View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10460_low_19 (Length: 311)
Name: NF10460_low_19
Description: NF10460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10460_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 19 - 298
Target Start/End: Original strand, 6070720 - 6070999
Alignment:
| Q |
19 |
gtatgtagtagtacaactctggttagagggtgcatagaatttaagaattcttaagcctttcatcttgctgaatgtgtcggcacttaaagataaatcatta |
118 |
Q |
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| T |
6070720 |
gtatgtagtagtacaactctggttagagggtgcatagaatttaagaattcttaagcctttcatcttgctgaatgtgtcggcacttaaagataaatcatta |
6070819 |
T |
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| Q |
119 |
ttttgagacaaatccaacattattccttcaatgaagctactcccctgcaggacaagaaagtaaaatttatccaattaattggttacatttcattagatag |
218 |
Q |
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| T |
6070820 |
ttttgagacaaatccaacattatgccttcaatgaagctactcccctgcaggacaagaaagtaaaatttatccaattaattggttacgttttattagatag |
6070919 |
T |
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| Q |
219 |
taatttaactgtgttgaaaacaatgtcagtttttcttccccttaccttgttttcttcaattacttcaagagctgctcttc |
298 |
Q |
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| T |
6070920 |
taatttaactgtgttgaaaaaaatgtcagtttttcttccccttaccttgttttcttcaattacatcaagagcttctcttc |
6070999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 39 - 207
Target Start/End: Original strand, 6195017 - 6195185
Alignment:
| Q |
39 |
ggttagagggtgcatagaatttaagaattcttaagcctttcatcttgctgaatgtgtcggcacttaaagataaatcattattttgagacaaatccaacat |
138 |
Q |
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| T |
6195017 |
ggttagagggtgcatggaatttaagaattcttaaggctttcatcttggtgaatgtgtcggcacttaaaggcaaatcattattttgtgacaaatccaatgt |
6195116 |
T |
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| Q |
139 |
tattccttcaatgaagctactcccctg-caggacaagaaagtaaaatttatccaattaattggttacatt |
207 |
Q |
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| T |
6195117 |
tatgccttcaattgagctactcccctgacaagagaagaaagt-aaatgtatccaatcaattagctacatt |
6195185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 9e-33; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 42 - 165
Target Start/End: Complemental strand, 37451938 - 37451815
Alignment:
| Q |
42 |
tagagggtgcatagaatttaagaattcttaagcctttcatcttgctgaatgtgtcggcacttaaagataaatcattattttgagacaaatccaacattat |
141 |
Q |
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| T |
37451938 |
tagagggtgcatggaatttaagaattctcaaggctttcatcttggtgaatgtatcggaagttaaaggtaaaacattgttttgagacaaatccaacattat |
37451839 |
T |
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| Q |
142 |
tccttcaatgaagctactcccctg |
165 |
Q |
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| T |
37451838 |
cccttcaattgagctactcccctg |
37451815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 294
Target Start/End: Complemental strand, 37451735 - 37451701
Alignment:
| Q |
260 |
ttaccttgttttcttcaattacttcaagagctgct |
294 |
Q |
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| T |
37451735 |
ttaccttgttttcttcaattacttcaaaagctgct |
37451701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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