View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10460_low_2 (Length: 672)
Name: NF10460_low_2
Description: NF10460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10460_low_2 |
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| [»] scaffold0728 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 641; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 641; E-Value: 0
Query Start/End: Original strand, 20 - 664
Target Start/End: Complemental strand, 31811213 - 31810569
Alignment:
| Q |
20 |
actcatagattgaaattggctaggagttgaaggttgcattgaaacaccatgtaacaggtccatttcttgatacaaatcccttgcactcaaagcatttttc |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31811213 |
actcatagattgaaattggctaggagttgaaggttgcattgaaacaccatgtaacaggtccatttcttgatacaaatcccttgcactcaaagcatttttc |
31811114 |
T |
|
| Q |
120 |
agctgcaatgaaggtggagtgagattgattttattcttccacatgtaatttccattcttaggagatgaatcagccaccaatggagacataggtggtgttg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31811113 |
agctgcaatgaaggtggagtgagattgattttattcttccacatgtaatttccattcttaggagatgaatcagccaccaatggagacataggtggtgttg |
31811014 |
T |
|
| Q |
220 |
aaacatttgaaattggtaatgattcttgtgaaggcatagctgaaccagtagaagcatataaaggcctcaactcttcatgtttgtgtgcaaagaaacacac |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31811013 |
aaacatttgaaattggtaatgattcttgtgaaggcatagctgaaccagtagaagcatataaaggcctcaactcttcatgtttgtgtgcaaagaaacacac |
31810914 |
T |
|
| Q |
320 |
tttcctagtacacctaatctcatctttacaaagccttgttctgtattgtgaaggatgaagcaaagactcaaaaacaccatgtgaatactcacatgaatct |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
31810913 |
tttcctagtacacctaatctcatctttacaaagccttgttctgtattgtgaaggatgaagcaaagactcaaaaataccatgtgaatactcacatgaatct |
31810814 |
T |
|
| Q |
420 |
ttcttctggcatgttcctttgcgaaactcggggcacggaacacagctataaggatacttccttggatctctcctcctagcattctcccctggatgaacaa |
519 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31810813 |
ttcttctggcatgttcctttgcgaaactcggggcacggaacacagctataaggatacttccttggatctctcctcctagcattctcccctggatgaacaa |
31810714 |
T |
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| Q |
520 |
atggacactcagtccaatcatgagtgtaaccccttgaacaagtctttactttgaaactatacattctaaattcatctgttacaaaaacaccattgtttat |
619 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31810713 |
atggacactcagtccaatcatgagtgtaaccccttgaacaagtctttactttgaaactatacattctaaattcatctgttacaaaaacaccattgtttat |
31810614 |
T |
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| Q |
620 |
atcaggcaatgatgtatcaatagcatatcctgaatctttcttctc |
664 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31810613 |
atcaggcaatgatgtatcaatagcatatcctgaatctttcttctc |
31810569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 504 - 598
Target Start/End: Complemental strand, 25812709 - 25812616
Alignment:
| Q |
504 |
tcccctggatgaacaaatggacactcagtccaatcatgagtgtaaccccttgaacaagtctttactttgaaactatacattctaaattcatctgt |
598 |
Q |
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||||||||||||||||| || ||||||||||||||||||| ||| |||||||||||| ||| |||||||| || |||| |||||||||||||| |
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| T |
25812709 |
tcccctggatgaacaaaggggcactcagtccaatcatgagaataa-cccttgaacaaggcttcactttgaatgtaaacatcctaaattcatctgt |
25812616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 486 - 543
Target Start/End: Original strand, 9314769 - 9314826
Alignment:
| Q |
486 |
tctctcctcctagcattctcccctggatgaacaaatggacactcagtccaatcatgag |
543 |
Q |
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|||||||| | ||||||||| || ||||| ||||| |||||||||||||||||||||| |
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| T |
9314769 |
tctctccttcgagcattctctccaggatgcacaaaaggacactcagtccaatcatgag |
9314826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 116; Significance: 1e-58; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 247 - 642
Target Start/End: Complemental strand, 35643992 - 35643597
Alignment:
| Q |
247 |
gtgaaggcatagctgaaccagtagaagcatataaaggcctcaactcttcatgtttgtgtgcaaagaaacacactttcctagtacacctaatctcatcttt |
346 |
Q |
| |
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|||||||||||||||| ||||| |||||||| | || | || |||||| || |||| |||||||| || ||||| ||| | || | | |||| || || |
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| T |
35643992 |
gtgaaggcatagctgacccagtggaagcatacacggggcgcagctcttcgggtctgtgagcaaagaagcagacttttctattgcagccagtctcgtcctt |
35643893 |
T |
|
| Q |
347 |
acaaagccttgttctgtattgtgaaggatgaagcaaagactcaaaaacaccatgtgaatactcacatgaatctttcttctggcatgttcctttgcgaaac |
446 |
Q |
| |
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||||||||||||| |||||||| ||||| ||| | ||||| ||||||||||||| ||||||||| ||||| |||||||| | |||||||||||| |
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| T |
35643892 |
gcaaagccttgttcggtattgtgcgggatgtagccatgactcgaaaacaccatgtgcatactcacaagaatcccctttctggcaagaccctttgcgaaac |
35643793 |
T |
|
| Q |
447 |
tcggggcacggaacacagctataaggatacttccttggatctctcctcctagcattctcccctggatgaacaaatggacactcagtccaatcatgagtgt |
546 |
Q |
