View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10460_low_24 (Length: 267)
Name: NF10460_low_24
Description: NF10460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10460_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 7243707 - 7243506
Alignment:
| Q |
1 |
ggttgccaatgaaaaaagccattgcaatttgcagtcagatgagaggaaacgtacaaacgaaaaccagttgttgagagtgtgttgttgatcgaagaagcaa |
100 |
Q |
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| T |
7243707 |
ggttgtcaatgaaaaaagccattgcaatttgcagtcagaagagaggaaacgtacaaacgaaaaccagttcttgagagtgtgttgttgatcgaagaagcaa |
7243608 |
T |
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| Q |
101 |
gcaacaaagctaagagtaattcttcaacaagaaagtgagaaacacatatatgtagggttagggtttctagggttttgacagcaattcttggacagtgagt |
200 |
Q |
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| T |
7243607 |
ccaacaaagctaagagtagttcttcgacaagaaagtgagaaacacatatatgtagggttagggtttctagggttttgactgcaattcttggacagtgagt |
7243508 |
T |
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| Q |
201 |
ga |
202 |
Q |
| |
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|| |
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| T |
7243507 |
ga |
7243506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 53 - 253
Target Start/End: Original strand, 7324694 - 7324905
Alignment:
| Q |
53 |
acaaacgaaaaccagttgttgagagtgtgttgttgatcgaagaagcaagcaacaaagctaagagtaattcttcaacaagaaagtgagaaacacatatat- |
151 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||| |||||| | |||||||||||| ||||||||| |||||| |
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| T |
7324694 |
acaaacgaaaaacagttgttgagagtgtgttgttgatcgaagaagcaaccaacaaacctatgagtaaatgttcaacaagaaaatgagaaacaaatatatt |
7324793 |
T |
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| Q |
152 |
-----------gtagggttagggtttctagggttttgacagcaattcttggacagtgagtgaatgtgacagtgagtgagtgaatagatatatttataggt |
240 |
Q |
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| T |
7324794 |
atttatagtatgtagggttagggttt-taaggttttgactgcaattcttgttcagtgagtgaatgtgacagtgagtgagtgaatagatataattataggt |
7324892 |
T |
|
| Q |
241 |
ttagggttttgtg |
253 |
Q |
| |
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||||||||||||| |
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| T |
7324893 |
ttagggttttgtg |
7324905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 207 - 253
Target Start/End: Complemental strand, 7243517 - 7243471
Alignment:
| Q |
207 |
gacagtgagtgagtgaatagatatatttataggtttagggttttgtg |
253 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
7243517 |
gacagtgagtgagtgaatagataaatttataggtttagggttttgtg |
7243471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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