View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10460_low_6 (Length: 450)
Name: NF10460_low_6
Description: NF10460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10460_low_6 |
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| [»] scaffold0548 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 382; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Original strand, 32556959 - 32557393
Alignment:
| Q |
1 |
actatacaacaaaggctagctaacaatctgtcttggctttcacctgagtaagcaaatttgtcacactcagagaatcccaaataatttgccacannnnnnn |
100 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32556959 |
actatacaacaaaggctagctaacaatctgtattggctttcacccgagtaagcaaatttgtcacactcagagaatcccaaataatttgccacattttttt |
32557058 |
T |
|
| Q |
101 |
-aaacataagggtggatttaaataacttcattcttttatacatcggggctgcaataagctacagttagactatactgcaggagtcattacatctatctat |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32557059 |
taaacataagggtggatttaaataacttcattcttttatacattggggctgcaataagctacagttagactatactgcaggagtcattacatctatctat |
32557158 |
T |
|
| Q |
200 |
tatatcaaaataaactacaatttcagctaatgtatgtttcttcagttgcagaatatcatagcaagcaaaaagatcattagagagctcaagcaaaataaac |
299 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32557159 |
tatatcaaaataaactacaatttccgctaatgtatgtttcttcatttgcagaatatcatagcaagcaaaaagatcattagagagctcaagcaaaataaac |
32557258 |
T |
|
| Q |
300 |
aaaaaacaagcataagacaaatccttgaacatgagaaccaaaagtcaaatgttttgtcttagcattgatgtctgatctacatctaggggaggcggaggat |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32557259 |
aaaaaacaagcataagacaaatccttgaacatgagaaccaaaagtcaaatgttttgtcttagcattgatgtctgatctacttctaggggaggcggaggat |
32557358 |
T |
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| Q |
400 |
gaggtggagggttgccttctcttggatgttgtaat |
434 |
Q |
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| T |
32557359 |
gaggtggagggttgccttctcttggatgttgtaat |
32557393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 392 - 436
Target Start/End: Complemental strand, 32710763 - 32710719
Alignment:
| Q |
392 |
cggaggatgaggtggagggttgccttctcttggatgttgtaattg |
436 |
Q |
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| T |
32710763 |
cggaggatgaggttgagggttgacttctcttggatgttgtaattg |
32710719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 166 - 348
Target Start/End: Complemental strand, 32744449 - 32744266
Alignment:
| Q |
166 |
agactatactgcaggagtcattacatctatctattatatcaaaataaactacaatttcagctaatgtatgtttcttcagttgcagaatatca-----tag |
260 |
Q |
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|||||| ||| || |||||||||||||||||||| | | ||||| |||||| ||||||||||||| |||||||| | |||||||| | || ||| |
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| T |
32744449 |
agactagactacaagagtcattacatctatctataagag--aaatagactacagtttcagctaatgtgtgtttcttaa-ttgcagaaaaacaaacaatag |
32744353 |
T |
|
| Q |
261 |
caagcaaaaagatcattagagagctcaagcaaaataaacaaaaaacaagcataagacaaatccttgaacatgagaaccaaaagtcaaa |
348 |
Q |
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| T |
32744352 |
ccagcaaaa-gatcattccaaagctcaataaaaataaaataaaaagaagcaaaagttaaatccttgaacatgggaagcaaaagtcaaa |
32744266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 436
Target Start/End: Complemental strand, 25477927 - 25477888
Alignment:
| Q |
397 |
gatgaggtggagggttgccttctcttggatgttgtaattg |
436 |
Q |
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| T |
25477927 |
gatgaggtggatggttgacttctcttggatgttgtaattg |
25477888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 436
Target Start/End: Complemental strand, 32763523 - 32763474
Alignment:
| Q |
387 |
ggaggcggaggatgaggtggagggttgccttctcttggatgttgtaattg |
436 |
Q |
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| T |
32763523 |
ggaggcggatgaggaggtggatggttgaattctcttggatgttgtaattg |
32763474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0548 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0548
Description:
Target: scaffold0548; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 348
Target Start/End: Complemental strand, 10661 - 10614
Alignment:
| Q |
301 |
aaaaacaagcataagacaaatccttgaacatgagaaccaaaagtcaaa |
348 |
Q |
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||||| ||||| ||| |||||||||||||||||||| ||||||||||| |
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| T |
10661 |
aaaaaaaagcaaaagtcaaatccttgaacatgagaagcaaaagtcaaa |
10614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 348
Target Start/End: Original strand, 15102343 - 15102390
Alignment:
| Q |
301 |
aaaaacaagcataagacaaatccttgaacatgagaaccaaaagtcaaa |
348 |
Q |
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||||| ||||| ||| |||||||||||||||||||| ||||||||||| |
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| T |
15102343 |
aaaaaaaagcaaaagtcaaatccttgaacatgagaagcaaaagtcaaa |
15102390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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