View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10460_low_26 (Length: 251)

Name: NF10460_low_26
Description: NF10460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10460_low_26
NF10460_low_26
[»] chr5 (9 HSPs)
chr5 (20-251)||(6326363-6326601)
chr5 (137-195)||(6316994-6317052)
chr5 (74-129)||(6317164-6317219)
chr5 (27-128)||(6317255-6317366)
chr5 (201-251)||(36642828-36642877)
chr5 (219-251)||(19820460-19820492)
chr5 (199-251)||(21522691-21522743)
chr5 (199-251)||(21533257-21533309)
chr5 (219-251)||(22013375-22013407)
[»] chr1 (4 HSPs)
chr1 (138-195)||(39832752-39832809)
chr1 (203-248)||(3490453-3490498)
chr1 (214-251)||(48040528-48040565)
chr1 (219-251)||(5927406-5927438)
[»] chr4 (2 HSPs)
chr4 (202-251)||(36635268-36635317)
chr4 (201-247)||(23293056-23293102)
[»] scaffold0053 (1 HSPs)
scaffold0053 (201-251)||(8741-8791)
[»] chr3 (2 HSPs)
chr3 (201-251)||(7171445-7171495)
chr3 (201-249)||(750687-750735)
[»] scaffold0021 (1 HSPs)
scaffold0021 (202-247)||(130426-130471)
[»] chr7 (2 HSPs)
chr7 (202-251)||(9778452-9778501)
chr7 (219-251)||(27945002-27945034)
[»] chr6 (1 HSPs)
chr6 (203-251)||(16766642-16766690)
[»] chr2 (1 HSPs)
chr2 (201-249)||(18631467-18631515)


Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 20 - 251
Target Start/End: Complemental strand, 6326601 - 6326363
Alignment:
Q  20 ggtgagtcccttaggccatgatgtgctcaaaccagagaaaatcacatcaaactgccaaaatttagttaaggtctgtggttgaaccgtccaattcggtttc 119  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  6326601 ggtgagacccttaggtcatgatgtgctcaaaccagagaaaatcacatcaaactgccaaaatttagttaaggtctgtggttgaaccgtccaattcggcttc 6326502  T
Q  120 taaagtaatggattgcggagggtatcctctggcagatcttacacacttagaagacatttagtttaggagcacatac-------ggtatcctatgaagcat 212  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||       |||||||||||||||||    
T  6326501 taaagtaatggattgcggagggtatcctctggcagatctcacacacttagaagacatttagtttaggagcatataccattgggggtatcctatgaagcat 6326402  T
Q  213 agataaggatacagacaccggacacgacacggacactga 251  Q
     |||||||| || || |||||||||||||||||||||||    
T  6326401 ggataaggacacggataccggacacgacacggacactga 6326363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 137 - 195
Target Start/End: Complemental strand, 6317052 - 6316994
Alignment:
Q  137 gagggtatcctctggcagatcttacacacttagaagacatttagtttaggagcacatac 195  Q
    |||||||||||||| |||||  ||||||||||||||||||||||||||| |||||||||    
T  6317052 gagggtatcctctgacagatggtacacacttagaagacatttagtttagaagcacatac 6316994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 74 - 129
Target Start/End: Complemental strand, 6317219 - 6317164
Alignment:
Q  74 ccaaaatttagttaaggtctgtggttgaaccgtccaattcggtttctaaagtaatg 129  Q
    ||||| |||||||||||||  ||||| |||||||||||||||||||||||||||||    
T  6317219 ccaaactttagttaaggtcgttggtttaaccgtccaattcggtttctaaagtaatg 6317164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 128
Target Start/End: Complemental strand, 6317366 - 6317255
Alignment:
Q  27 cccttaggccatgatgtgctcaaaccagagaaaatcac-atcaaactg---------ccaaaatttagttaaggtctgtggttgaaccgtccaattcggt 116  Q
    ||||| || ||||||| ||||||||||||||||||||| |||||||||         ||||| ||||||||||||| || |||||||||||||||   ||    
T  6317366 cccttgggtcatgatgcgctcaaaccagagaaaatcacaatcaaactgcctaagtaaccaaactttagttaaggtcggtagttgaaccgtccaatcttgt 6317267  T
Q  117 ttctaaagtaat 128  Q
    ||| ||||||||    
T  6317266 ttccaaagtaat 6317255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 251
Target Start/End: Complemental strand, 36642877 - 36642828
Alignment:
Q  201 cctatgaagcatagataaggatacagacaccggacacgacacggacactga 251  Q
    |||||||||||| |||| ||| | |||||||||||||||||||||||||||    
T  36642877 cctatgaagcatggatacggaca-agacaccggacacgacacggacactga 36642828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 219 - 251
Target Start/End: Complemental strand, 19820492 - 19820460
Alignment:
Q  219 ggatacagacaccggacacgacacggacactga 251  Q
    |||||| ||||||||||||||||||||||||||    
T  19820492 ggatacggacaccggacacgacacggacactga 19820460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 21522691 - 21522743
Alignment:
Q  199 atcctatgaagcatagataaggatacagacaccggacacgacacggacactga 251  Q
    |||||||||||||  |||| ||| || | ||||||||||||||||||||||||    
T  21522691 atcctatgaagcacggatacggacacggtcaccggacacgacacggacactga 21522743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 21533257 - 21533309
Alignment:
Q  199 atcctatgaagcatagataaggatacagacaccggacacgacacggacactga 251  Q
    |||||||||||||  |||| ||| || | ||||||||||||||||||||||||    
T  21533257 atcctatgaagcacggatacggacacggtcaccggacacgacacggacactga 21533309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 219 - 251
