View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10461_high_14 (Length: 269)
Name: NF10461_high_14
Description: NF10461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10461_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 42529442 - 42529656
Alignment:
| Q |
18 |
atctcagttcttggaaatacagatcaacaagtattgaatacataaggagggccaagccggatgccggttttgatctttttcagtcagagtcttttgttgt |
117 |
Q |
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| T |
42529442 |
atctcagttcttggaaatacagatcaacaagtattgaatacacaaggagggccaagccggatgccggttttgatctttttcagtcagattcttttgttgt |
42529541 |
T |
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| Q |
118 |
aaaatttgatgatgttaatgtcaaggtcctaacctactctgcgcaagatagtatattcaaggtttttgatcttaaaaactacacttttctatactcgttt |
217 |
Q |
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| T |
42529542 |
aaaatttgatgatgttaatgtcaaggtcttaacctactctgcgcaagatagtatgttcaaggtttttgaccttaaaaactacacttttctatactcgttt |
42529641 |
T |
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| Q |
218 |
tcatttagcaatgtt |
232 |
Q |
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||||||||||||||| |
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| T |
42529642 |
tcatttagcaatgtt |
42529656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 33 - 232
Target Start/End: Original strand, 42535179 - 42535378
Alignment:
| Q |
33 |
aatacagatcaacaagtattgaatacataaggagggccaagccggatgccggttttgatctttttcagtcagagtcttttgttgtaaaatttgatgatgt |
132 |
Q |
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| T |
42535179 |
aatacagatcaacacgcattgaagacataaggagggccaagccggatgccggttttgatctttttcagtcagagtcttttgttgtgaaatttgatgatgt |
42535278 |
T |
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| Q |
133 |
taatgtcaaggtcctaacctactctgcgcaagatagtatattcaaggtttttgatcttaaaaactacacttttctatactcgttttcatttagcaatgtt |
232 |
Q |
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| T |
42535279 |
taatgccaaggtcctaacctactctgcgcaagatagtatattcaaggtttttgatcttaaaaactacacttttctatacttgttttcatttagcaatgtt |
42535378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 27822302 - 27822355
Alignment:
| Q |
167 |
agtatattcaaggtttttgatcttaaaaactacacttttctatactcgttttca |
220 |
Q |
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| T |
27822302 |
agtatatacaaggtcttcgatcttaaaaactacactttgctatactcgatttca |
27822355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 111
Target Start/End: Original strand, 27822082 - 27822138
Alignment:
| Q |
55 |
atacataaggagggccaagccggatgccggttttgatctttttcagtcagagtcttt |
111 |
Q |
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| T |
27822082 |
atacataaagagggccaagccggatgctggttttcctcttttccagtccgagtcttt |
27822138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 168
Target Start/End: Original strand, 27822159 - 27822207
Alignment:
| Q |
120 |
aatttgatgatgttaatgtcaaggtcctaacctactctgcgcaagatag |
168 |
Q |
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| T |
27822159 |
aatttgatgatgttaatgcaaaggtcctaacatactctgcgcaggatag |
27822207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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