529 - 15082402
Alignment:
Q  1 tgaaagatagtataaaaaa-taatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||   |||||||     
T  15082529 tgaaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatgatcaactttcccatgatgga 15082430  T
Q  100 aaagaactctcctttcccaagttaaatg 127  Q
    ||||||||||| |||||||| |||||||    
T  15082429 aaagaactctcatttcccaaattaaatg 15082402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 33018332 - 33018457
Alignment:
Q  1 tgaaagatagtataaaa-aataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||| ||||||   ||| ||||    
T  33018332 tgaaagatagtataaaaaaataatctagtggttgagagagtatgatagaaatatgttcctcatttaatctaatggacatgatcaactttcccatggtggg 33018431  T
Q  100 aaagaactctcctttcccaagttaaa 125  Q
    |||||||||||||||||||| |||||    
T  33018432 aaagaactctcctttcccaaattaaa 33018457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 3542979 - 3543111
Alignment:
Q  1 tgaaagatagtataaaa-aataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||   ||| ||||    
T  3542979 tgaaagataatataaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatgatcaactttcccatggtggg 3543078  T
Q  100 aaagaactctcctttcccaagttaaatgccacc 132  Q
    ||| |||||||||||||||| ||||||| ||||    
T  3543079 aaaaaactctcctttcccaaattaaatggcacc 3543111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 33479829 - 33479701
Alignment:
Q  1 tgaaagatagtataaaaaa--taatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatgg 98  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||| ||||||   ||| |||    
T  33479829 tgaaagatagtataaaaaaaataatctagtggttgagagagtatgatagaaatatgttcctcatttaatctaatggacatgatcaactttcccatggtgg 33479730  T
Q  99 gaaagaactctcctttcccaagttaaatg 127  Q
    |||| |||||||||||||||| |||||||    
T  33479729 gaaataactctcctttcccaaattaaatg 33479701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 22580067 - 22579935
Alignment:
Q  1 tgaaagatagtataaaaaa-taatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||| |||||| ||||||||||||||||||||| ||||| ||||||   ||| |||     
T  22580067 tgaaagatagtataaaaaaataatctagtgattgagagagtatgataggaatatgttcctcatttaatctaatggatatgatcaactttcccatggtgga 22579968  T
Q  100 aaagaactctcctttcccaagttaaatgccacc 132  Q
    |||||||||||||||||||| ||||||| ||||    
T  22579967 aaagaactctcctttcccaaattaaatggcacc 22579935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 3542946 - 3542819
Alignment:
Q  1 tgaaagatagtataaaaaa-taatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||| ||||||   ||| ||||    
T  3542946 tgaaagatagtttaaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatgaacatgatcaactttcccatggtggg 3542847  T
Q  100 aaagaactctcctttcccaagttaaatg 127  Q
    ||| |||||||||||||||| |||||||    
T  3542846 aaaaaactctcctttcccaaattaaatg 3542819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 7193467 - 7193338
Alignment:
Q  1 tgaaagatagtataaaaaa-taatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||||||||||||| ||||||   ||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||   ||| ||||    
T  7193467 tgaaagatagtataaaaaaataatct---ggttgagagagtatgataagaatatgttcctcatttaatctaatggagatgatcaactttcccatggtggg 7193371  T
Q  100 aaagaactctcctttcccaagttaaatgccacc 132  Q
    |||||||||||||||||||| ||||||| ||||    
T  7193370 aaagaactctcctttcccaaattaaatggcacc 7193338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 7193494 - 7193626
Alignment:
Q  1 tgaaagatagtataaaa-aataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||||| ||||||   |||||||     
T  7193494 tgaaagataatataaaaaaataatctagtggttgagagagtatgatagaaatatattcctcatttaatctaatggatatgatcaactttcccatgatgga 7193593  T
Q  100 aaagaactctcctttcccaagttaaatgccacc 132  Q
    |||||||||| ||||| ||| ||||||| ||||    
T  7193594 aaagaactctactttctcaaattaaatggcacc 7193626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 22587226 - 22587353
Alignment:
Q  1 tgaaagatagtataaaa-aataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||||||||||| |||||||||||| ||||| |||||| |||  ||||| ||||||||||||||||||||||||||| ||||||   ||| ||||    
T  22587226 tgaaagatagtataaaaaaataatctagtgattgagtgagtataatagaaatatgttcctcatttaatctaatggacatgatcaactttcccatggtggg 22587325  T
Q  100 aaagaactctcctttcccaagttaaatg 127  Q
    |||||||||||||||||||| |||||||    
T  22587326 aaagaactctcctttcccaaattaaatg 22587353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 127
Target Start/End: Original strand, 22582420 - 22582522
Alignment:
Q  25 tagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatgggaaagaactctcctttcccaagttaa 124  Q
    ||||| ||||| |||||| |||  ||||| ||||||||||||||||||||||||||| ||||||   ||| |||||||||||||||||||||||| ||||    