Target Start/End: Original strand, 22013375 - 22013407
Alignment:
Q  219 ggatacagacaccggacacgacacggacactga 251  Q
    |||||| ||||||||||||||||||||||||||    
T  22013375 ggatacggacaccggacacgacacggacactga 22013407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 195
Target Start/End: Complemental strand, 39832809 - 39832752
Alignment:
Q  138 agggtatcctctggcagatcttacacacttagaagacatttagtttaggagcacatac 195  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||    
T  39832809 agggtatcctctgacagatgttacacacttagaagacatttagtttagaagcacatac 39832752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 248
Target Start/End: Complemental strand, 3490498 - 3490453
Alignment:
Q  203 tatgaagcatagataaggatacagacaccggacacgacacggacac 248  Q
    |||||||||  |||| |||||||||||||||||||||||| |||||    
T  3490498 tatgaagcacggatacggatacagacaccggacacgacactgacac 3490453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 214 - 251
Target Start/End: Complemental strand, 48040565 - 48040528
Alignment:
Q  214 gataaggatacagacaccggacacgacacggacactga 251  Q
    |||| |||||| ||||||||||||||||||||||||||    
T  48040565 gatatggatacggacaccggacacgacacggacactga 48040528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 219 - 251
Target Start/End: Complemental strand, 5927438 - 5927406
Alignment:
Q  219 ggatacagacaccggacacgacacggacactga 251  Q
    |||||| ||||||||||||||||||||||||||    
T  5927438 ggatacggacaccggacacgacacggacactga 5927406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 202 - 251
Target Start/End: Original strand, 36635268 - 36635317
Alignment:
Q  202 ctatgaagcatagataaggatacagacaccggacacgacacggacactga 251  Q
    ||||||||||| |||||||| |||||||||||||||||| ||||||||||    
T  36635268 ctatgaagcatggataaggacacagacaccggacacgactcggacactga 36635317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 247
Target Start/End: Complemental strand, 23293102 - 23293056
Alignment:
Q  201 cctatgaagcatagataaggatacagacaccggacacgacacggaca 247  Q
    ||||||||||| ||||| ||| || ||||||||||||||||||||||    
T  23293102 cctatgaagcacagatacggacacggacaccggacacgacacggaca 23293056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 201 - 251
Target Start/End: Original strand, 8741 - 8791
Alignment:
Q  201 cctatgaagcatagataaggatacagacaccggacacgacacggacactga 251  Q
    |||||||||||| |||| ||| || ||||||||||||||||||||||||||    
T  8741 cctatgaagcatggatacggacacggacaccggacacgacacggacactga 8791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 251
Target Start/End: Original strand, 7171445 - 7171495
Alignment:
Q  201 cctatgaagcatagataaggatacagacaccggacacgacacggacactga 251  Q
    |||||||||||  |||| ||| ||||||||||||||||||||||| |||||    
T  7171445 cctatgaagcacggatacggacacagacaccggacacgacacggatactga 7171495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 750735 - 750687
Alignment:
Q  201 cctatgaagcatagataaggatacagacaccggacacgacacggacact 249  Q
    |||||||||||  |||| ||| || ||||||||||||||||||||||||    
T  750735 cctatgaagcacggatacggacacggacaccggacacgacacggacact 750687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 247
Target Start/End: Original strand, 130426 - 130471
Alignment:
Q  202 ctatgaagcatagataaggatacagacaccggacacgacacggaca 247  Q
    ||||||||||| |||| ||| || ||||||||||||||||||||||    
T  130426 ctatgaagcatggatacggacacggacaccggacacgacacggaca 130471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 251
Target Start/End: Original strand, 9778452 - 9778501
Alignment:
Q  202 ctatgaagcatagataaggatacagacaccggacacgacacggacactga 251  Q
    ||||||||||  |||| ||| || ||||||||||||||||||||||||||    
T  9778452 ctatgaagcacggatacggacacggacaccggacacgacacggacactga 9778501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 219 - 251
Target Start/End: Original strand, 27945002 - 27945034
Alignment:
Q  219 ggatacagacaccggacacgacacggacactga 251  Q
    |||||| ||||||||||||||||||||||||||    
T  27945002 ggatacggacaccggacacgacacggacactga 27945034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 16766642 - 16766690
Alignment:
Q  203 tatgaagcatagataaggatacagacaccggacacgacacggacactga 251  Q
    |||||||||| |||| ||| || |||||||||||||||| |||||||||    
T  16766642 tatgaagcatggatacggacacggacaccggacacgacatggacactga 16766690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 18631515 - 18631467
Alignment:
Q  201 cctatgaagcatagataaggatacagacaccggacacgacacggacact 249  Q
    ||||||||||| ||||| | | || ||||||||||||||||||||||||    
T  18631515 cctatgaagcacagatacgaacacggacaccggacacgacacggacact 18631467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University