View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10460_low_17 (Length: 323)

Name: NF10460_low_17
Description: NF10460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10460_low_17
NF10460_low_17
[»] chr4 (14 HSPs)
chr4 (112-322)||(5172642-5172852)
chr4 (112-322)||(4842673-4842883)
chr4 (114-323)||(5159721-5159934)
chr4 (112-323)||(5195366-5195578)
chr4 (112-323)||(5181968-5182184)
chr4 (1-119)||(5159986-5160104)
chr4 (1-119)||(5195628-5195746)
chr4 (112-254)||(5213602-5213744)
chr4 (1-116)||(5172905-5173020)
chr4 (1-116)||(4842505-4842620)
chr4 (1-119)||(5182234-5182349)
chr4 (1-119)||(4856982-4857097)
chr4 (42-119)||(5213794-5213871)
chr4 (1-116)||(5202773-5202885)


Alignment Details
Target: chr4 (Bit Score: 151; Significance: 7e-80; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 112 - 322
Target Start/End: Complemental strand, 5172852 - 5172642
Alignment:
Q  112 aatttccactgaacaaattatcgctaagatcaagaagtctgaggtttgttaagttgcttaaacactcaggaagtttagcaccaaacatgttatagttgat 211  Q
    ||||||||||||| | ||||| |||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||| | | ||||    
T  5172852 aatttccactgaatagattatggctaaggtcaagaattctgaggtttgttaagttacttaaacactcaggaagtttagccccaaacatgtttttgctgat 5172753  T
Q  212 atctagttcttccaaatccttcaaattgcataatcctgtcataattaactatgtcctgtcatctttacaaaaattgacattatcataaaaatcttaaagt 311  Q
    ||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  5172752 atccagttctaccaaatccttcaaattgcatagtcctgtcataattaactatgtccagttatctttacaaaaattgacattatcataaaaatcttaaagt 5172653  T
Q  312 ttttccaatgg 322  Q
    |||||||||||    
T  5172652 ttttccaatgg 5172642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 112 - 322
Target Start/End: Original strand, 4842673 - 4842883
Alignment:
Q  112 aatttccactgaacaaattatcgctaagatcaagaagtctgaggtttgttaagttgcttaaacactcaggaagtttagcaccaaacatgttatagttgat 211  Q
    ||||||||| ||||| ||||| |||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||| | | ||||    
T  4842673 aatttccaccgaacagattatggctaaggtcaagaattctgaggtttgttaagttacttaaacactcaggaagtttagccccaaacatgtttttgctgat 4842772  T
Q  212 atctagttcttccaaatccttcaaattgcataatcctgtcataattaactatgtcctgtcatctttacaaaaattgacattatcataaaaatcttaaagt 311  Q
    ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||  ||||||| ||||||||||||||||||||||||    
T  4842773 atccagttcttccaaatccttcaaattgcatagtcctgtcataattaactatgtccggtcatctttcaaaaaattaacattatcataaaaatcttaaagt 4842872  T
Q  312 ttttccaatgg 322  Q
    |||||||||||    
T  4842873 ttttccaatgg 4842883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 114 - 323
Target Start/End: Complemental strand, 5159934 - 5159721
Alignment:
Q  114 tttccactgaacaaattatcgctaagatcaagaagtctgaggtttgttaagttgcttaaacactcaggaagtttagcaccaaacatgttatagttgatat 213  Q
    ||||||||||||| |||||  ||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||| | | ||||||    
T  5159934 tttccactgaacagattattactaagttcaagaactctgaggtttgttaagttgcttaaacactcaggaaatttagcactaaacatgttctggctgatat 5159835  T
Q  214 ctagttcttccaaatccttcaaattgcataatcctgtcataa----ttaactatgtcctgtcatctttacaaaaattgacattatcataaaaatcttaaa 309  Q
    | |||||| ||||||||||||||||||||| |||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5159834 ccagttctaccaaatccttcaaattgcatagtcctgtcataattaattaactatgtcctgtcatctttacaaaaattgacattatcataaaaatcttaaa 5159735  T