T  22582420 tagtgattgagtgagtataatagaaatatgttcctcatttaatctaatggacatgatcaactttcccatggtgggaaagaactctcctttcccaaattaa 22582519  T
Q  125 atg 127  Q
    |||    
T  22582520 atg 22582522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 91 - 135
Target Start/End: Original strand, 9574578 - 9574622
Alignment:
Q  91 tatgatgggaaagaactctcctttcccaagttaaatgccaccgag 135  Q
    |||| |||||||||| |||||||||||||||||||||||||||||    
T  9574578 tatggtgggaaagaagtctcctttcccaagttaaatgccaccgag 9574622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 132
Target Start/End: Original strand, 24126726 - 24126766
Alignment:
Q  92 atgatgggaaagaactctcctttcccaagttaaatgccacc 132  Q
    ||||||||||| ||||| |||||||||| ||||||||||||    
T  24126726 atgatgggaaacaactcccctttcccaaattaaatgccacc 24126766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 7e-43; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 8040327 - 8040195
Alignment:
Q  1 tgaaagatagtataaaaaa-taatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||   | ||||||    
T  8040327 tgaaagatagtataaaaaaataatgtagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgatcaactttcccacgatggg 8040228  T
Q  100 aaagaactctcctttcccaagttaaatgccacc 132  Q
    |||||||| ||||||||||| ||||||| ||||    
T  8040227 aaagaactgtcctttcccaaattaaatggcacc 8040195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 33002732 - 33002864
Alignment:
Q  1 tgaaagatagtataaaa-aataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||   ||| ||||    
T  33002732 tgaaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatgatcaactttcccatggtggg 33002831  T
Q  100 aaagaactctcctttcccaagttaaatgccacc 132  Q
    |||||||||||||||||||| ||||||| ||||    
T  33002832 aaagaactctcctttcccaaattaaatgacacc 33002864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 15183933 - 15184066
Alignment:
Q  1 tgaaagatagtataaaa-aataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||   ||| ||||    
T  15183933 tgaaagatagcataaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatgatcaactttcccatggtggg 15184032  T
Q  100 aaagaactctcctttcccaagttaaatgccaccg 133  Q
    |||||||||||||||||||| ||||||| |||||    
T  15184033 aaagaactctcctttcccaaattaaatggcaccg 15184066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 8204252 - 8204120
Alignment:
Q  1 tgaaagatagtataaaaaa-taatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||| ||||||   ||| ||||    
T  8204252 tgaaagatagtataaaaaaataatctagtggttgagatagtatgataggaatatgttcctcatttaatctaatggacatgatcaactttcccatggtggg 8204153  T
Q  100 aaagaactctcctttcccaagttaaatgccacc 132  Q
    |||||||||||||||||||| ||||||| ||||    
T  8204152 aaagaactctcctttcccaaattaaatggcacc 8204120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 15183221 - 15183088
Alignment:
Q  1 tgaaagatagtataaaaaa-taatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||| |||||| | ||||||||    
T  15183221 tgaaagatagtataaaaaaataatctagtggttgagagagtatgatagaaatatgttcctcatttaatctaatggacatgatcaactttctcatgatggg 15183122  T
Q  100 aaa-gaactctcctttcccaagttaaatgccacc 132  Q
    |||  |||||||||||||||| ||||||| ||||    
T  15183121 aaataaactctcctttcccaaattaaatggcacc 15183088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 686548 - 686417
Alignment:
Q  1 tgaaagatagtataaaaaa-taatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||   ||| ||||    
T  686548 tgaaagatagtataaaaaaataatctagtggttgagagaatatgataggaatatattcctcatttaatctaatggacatgatcaactttcccatggtggg 686449  T
Q  100 aaagaactctcctttcccaagttaaatgccacc 132  Q
    ||| |||||||||||||||| ||||||| ||||    
T  686448 aaa-aactctcctttcccaaattaaatggcacc 686417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 4 - 127
Target Start/End: Complemental strand, 33002059 - 33001937
Alignment:
Q  4 aagatagtataaaaaataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatgggaaag 103  Q
    |||||||| ||||||||||| ||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||  ||| ||||||||    
T  33002059 aagatagtgtaaaaaataatttagtg-ttgagagaatatgataagaatgtattcctcatttaatctaatggacatgatcaacttttccatggtgggaaag 33001961  T
Q  104 aactctcctttcccaagttaaatg 127  Q
    |||||||||||||||| |||||||    
T  33001960 aactctcctttcccaaattaaatg 33001937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 36626546 - 36626678
Alignment:
Q  1 tgaaagatagtataaaaa-ataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||| ||||||   ||| ||||    
T  36626546 tgaaagataatataaaaatataatctagtggttgagagagtatgataagaatatattccttatttaatataacggacatgatcaactttcccatggtggg 36626645  T
Q  100 aaagaactctcctttcccaagttaaatgccacc 132  Q
