View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10460_low_33 (Length: 229)
Name: NF10460_low_33
Description: NF10460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10460_low_33 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 33105633 - 33105873
Alignment:
| Q |
1 |
aaattacatccaaccttcaccaaatctcatcactatcagtccgtttccaccttttcactctgccgccttttccggaacgcgtacaacagacatttattcc |
100 |
Q |
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| T |
33105633 |
aaattacatccaaccttcaccaaatctcatcactatcagtccgtttccaccttttcactctgccgccttttccggaacgcgtacaacagacatttattcc |
33105732 |
T |
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| Q |
101 |
a------------tccatcaatcatcctcttttcactattatcccctatgtcacacacaccctattatatcgtgaaccaccattcatcaatcatcaaccg |
188 |
Q |
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| T |
33105733 |
atccatccatccatccatcaatcatcctctattcactattatcccctatgtcacacacaccctattatatcgtgaaccaccattcatcaatcatcaaccg |
33105832 |
T |
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| Q |
189 |
tccatccatttatttactctgaaacaaacaaagtgcgacat |
229 |
Q |
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| T |
33105833 |
tccatccatttatttactctgaaacaaacaaagtgcgacat |
33105873 |
T |
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