View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10460_low_34 (Length: 211)
Name: NF10460_low_34
Description: NF10460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10460_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 28686612 - 28686799
Alignment:
| Q |
1 |
tagagtgtatggactacctgggcagcctccagtgaatttcaaacaatatgctgggtacataaatgttaatgaaactcatggaagagcactgttttattgg |
100 |
Q |
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| T |
28686612 |
tagagtgtatggactacctgggcagcctccagtgaatttcaaacaatatgctgggtacataaatgttaatgaaactcatggaagagcactgttttattgg |
28686711 |
T |
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| Q |
101 |
ttttttgagtctgttgatcaacctcaaacaaaacctcttctcctttggcttaatggaggtatttttctcactccactcttgattatag |
188 |
Q |
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| T |
28686712 |
ttttttgagtctgttgatcaacctcaaacaaaacctcttctcctttggcttaatggaggtatttttctcactccactcttgattatag |
28686799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 36 - 109
Target Start/End: Original strand, 3338496 - 3338569
Alignment:
| Q |
36 |
atttcaaacaatatgctgggtacataaatgttaatgaaactcatggaagagcactgttttattggttttttgag |
109 |
Q |
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| T |
3338496 |
atttcaaacactatgctggttatgtcattgtcaatgaaaccaatggaagatcactcttttattggttttttgag |
3338569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 109
Target Start/End: Original strand, 3332178 - 3332222
Alignment:
| Q |
65 |
gttaatgaaactcatggaagagcactgttttattggttttttgag |
109 |
Q |
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| T |
3332178 |
gttaatgaaaccaatggaagagcattgttttactggttttttgag |
3332222 |
T |
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