    ||||||||||| |||||||| ||||||| ||||    
T  36626646 aaagaactctcatttcccaaattaaatggcacc 36626678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 687264 - 687391
Alignment:
Q  1 tgaaagatagtataaaaaa-taatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||||||||||||| |||| ||||| |||||||||||||||| |||||| |||||||||||||||||||||||| || |||||||  ||  |||     
T  687264 tgaaagatagtataaaaaaataatttagtgattgagagagtatgataggaatatgttcctcatttaatctaatggacataatcaacttttccatagtgga 687363  T
Q  100 aaagaactctcctttcccaagttaaatg 127  Q
    |||||||||||||||||||| |||||||    
T  687364 aaagaactctcctttcccaaattaaatg 687391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 12190075 - 12190206
Alignment:
Q  1 tgaaagatagtataaaaaataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggga 100  Q
    ||||||||| |||||||||||||||| || ||||||||||||||||  ||||| ||||||||||||||||||||||||||| ||||||   ||| |||||    
T  12190075 tgaaagataatataaaaaataatctaatgattgagagagtatgatagaaatatgttcctcatttaatctaatggacatgatcaactttcccatggtggga 12190174  T
Q  101 aagaactctcctttcccaagttaaatgccacc 132  Q
    || ||||||| |||||||| ||||||| ||||    
T  12190175 aaaaactctcttttcccaaattaaatggcacc 12190206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 8040360 - 8040492
Alignment:
Q  1 tgaaagatagtataaaa-aataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||||  ||||| ||||  ||||||||||||||||||||||||||||   | | ||||    
T  8040360 tgaaagataatataaaaaaataatctagtggttgagagagtatgatagaaatatgttccctatttaatctaatggacatgattaactttcccacggtggg 8040459  T
Q  100 aaagaactctcctttcccaagttaaatgccacc 132  Q
    |||||| | ||||||||||| ||||||| ||||    
T  8040460 aaagaaatttcctttcccaaattaaatggcacc 8040492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 42518883 - 42518809
Alignment:
Q  1 tgaaagatagtataaaa-aataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatgga 75  Q
    ||||| ||||||||||| |||||| ||||| |||||| |||| ||||||||| | || ||||||||||||||||||    
T  42518883 tgaaaaatagtataaaacaataatttagtg-ttgagatagtacgataagaatttgtttctcatttaatctaatgga 42518809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 102
Target Start/End: Complemental strand, 33685836 - 33685775
Alignment:
Q  41 atgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatgggaaa 102  Q
    ||||||| | ||||||| |||||||||||||||||||| || |||||||  ||| |||||||    
T  33685836 atgataatactatattcttcatttaatctaatggacataatcaacttttacatggtgggaaa 33685775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 132
Target Start/End: Original strand, 39950443 - 39950480
Alignment:
Q  95 atgggaaagaactctcctttcccaagttaaatgccacc 132  Q
    ||||||||||||||||||||||||| ||||||| ||||    
T  39950443 atgggaaagaactctcctttcccaaattaaatggcacc 39950480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 128
Target Start/End: Original strand, 39167448 - 39167484
Alignment:
Q  92 atgatgggaaagaactctcctttcccaagttaaatgc 128  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  39167448 atgatgggaaagaagtctcctttcccaaattaaatgc 39167484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 132
Target Start/End: Complemental strand, 39950440 - 39950404
Alignment:
Q  96 tgggaaagaactctcctttcccaagttaaatgccacc 132  Q
    |||||||||||||||||||||||| ||||||| ||||    
T  39950440 tgggaaagaactctcctttcccaaattaaatggcacc 39950404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 7e-43; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 10424255 - 10424123
Alignment:
Q  1 tgaaagatagtataaaaaa-taatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||| ||||||  |||| ||||    
T  10424255 tgaaagatagtataaaaaaataatctagtggttgagagagtatgatagaaatatgttcctcatttaatctaatggacatgatcaactttcctatggtggg 10424156  T
Q  100 aaagaactctcctttcccaagttaaatgccacc 132  Q
    |||||||||||||||||||| ||||||| ||||    
T  10424155 aaagaactctcctttcccaaattaaatggcacc 10424123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 11417819 - 11417687
Alignment:
Q  1 tgaaagatagtataaaaa-ataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||   ||| ||||    
T  11417819 tgaaagatagtataaaaatataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatgatcaactttcccatggtggg 11417720  T
Q  100 aaagaactctcctttcccaagttaaatgccacc 132  Q
    |||||||||||||||||||| ||||||| ||||    
T  11417719 aaagaactctcctttcccaaattaaatggcacc 11417687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 21166291 - 21166423
Alignment:
Q  1 tgaaagatagtataaaa-aataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||   ||||||||    
T  21166291 tgaaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatgatcaactttcccatgatggg 21166390  T
