View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10460_low_7 (Length: 449)
Name: NF10460_low_7
Description: NF10460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10460_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 160; Significance: 4e-85; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 41153355 - 41153518
Alignment:
| Q |
1 |
taaatataagaagtggataattgtgtttttattgaatgatccaacataaaattttacttacaggcttcaacaccaatattttaactactttaatatattt |
100 |
Q |
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| T |
41153355 |
taaatataagaagtggataattgtgtttttattgaatgatccaacataaaattttacttataggcttcaacaccaatattttaactactttaatatattt |
41153454 |
T |
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| Q |
101 |
aatgatgacagggctgatccaatatagtatttagattcttaaagaaggtttttgtattgagaca |
164 |
Q |
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| T |
41153455 |
aatgatgacagggctgatccaatatagtatttagattcttaaagaaggtttttgtattgagaca |
41153518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 232 - 433
Target Start/End: Original strand, 41153586 - 41153787
Alignment:
| Q |
232 |
cttcaataccgaactagatgtatttcgattaacttcaacgtggagcttataaaaaacaacgtagagtttataagacttcttataagatctcaaactcaat |
331 |
Q |
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| T |
41153586 |
cttcaatatcgaactagatgtatttcgattaacttcaacgtggagcttataaaaaacaacgtagagcttataagacttcttataagatctcaaactcaat |
41153685 |
T |
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| Q |
332 |
tataaactgccaataaattctagctcaaatgnnnnnnntgtcgaaattgctatgttaaatgtcgtaaccgagaattgaatttgggtcgttcagttgtatg |
431 |
Q |
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| T |
41153686 |
tataaactgcccataaattctagctcaaataaaaaaaatgtcgaaattgctatactaaacgtcgtgaccgagaattgaatttgggtcgttcagttgcatg |
41153785 |
T |
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| Q |
432 |
tg |
433 |
Q |
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|| |
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| T |
41153786 |
tg |
41153787 |
T |
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