View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10460_low_18 (Length: 318)
Name: NF10460_low_18
Description: NF10460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10460_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 36663077 - 36662772
Alignment:
| Q |
1 |
tgattgcatggtagttgcatcctcttgttagaaagacccattttgagagggcttcctaatgatggcggtgcttgaatagttagtcatagaacaacttatt |
100 |
Q |
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| T |
36663077 |
tgatcgcatggtagttgcatcctcttgttagaaagacccattttgagagggcttcctaatgatggcggtgcttgaatagttagtcatagaacaacttatt |
36662978 |
T |
|
| Q |
101 |
atacaactcctatttttctctatcaccacagaataattctatttccttgctagagattttctggtctttcatttttggggttctgtttttgacttctgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36662977 |
atacaactcctatttttctctatcaccacagaataattctatttccttgctagagattttctggtctttcatttttggggttctgtttttgacttctgaa |
36662878 |
T |
|
| Q |
201 |
cagttcagcnnnnnnnggaacctactcaannnnnnnataggttccttggttgaaatatagatgaaagtgaattattcgtccttgtgatttaataagtgtt |
300 |
Q |
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| T |
36662877 |
cagttcagcaaaaaaaggaacctactcaatttttttataggttccttggttgcaatatagatgaaagtgaattattcgtccttgtgatttaataagtgtt |
36662778 |
T |
|
| Q |
301 |
gtatgt |
306 |
Q |
| |
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||||| |
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| T |
36662777 |
ctatgt |
36662772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 154 - 209
Target Start/End: Complemental strand, 15525857 - 15525802
Alignment:
| Q |
154 |
agattttctggtctttcatttttggggttctgtttttgacttctgaacagttcagc |
209 |
Q |
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||||||||||||| || ||||||| |||||||||| |||||||| |||| |||||| |
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| T |
15525857 |
agattttctggtcgtttatttttgcggttctgtttatgacttctcaacaattcagc |
15525802 |
T |
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