Q  100 aaagaactctcctttcccaagttaaatgccacc 132  Q
    |||||||||||||||| ||| ||||||| ||||    
T  21166391 aaagaactctcctttctcaaattaaatggcacc 21166423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 14 - 134
Target Start/End: Original strand, 11417867 - 11417987
Alignment:
Q  14 aaaaaataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatgggaaagaactctcctt 113  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||   ||| ||||||||||||||||||    
T  11417867 aaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatgatcaactttcccatggtgggaaagaactctcctt 11417966  T
Q  114 tcccaagttaaatgccaccga 134  Q
    |||||| ||||||| ||||||    
T  11417967 tcccaaattaaatgacaccga 11417987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 3 - 132
Target Start/End: Original strand, 26611201 - 26611331
Alignment:
Q  3 aaagatagtataaaa-aataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatgggaa 101  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||   ||| ||||||    
T  26611201 aaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatgatcaactttcccatggtgggaa 26611300  T
Q  102 agaactctcctttcccaagttaaatgccacc 132  Q
    | |||||||||||||||| ||||||| ||||    
T  26611301 aaaactctcctttcccaaattaaatgacacc 26611331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 36864949 - 36864823
Alignment:
Q  1 tgaaagatagtataaaaaa-taatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||| |||||| | ||| || |    
T  36864949 tgaaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatgtttctcatttaatctaatggacatgatcaactttctcatggtgag 36864850  T
Q  100 aaagaactctcctttcccaagttaaat 126  Q
    |||||||||||||||||||| ||||||    
T  36864849 aaagaactctcctttcccaaattaaat 36864823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 3 - 132
Target Start/End: Original strand, 36865635 - 36865765
Alignment:
Q  3 aaagatagtataaaa-aataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatgggaa 101  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||| ||||||   ||| ||||||    
T  36865635 aaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggatatgatcaactttcccatggtgggaa 36865734  T
Q  102 agaactctcctttcccaagttaaatgccacc 132  Q
    |||||||||||||||||| ||||||| ||||    
T  36865735 agaactctcctttcccaaattaaatgtcacc 36865765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 14 - 132
Target Start/End: Original strand, 38694884 - 38695002
Alignment:
Q  14 aaaaaataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatgggaaagaactctcctt 113  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||| |||||| | ||| ||||||||||||||||||    
T  38694884 aaaaaataatctagtggttgagagagtatgatatgaatattttcctcatttaatctaatagacatgatcaactttctcatggtgggaaagaactctcctt 38694983  T
Q  114 tcccaagttaaatgccacc 132  Q
    |||||| ||||||| ||||    
T  38694984 tcccaaattaaatggcacc 38695002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 45235876 - 45236009
Alignment:
Q  1 tgaaagatagtataaaa-aataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||  ||||| ||||||||||||||||||||||||||||||||||   ||| ||||    
T  45235876 tgaaagatagtataaaaaaataatctagtggttgagagaatatgatagaaatatgttcctcatttaatctaatggacatgattaactttcccatggtggg 45235975  T
Q  100 aaagaactctcctttcccaagttaaatgccaccg 133  Q
    ||||||||||||||| |||| ||||||| |||||    
T  45235976 aaagaactctccttttccaaattaaatggcaccg 45236009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 10424975 - 10425107
Alignment:
Q  1 tgaaagatagtataaaa-aataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||   ||| ||||    
T  10424975 tgaaagataatataaaaaaataatctagtggttgagagagtatgataggaatatattcctcatttaatctaatggatatgatcaactttcccatggtggg 10425074  T
Q  100 aaagaactctcctttcccaagttaaatgccacc 132  Q
    ||||||||||||||||| || ||||||| ||||    
T  10425075 aaagaactctcctttcctaaattaaatggcacc 10425107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 29651248 - 29651380
Alignment:
Q  1 tgaaagatagtataaaa-aataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||| || ||||| ||||||   ||| ||||    
T  29651248 tgaaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatagatatgatcaactttcccatggtggg 29651347  T
Q  100 aaagaactctcctttcccaagttaaatgccacc 132  Q
    |||||||||||||||||||| ||||||| ||||    
T  29651348 aaagaactctcctttcccaaattaaatggcacc 29651380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 29650547 - 29650420
Alignment:
Q  1 tgaaagatagtataaaaaa-taatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||   | |||||     
T  29650547 tgaaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatgatcaactttcccaagatgga 29650448  T
Q  100 aaagaactctcctttcccaagttaaatg 127  Q