Q  310 gtttttccaatggc 323  Q
    ||||||||||||||    
T  5159734 gtttttccaatggc 5159721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 112 - 323
Target Start/End: Complemental strand, 5195578 - 5195366
Alignment:
Q  112 aatttccactgaacaaattatcgctaagatcaagaagtctgaggtttgttaagttgcttaaacactcaggaagtttagcaccaaacatgttatagttgat 211  Q
    ||||||||||||||| |||||  ||||| ||||||| ||||||||||||||||||||||||||| || ||||||||||||| ||||||||| | | ||||    
T  5195578 aatttccactgaacagattattactaagttcaagaactctgaggtttgttaagttgcttaaacaatctggaagtttagcactaaacatgtttttgctgat 5195479  T
Q  212 atctagttcttccaaatccttcaaattgcataatcctgtcataattaactatgtcctgtcatctttacaaaaattgacattatcataaaaatctt-aaag 310  Q
    ||| |||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5195478 atccagttctaccaaatccttaaaattgcatagtcctgtcataattaactatgtcctgtcatctttacaaaaattgacattatcataaaaatcttaaaag 5195379  T
Q  311 tttttccaatggc 323  Q
    |||||||||||||    
T  5195378 tttttccaatggc 5195366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 112 - 323
Target Start/End: Complemental strand, 5182184 - 5181968
Alignment:
Q  112 aatttccactgaacaaattatcgctaagatcaagaagtctgaggtttgttaagttgcttaaacactcaggaagtttagcaccaaacatgttatagttgat 211  Q
    ||||||||||||||| |||||  ||||| ||||||| ||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||    
T  5182184 aatttccactgaacagattattactaagttcaagaactctaaggtttgttaagttgcttaaacactctggaagtttagcactaaacatgttatagctgat 5182085  T
Q  212 atctagttcttccaaatccttcaaattgcataatcctgtcataa----ttaactatgtcctgtcatctttacaaaaattgacattatcataaaaatctt- 306  Q
    ||| | |||| ||||||||||||||||||||| |||||||||||    |||||||||||||||||||| ||||||||||||||||||||||||||||||     
T  5182084 atccaattctaccaaatccttcaaattgcatagtcctgtcataattaattaactatgtcctgtcatctatacaaaaattgacattatcataaaaatctta 5181985  T
Q  307 aaagtttttccaatggc 323  Q
    |||||||||||||||||    
T  5181984 aaagtttttccaatggc 5181968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 5160104 - 5159986
Alignment:
Q  1 ttgttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattagccaaagtgctcaatgaaaatga 100  Q
    ||||||||||||||||||||| ||||||| |  ||||||| ||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||    
T  5160104 ttgttttttcagtttcaatgtctactccaatattgttttttgatgaaatatatagaacctcaagattggaatgattagccaaagtgctcaatgaaaatga 5160005  T
Q  101 tccttgcatgtaatttcca 119  Q
    |||||||||||||||||||    
T  5160004 tccttgcatgtaatttcca 5159986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 5195746 - 5195628
Alignment:
Q  1 ttgttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattagccaaagtgctcaatgaaaatga 100  Q
    ||||||||||||||||||||| ||||||| |  ||||||| ||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||    
T  5195746 ttgttttttcagtttcaatgtctactccaatattgttttttgatgaaatatatagaacctcaagattggaatgattagccaaagtgctcaatgaaaatga 5195647  T
Q  101 tccttgcatgtaatttcca 119  Q
    |||||||||||||||||||    
T  5195646 tccttgcatgtaatttcca 5195628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 112 - 254
Target Start/End: Complemental strand, 5213744 - 5213602
Alignment:
Q  112 aatttccactgaacaaattatcgctaagatcaagaagtctgaggtttgttaagttgcttaaacactcaggaagtttagcaccaaacatgttatagttgat 211  Q
    ||||||||||||||||||||| |||||| |||||||   | |||||||||||||||||||||||||| |||||||  || | ||||||||||||| ||||    