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|| ||||| ||||||||||| ||||| || |||||||| ||||||||||| |||||||| |||||||||||||| |||||||| |||||||| |||| || |
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| T |
35643792 |
tctgggcagggaacacagctgtaagggtatttccttgggtctctcctccttgcattctcacctggatgaacaaagggacactccgtccaatcgtgagagt |
35643693 |
T |
|
| Q |
547 |
aaccccttgaacaagtctttactttgaaactatacattctaaattcatctgttacaaaaacaccattgtttatatcaggcaatgatgtatcaatag |
642 |
Q |
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|| |||| || || | ||| || |||||||| ||||| ||||| ||||||| | || | ||||| |||||||| || ||||| ||| ||||||||| |
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| T |
35643692 |
aagccctcgagcatggcttcaccttgaaactgtacatcctaaactcatctgatccatatacaccgttgtttatgtcgggcaacgatatatcaatag |
35643597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 434 - 595
Target Start/End: Complemental strand, 30122405 - 30122244
Alignment:
| Q |
434 |
tcctttgcgaaactcggggcacggaacacagctataaggatacttccttggatctctcctcctagcattctcccctggatgaacaaatggacactcagtc |
533 |
Q |
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|||||| |||||||| || || || || ||||||||| |||| ||||||||||| | | ||| ||||| ||||||||||||||||| |||||||| ||| |
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| T |
30122405 |
tcctttccgaaactcaggacaagggacgcagctataatgatatttccttggatcgcgtcgccttgcattttcccctggatgaacaaaaggacactcggtc |
30122306 |
T |
|
| Q |
534 |
caatcatgagtgtaaccccttgaacaagtctttactttgaaactatacattctaaattcatc |
595 |
Q |
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|||||||||| ||| |||||||||||| ||| |||||||| ||||||| ||||| ||||| |
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| T |
30122305 |
caatcatgagaataagcccttgaacaaggcttcactttgaatgtatacatcctaaactcatc |
30122244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 339 - 598
Target Start/End: Complemental strand, 33648072 - 33647813
Alignment:
| Q |
339 |
tcatctttacaaagccttgttctgtattgtgaaggatgaagcaaagactcaaaaacaccatgtgaatactcacatgaatctttcttctggcatgttcctt |
438 |
Q |
| |
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||||| || |||||||||||||||||||| | |||||||||| | | ||||||| |||||||| ||| ||| | | ||| || | ||||| ||| | |
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| T |
33648072 |
tcatccttgcaaagccttgttctgtattgagcaggatgaagccagcattcaaaaataccatgtgcatattcagaagcatcccctttgttgcatgatccct |
33647973 |
T |
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| Q |
439 |
tgcgaaactcggggcacggaacacagctataaggatacttccttggatctctcctcctagcattctcccctggatgaacaaatggacactcagtccaatc |
538 |
Q |
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| |||||||||||||| || ||||| | ||| || | ||||| |||| | | ||| ||||||||||| ||||||||||| || |||||||||||||| |
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| T |
33647972 |
tccgaaactcggggcaagggacacatgtgtaatgacatttcctcagatcgcggcgccttgcattctccccaggatgaacaaaggggcactcagtccaatc |
33647873 |
T |
|
| Q |
539 |
atgagtgtaaccccttgaacaagtctttactttgaaactatacattctaaattcatctgt |
598 |
Q |
| |
|
||||| ||| |||||||||||| ||| |||||||| || |||| |||||||||||||| |
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|
| T |
33647872 |
atgagaataagcccttgaacaaggcttcactttgaatgtaaacatcctaaattcatctgt |
33647813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 486 - 543
Target Start/End: Complemental strand, 19409114 - 19409057
Alignment:
| Q |
486 |
tctctcctcctagcattctcccctggatgaacaaatggacactcagtccaatcatgag |
543 |
Q |
| |
|
|||||||||| ||| ||||| || ||||| ||| |||||||||||||||||||||||| |
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|
| T |
19409114 |
tctctcctccgagccttctctccgggatgcacatatggacactcagtccaatcatgag |
19409057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 438 - 541
Target Start/End: Complemental strand, 36456370 - 36456267
Alignment:
| Q |
438 |
ttgcgaaactcggggcacggaacacagctataaggatacttccttggatctctcctcctagcattctcccctggatgaacaaatggacactcagtccaat |
537 |
Q |
| |
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|||||||| || || || || |||||||| ||| ||||||| || || || || |||| ||||||||||||||||||||||| || || |||||||||| |
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| T |
36456370 |
ttgcgaaaatcaggacaagggacacagctgtaatgatactttctcgggtcccttctccgggcattctcccctggatgaacaaaagggcattcagtccaat |
36456271 |
T |
|
| Q |
538 |
catg |
541 |
Q |
| |
|
|||| |
|
|
| T |
36456270 |
catg |
36456267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0728 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0728
Description:
Target: scaffold0728; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 486 - 543
Target Start/End: Complemental strand, 4680 - 4623
Alignment:
| Q |
486 |
tctctcctcctagcattctcccctggatgaacaaatggacactcagtccaatcatgag |
543 |
Q |
| |
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|||||||||| ||| ||||| || ||||| ||| |||||||||||||||||||||||| |
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| T |
4680 |
tctctcctccgagccttctctccgggatgcacatatggacactcagtccaatcatgag |
4623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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