    ||||||||||| |||||||| |||||||    
T  29650447 aaagaactctcatttcccaaattaaatg 29650420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 38143653 - 38143780
Alignment:
Q  1 tgaaagatagtataaaa-aataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||  ||||||   ||| ||||    
T  38143653 tgaaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatgaccaactttcccatggtggg 38143752  T
Q  100 aaagaactctcctttcccaagttaaatg 127  Q
    ||||||||||| |||||||| |||||||    
T  38143753 aaagaactctcatttcccaaattaaatg 38143780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 26610478 - 26610350
Alignment:
Q  1 tgaaagatagtataaaaaa--taatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatgg 98  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| || |||   ||| |||    
T  26610478 tgaaagatagtataaaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatgatcaattttcccatggtgg 26610379  T
Q  99 gaaagaactctcctttcccaagttaaatg 127  Q
    |||||||||||| |||||||| |||||||    
T  26610378 gaaagaactctcatttcccaaattaaatg 26610350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 9939287 - 9939419
Alignment:
Q  1 tgaaagatagtataaaaaa-taatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||| ||||||||| |||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||  ||| ||||    
T  9939287 tgaaagataatataaaaaaataatatagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatgatcaacttttccatggtggg 9939386  T
Q  100 aaagaactctcctttcccaagttaaatgccacc 132  Q
    ||||||||| |||||| ||| ||||||| ||||    
T  9939387 aaagaactcccctttctcaaattaaatggcacc 9939419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 21165579 - 21165447
Alignment:
Q  1 tgaaagatagtataaaaaat-aatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||  ||||| |||||||||||||| |||||||||||| |||||| | ||| ||||    
T  21165579 tgaaagatagtataaaaaattaatctagtggttgagagagtatgatagaaatatgttcctcatttaatcaaatggacatgatcaactttctcatggtggg 21165480  T
Q  100 aaagaactctcctttcccaagttaaatgccacc 132  Q
    |||||||| | ||||||||| ||||||| ||||    
T  21165479 aaagaactattctttcccaaattaaatggcacc 21165447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 38694834 - 38694702
Alignment:
Q  1 tgaaagatagtataaaaaa-taatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||| | ||||| |||||||  ||| ||||    
T  38694834 tgaaagataatataaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatgaatatgatcaacttttccatgctggg 38694735  T
Q  100 aaagaactctcctttcccaagttaaatgccacc 132  Q
    ||||||||||||||| |||| ||||||| ||||    
T  38694734 aaagaactctccttttccaaattaaatggcacc 38694702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 14 - 132
Target Start/End: Original strand, 31836390 - 31836508
Alignment:
Q  14 aaaaaataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatgggaaagaactctcctt 113  Q
    |||||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||| ||||||   ||| ||||||||||||||||||    
T  31836390 aaaaaataatctagtggttgagagagtatgatagaaatatgttcctcatttaatctaatggacatgatcaactttcccatggtgggaaagaactctcctt 31836489  T
Q  114 tcccaagttaaatgccacc 132  Q
    || ||| ||||||| ||||    
T  31836490 tctcaaattaaatggcacc 31836508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 38143620 - 38143506
Alignment:
Q  1 tgaaagatagtataaaaaa-taatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||  |||| |||     
T  38143620 tgaaagataatataaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatgatcaactttcctatggtgga 38143521  T
Q  100 aaagaactctccttt 114  Q
    |||||||||||||||    
T  38143520 aaagaactctccttt 38143506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 45230497 - 45230365
Alignment:
Q  1 tgaaagatagtataaaaaa-taatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||| | ||||| ||||||   ||| ||||    
T  45230497 tgaaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatgaatatgatcaactttcccatggtggg 45230398  T
Q  100 aaagaactctcctttcccaagttaaatgccacc 132  Q
    ||||||||||| |||||| | ||||||| ||||    
T  45230397 aaagaactctcttttcccgaattaaatggcacc 45230365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 2 - 132
Target Start/End: Complemental strand, 39522506 - 39522375
Alignment:
Q  2 gaaagatagtataaaaaa-taatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggga 100  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||| ||||||   ||| ||  |    
T  39522506 gaaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggatatgatcaactttcccatggtgaaa 39522407  T
Q  101 aagaactctcctttcccaagttaaatgccacc 132  Q
    ||||||| ||||||||||| ||||||| ||||    
T  39522406 aagaactatcctttcccaaattaaatgacacc 39522375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 9939254 - 9939166