T  5213744 aatttccactgaacaaattatagctaagttcaagaacattcaggtttgttaagttgcttaaacactcgggaagttgcgcgctaaacatgttatagctgat 5213645  T
Q  212 atctagttcttccaaatccttcaaattgcataatcctgtcata 254  Q
    |||||| ||| ||||||||||||| ||||||| ||||||||||    
T  5213644 atctagctctaccaaatccttcaatttgcatagtcctgtcata 5213602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 5173020 - 5172905
Alignment:
Q  1 ttgttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattagccaaagtgctcaatgaaaatga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  | |||||||| | |||||||||||| || | | |||||||||    
T  5173020 ttgttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatgtagatgctgaagattggagtgattagccaaaatgataagtgaaaatga 5172921  T
Q  101 tccttgcatgtaattt 116  Q
    ||||||||||||||||    
T  5172920 tccttgcatgtaattt 5172905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 4842505 - 4842620
Alignment:
Q  1 ttgttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattagccaaagtgctcaatgaaaatga 100  Q
    ||||||||||||||||||||||||||||| | |||||||| |||||||||||||||  | |||||||| | |||||||||||| || | | |||||||||    
T  4842505 ttgttttttcagtttcaatgtgtactccaatactgtttttagatgaaatatatagatgctgaagattggagtgattagccaaattgataagtgaaaatga 4842604  T
Q  101 tccttgcatgtaattt 116  Q
    ||||||||||||||||    
T  4842605 tccttgcatgtaattt 4842620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 5182349 - 5182234
Alignment:
Q  1 ttgttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattagccaaagtgctcaatgaaaatga 100  Q
    |||| ||||||||||||||| | ||||||   ||||||| || |||||||||||||  | |||||||  | |||||||||||||||||||||||||||||    
T  5182349 ttgtcttttcagtttcaatgagaactcca---ctgttttccggtgaaatatatagatgctgaagatttgagtgattagccaaagtgctcaatgaaaatga 5182253  T
Q  101 tccttgcatgtaatttcca 119  Q
    |||||||||||||||||||    
T  5182252 tccttgcatgtaatttcca 5182234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 4856982 - 4857097
Alignment:
Q  1 ttgttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattagccaaagtgctcaatgaaaatga 100  Q
    |||| ||||||||||||||| | ||||||   ||||||| || |||||||||||||  | |||||||  | ||||||||||||||| |||||||||||||    
T  4856982 ttgtcttttcagtttcaatgagaactcca---ctgttttccggtgaaatatatagatgctgaagatttgagtgattagccaaagtggtcaatgaaaatga 4857078  T
Q  101 tccttgcatgtaatttcca 119  Q
    |||||||||||||||||||    
T  4857079 tccttgcatgtaatttcca 4857097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 42 - 119
Target Start/End: Complemental strand, 5213871 - 5213794
Alignment:
Q  42 gatgaaatatatagaacccgaagattgaaatgattagccaaagtgctcaatgaaaatgatccttgcatgtaatttcca 119  Q
    |||||||||||||||  | | |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5213871 gatgaaatatatagatgctggagattggagtgattagccaaagtgctcaatgaaaatgatccttgcatgtaatttcca 5213794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 5202885 - 5202773
Alignment:
Q  1 ttgttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattagccaaagtgctcaatgaaaatga 100  Q
    ||||||||| ||||||||||||| ||||| |||| | |   || |||||||||||| || ||||  |||| ||||||||||||||||| | ||||||||     
T  5202885 ttgttttttaagtttcaatgtgttctccaatgctttct---gaggaaatatatagatcctgaagcgtgaagtgattagccaaagtgcttactgaaaatgg 5202789  T
Q  101 tccttgcatgtaattt 116  Q
    ||||||| ||| ||||    
T  5202788 tccttgcgtgtgattt 5202773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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