View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10460_low_5 (Length: 510)
Name: NF10460_low_5
Description: NF10460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10460_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 16 - 491
Target Start/End: Original strand, 24065936 - 24066409
Alignment:
| Q |
16 |
taggtgcaagaaaagatgataacgcgaataaacaaaagtccgccctagagatttttggaaccaatctgacaaaattggcacaagaggtatggtggtaatg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24065936 |
taggtgcaagaaaagatgataacgcgaataaacaaaagtccgccctagagatttttggaaccaatctgacaaaattggcacaagaggtatggtggtaatg |
24066035 |
T |
|
| Q |
116 |
gcattgaattttgttaatcaatgatttgtgattacagcatatcattgtgtattacttatatgaattatagtgctacaaaaatgtttaaaaagtgcnnnnn |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
24066036 |
gcattgaattttgttaatcaatgatttgtgattacagcatatcattgtgtattacttatatgaattatagtgctagaaaaatgtttaaaa-gtgcttttt |
24066134 |
T |
|
| Q |
216 |
nngtagggtaaacttcatccttttgtgggaagggaagagcaggtggagcgcgtgattcagataatttgtagaaggatgaaaaacaacccttgccttgttg |
315 |
Q |
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|||||||| ||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
24066135 |
ta-tagggtaagcttcatccttttgtgggaagggaagagcaagtagagcgcgtgattcaaataatttgtagaaggatgaaaaacaacccttgccttgttg |
24066233 |
T |
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| Q |
316 |
gagaacctggagtagggaaaacatcaatcatacaaggtcttgctcagagaattttgagtggatctgttcctgaaaaactcaaggggaaaaaggtaagtgc |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
24066234 |
gagaacctggagtagggaaaacatcaatcatacaaggtcttgctcagagaattttgagcggatctgttcctgaaaaactcaaggggaaaaaggtaagtgc |
24066333 |
T |
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| Q |
416 |
tactagtactataaacctattcgatactagtgctagttttatgattggcataagaagaaagattatgcagcatatt |
491 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
24066334 |
tactagtactataaacctattcgttactagtgctagttttatgattggcatgagaagaaagattatgcagcatatt |
24066409 |
T |
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