Alignment:
Q  1 tgaaagatagtataaaaaa-taatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttt 88  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||    
T  9939254 tgaaagatagtataaaaaaataatctagtggttgagagagtatgataagaatatgtttctcatttaatctaatggacatgatcaacttt 9939166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 31835280 - 31835148
Alignment:
Q  1 tgaaagatagtataaaaa-ataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||| || ||||||  |||| ||||    
T  31835280 tgaaagatagtataaaaagataatctagtggttgagagagtatgataggaatatgttcctcgtttaatctaatggacataatcaactttcctatggtggg 31835181  T
Q  100 aaagaactctcctttcccaagttaaatgccacc 132  Q
    |||||||| | ||||  ||| ||||||| ||||    
T  31835180 aaagaactatactttttcaaattaaatggcacc 31835148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 4 - 132
Target Start/End: Original strand, 39523192 - 39523319
Alignment:
Q  4 aagatagtataaaaaataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatgggaaag 103  Q
    |||||||| ||||||||||| ||||| ||||||||||||| |||  || ||||||||||||||||||||||||||||| ||||||   ||| ||| ||||    
T  39523192 aagatagtgtaaaaaataatttagtg-ttgagagagtatggtaaagatgtattcctcatttaatctaatggacatgatcaactttcccatggtggaaaag 39523290  T
Q  104 aactctcctttcccaagttaaatgccacc 132  Q
    |||||||||||||||| ||||||| ||||    
T  39523291 aactctcctttcccaaattaaatggcacc 39523319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 11806209 - 11806135
Alignment:
Q  13 taaaaaataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttt 88  Q
    |||||||||| |||||| ||||||||||| ||||| ||| | ||||||||||||||||||||||||||||||||||    
T  11806209 taaaaaataaactagtg-ttgagagagtaggataaaaatgtgttcctcatttaatctaatggacatgattaacttt 11806135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 118
Target Start/End: Original strand, 36451347 - 36451461
Alignment:
Q  4 aagatagtataaaa-aataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatgggaaa 102  Q
    |||||||| ||||| |||||||||||| ||||||||||| |||||| || | ||  |||||||||||||||||||| || |||||||  ||| || ||||    
T  36451347 aagatagtgtaaaacaataatctagtg-ttgagagagtaggataaggatttgtttttcatttaatctaatggacataatcaacttttccatggtgagaaa 36451445  T
Q  103 gaactctcctttccca 118  Q
     |||||  ||||||||    
T  36451446 caactcctctttccca 36451461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 88
Target Start/End: Original strand, 17648064 - 17648148
Alignment:
Q  4 aagatagtataaaa-aataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttt 88  Q
    |||||||| ||||| |||||| ||||| ||||||||||| ||||||||| |||| || ||||||||||||||| || || ||||||    
T  17648064 aagatagtgtaaaacaataatatagtg-ttgagagagtaagataagaatttatttcttatttaatctaatggatataatcaacttt 17648148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 132
Target Start/End: Complemental strand, 30808713 - 30808621
Alignment:
Q  40 tatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatgggaaagaactctcctttcccaagttaaatgccacc 132  Q
    |||||||||||| ||||| | | |||||||||||| ||   ||||||||   ||| ||||||| |||||||||||||||  ||||||||||||    
T  30808713 tatgataagaatgtattcattacttaatctaatggtcaaatttaactttcccatggtgggaaacaactctcctttcccattttaaatgccacc 30808621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 118
Target Start/End: Complemental strand, 25970205 - 25970120
Alignment:
Q  32 tgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatgggaaagaactctcctttccca 118  Q
    ||||||||||||||||  || | || ||||||||||||||||||||| || ||||||   ||| ||||||| ||||| |||||||||    
T  25970205 tgagagagtatgataaagatttgtttctcatttaatctaatggacat-atcaactttcccatggtgggaaacaactcccctttccca 25970120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 132
Target Start/End: Original strand, 25970722 - 25970851
Alignment:
Q  4 aagatagtataaaa-aataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatgggaaa 102  Q
    |||||||| ||||| || |||||||||  |||||||||| |||||  || | || ||||||||||  ||||||||| || |||||| | ||| |||||||    
T  25970722 aagatagtgtaaaacaacaatctagtgtatgagagagtaggataaagatttgttactcatttaattcaatggacataatcaactttctcatggtgggaaa 25970821  T
Q  103 gaactctcctttcccaagttaaatgccacc 132  Q
     ||||| | |||||||   |||||||||||    
T  25970822 caactcccttttcccatactaaatgccacc 25970851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 132
Target Start/End: Complemental strand, 28683557 - 28683508
Alignment:
Q  83 aacttttttatgatgggaaagaactctcctttcccaagttaaatgccacc 132  Q
    |||||||| || ||||||||||| ||||||| ||||| ||||||||||||    
T  28683557 aactttttcataatgggaaagaagtctccttccccaaattaaatgccacc 28683508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 132
