View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10460_low_22 (Length: 290)
Name: NF10460_low_22
Description: NF10460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10460_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 59 - 273
Target Start/End: Complemental strand, 23827294 - 23827080
Alignment:
| Q |
59 |
ttagtaatgaagttcaaggaaggatatagacaagagaaaaagcaaggaggagagctgaaaaaggttgtttatatgtagggaactaatatgggtgaatata |
158 |
Q |
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| T |
23827294 |
ttagtaatgaagttcaaggaaggatatagacaagagaaaaagcaaggaggagagctgaaaaaggtggtttatatgtagggaactaatatgggtgaatata |
23827195 |
T |
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| Q |
159 |
ctgtggtggcccacaaaagcaagatcgatgaagcactaacatagacacgaaattgcactaatgcgtgtatacacaacaatttaataaaatgcaagtgatt |
258 |
Q |
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| T |
23827194 |
ctgtggtggcccacaaaagcaagatcgatgaagcactaacacagacacgaaatagcactaatgcgtgtatacacaacaatttaataaaatgcaagtgatt |
23827095 |
T |
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| Q |
259 |
gaatcgaatgtaatt |
273 |
Q |
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| T |
23827094 |
gaatcgaatgtaatt |
23827080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 62 - 171
Target Start/End: Complemental strand, 23831338 - 23831229
Alignment:
| Q |
62 |
gtaatgaagttcaaggaaggatatagacaagagaaaaagcaaggaggagagctgaaaaaggttgtttatatgtagggaactaatatgggtgaatatactg |
161 |
Q |
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||||||||||||||||||| ||||| | |||| ||| || ||||||||||| |||| ||| |||| |||||||| |||||||||||| ||| | | ||| |
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| T |
23831338 |
gtaatgaagttcaaggaagaatataaagaagaaaaacaggaaggaggagaggtgaagaagagtgttgatatgtagagaactaatatggatgagtcttctg |
23831239 |
T |
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| Q |
162 |
tggtggccca |
171 |
Q |
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| T |
23831238 |
tggtggccca |
23831229 |
T |
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Back To:
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