Target Start/End: Complemental strand, 36450857 - 36450728
Alignment:
Q  4 aagatagtataaaa-aataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatgggaaa 102  Q
    |||||||| ||||| || |||||||||  |||||||||| |||||  || | || ||||||||||| ||||||||| || ||||||   ||| ||| |||    
T  36450857 aagatagtgtaaaacaacaatctagtgtatgagagagtaggataaagatttgttactcatttaatccaatggacataatcaactttcccatggtggaaaa 36450758  T
Q  103 gaactctcctttcccaagttaaatgccacc 132  Q
     ||||| ||||||||| | ||||| |||||    
T  36450757 caactcccctttcccatgctaaataccacc 36450728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 133
Target Start/End: Complemental strand, 47376892 - 47376851
Alignment:
Q  92 atgatgggaaagaactctcctttcccaagttaaatgccaccg 133  Q
    ||||||||||| ||||| |||||||||| |||||||||||||    
T  47376892 atgatgggaaacaactcccctttcccaaattaaatgccaccg 47376851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 7e-43; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 37548130 - 37547998
Alignment:
Q  1 tgaaagatagtataaaaaa-taatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||   ||||||||    
T  37548130 tgaaagatggtataaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatgatcaactttcccatgatggg 37548031  T
Q  100 aaagaactctcctttcccaagttaaatgccacc 132  Q
    |||||||||||||||||||| ||||||| ||||    
T  37548030 aaagaactctcctttcccaaattaaatggcacc 37547998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 21471870 - 21472002
Alignment:
Q  1 tgaaagatagtataaaa-aataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||| ||||||   ||| ||||    
T  21471870 tgaaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggatatgatcaactttcccatggtggg 21471969  T
Q  100 aaagaactctcctttcccaagttaaatgccacc 132  Q
    |||||||||||||||||||| ||||||| ||||    
T  21471970 aaagaactctcctttcccaaattaaatggcacc 21472002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 13134450 - 13134318
Alignment:
Q  1 tgaaagatagtataaaaaa-taatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||  ||||| ||||||||||||| ||||||||||||| ||||||  |||| ||||    
T  13134450 tgaaagatagtataaaaaaataatctagtggttgatagagtatgatagaaatatgttcctcatttaatttaatggacatgatcaactttcctatggtggg 13134351  T
Q  100 aaagaactctcctttcccaagttaaatgccacc 132  Q
    |||||||||||||||||||| ||||||| ||||    
T  13134350 aaagaactctcctttcccaaattaaatggcacc 13134318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 21471149 - 21471017
Alignment:
Q  1 tgaaagatagtataaaaaa-taatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||| |||||| ||| ||||||||||||||||||||||| ||||||   ||| ||||    
T  21471149 tgaaagatagtataaaaaaataatctagtggctgagagagtatgataggaatatgttcttcatttaatctaatggacatgatcaactttcccatggtggg 21471050  T
Q  100 aaagaactctcctttcccaagttaaatgccacc 132  Q
    |||||||||||||||||||| ||||||| ||||    
T  21471049 aaagaactctcctttcccaaattaaatggcacc 21471017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 4479620 - 4479750
Alignment:
Q  1 tgaaagatagtataaaaaataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggga 100  Q
    ||||||||| ||||||||||||| ||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||   ||| || ||    
T  4479620 tgaaagataatataaaaaataatttagtg-tggagagagtatgataagaatatgttcctcatttaatctaatggacatgattaactttcccatggtgaga 4479718  T
Q  101 aagaactctcctttcccaagttaaatgccacc 132  Q
    ||||||||||||||||||| ||||||| ||||    
T  4479719 aagaactctcctttcccaaattaaatggcacc 4479750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 15 - 132
Target Start/End: Original strand, 14573930 - 14574047
Alignment:
Q  15 aaaaataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatgggaaagaactctccttt 114  Q
    ||||| |||||||||||||||||||||||||| |||||| || |||||||||||||||||| ||||| |||||| ||||| |||||||||||||||||||    
T  14573930 aaaaacaatctagtggttgagagagtatgataggaatatgtttctcatttaatctaatggatatgatcaactttcttatggtgggaaagaactctccttt 14574029  T
Q  115 cccaagttaaatgccacc 132  Q
    ||||| ||||||| ||||    
T  14574030 cccaaattaaatggcacc 14574047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 38834519 - 38834387
Alignment:
Q  1 tgaaagatagtataaaaaa-taatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||    || ||||    
T  38834519 tgaaagatagtataaaaaaataatctagtggttgagagagtatgataaaaatatgttcctcatttaatctaatggacatgatcaactttcccgtggtggg 38834420  T
Q  100 aaagaactctcctttcccaagttaaatgccacc 132  Q
    |||| || |||||||||||| ||||||| ||||    
T  38834419 aaagtaccctcctttcccaaattaaatggcacc 38834387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 14573374 - 14573260
Alignment:
Q  18 aataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatgggaaagaactctcctttccc 117  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||   ||| ||||||| ||||||||||||||    
T  14573374 aataatctagtg-ttgagagagtatgataaaaatatattcctcatttaatctaatggacatgatcaactttcccatggtgggaaaaaactctcctttccc 14573276  T
Q  118 aagttaaatgccaccg 133  Q
    || ||||||| |||||    
T  14573275 aaattaaatggcaccg 14573260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 38834552 - 38834684
Alignment:
Q  1 tgaaagatagtataaaa-aataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||||  ||||| ||| ||||||||||||||||||||||| ||||||   | | | ||    
T  38834552 tgaaagataatataaaaaaataatctagtggttgagagagtatgatagaaatatgttcttcatttaatctaatggacatgatcaactttcccacggtagg 38834651  T
Q  100 aaagaactctcctttcccaagttaaatgccacc 132  Q
    ||| |||||||||||||||| ||||||| ||||    
T  38834652 aaaaaactctcctttcccaaattaaatggcacc 38834684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 4478981 - 4478936
Alignment:
Q  1 tgaaagatagtataaaaaataatctagtggttgagagagtatgataa 47  Q
    |||||||||||||||||||||||||||| || |||||||||||||||    
T  4478981 tgaaagatagtataaaaaataatctagt-gtggagagagtatgataa 4478936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 132
Target Start/End: Complemental strand, 5276501 - 5276465
Alignment:
Q  96 tgggaaagaactctcctttcccaagttaaatgccacc 132  Q
    |||||||||| ||||||||||||||||||||||||||    
T  5276501 tgggaaagaagtctcctttcccaagttaaatgccacc 5276465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 132
Target Start/End: Original strand, 1164788 - 1164824
Alignment:
Q  96 tgggaaagaactctcctttcccaagttaaatgccacc 132  Q
    |||||||||||||||||||||||| ||||||| ||||    
T  1164788 tgggaaagaactctcctttcccaaattaaatggcacc 1164824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 11256699 - 11256766
Alignment:
Q  4 aagatagtataaaaaataatctagtggttgagagagtatgataagaatatattcctcatttaatctaat 72  Q
    |||||||| | || || ||||||||| ||||||||| ||| ||||||||||||| ||| ||||||||||    
T  11256699 aagatagtgtgaagaaaaatctagtg-ttgagagagcatgttaagaatatattcttcacttaatctaat 11256766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 132
Target Start/End: Complemental strand, 45139732 - 45139692
Alignment:
Q  92 atgatgggaaagaactctcctttcccaagttaaatgccacc 132  Q
    ||||||| |||||| ||||||||||||| ||||||||||||    
T  45139732 atgatggaaaagaagtctcctttcccaaattaaatgccacc 45139692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 27348 - 27220
Alignment:
Q  4 aagatagtataaaaaataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatgggaaag 103  Q
    |||||||| ||||||||||| ||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||   ||||||||||||    
T  27348 aagatagtgtaaaaaataatttagtg-ttgagagagtatgataagaatgtgttcctcatttaatctaatggacatgatcaactttcccatgatgggaaag 27250  T
Q  104 aactctcctttcccaagttaaatgccaccg 133  Q
    |||||||||||||||| ||||||| |||||    
T  27249 aactctcctttcccaaattaaatggcaccg 27220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 43 - 132
Target Start/End: Original strand, 27534 - 27623
Alignment:
Q  43 gataagaatatattcctcatttaatctaatggacatgattaacttttttatgatgggaaagaactctcctttcccaagttaaatgccacc 132  Q
    |||| |||||| ||||||||||||||||||||| ||||| ||||||   ||| ||||||| ||||||||||| |||| ||||||| ||||    
T  27534 gataggaatatgttcctcatttaatctaatggatatgatcaactttcccatggtgggaaaaaactctccttttccaaattaaatggcacc 27623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 75 - 208
Alignment:
Q  1 tgaaagatagtataaaa--aataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatgg 98  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||| || ||||||   ||| |||    
T  75 tgaaagatagtataaaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatgaacataatcaactttcccatggtgg 174  T
Q  99 gaaagaactctcctttcccaagttaaatgccacc 132  Q
    ||||||||||||||||||||| ||||||| ||||    
T  175 gaaagaactctcctttcccaaattaaatggcacc 208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0332 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0332
Description:

Target: scaffold0332; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 9174 - 9306
Alignment:
Q  1 tgaaagatagtataaaa-aataatctagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgattaacttttttatgatggg 99  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||  ||| ||      
T  9174 tgaaagatagtataaaaaaataatctagtggttgagagagtatgataagaatatgttcatcatttaatctaatggacatgatgaacttttccatggtgaa 9273  T
Q  100 aaagaactctcctttcccaagttaaatgccacc 132  Q
    ||| ||||||||||| |||| ||||||| ||||    
T  9274 aaaaaactctccttttccaaattaaatgacacc 9306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University