View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10461_high_21 (Length: 213)
Name: NF10461_high_21
Description: NF10461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10461_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 7e-82; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 15 - 197
Target Start/End: Original strand, 35902638 - 35902820
Alignment:
| Q |
15 |
aagaattgagtccctaatctggaaatgcaacatatttgtttagttttagttaggttctttatcttacttttaaattcagtttggtcgtaatatagtctca |
114 |
Q |
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| T |
35902638 |
aagaattgagtccctaatctggaaatgcaacatatttgtttagttttagttaggttctttatcttacttttaaattcagtttggtcataatatagtctca |
35902737 |
T |
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| Q |
115 |
ttttatattcatttagtcctaatgatcctttannnnnnncaaattgttctttcacttttatgacaaatttaaggatcatgagt |
197 |
Q |
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|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35902738 |
ttttttattcatttagtcctaatgatcctttatttttttcaaattgttctttcacttttatgacaaatttaaggatcatgagt |
35902820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 23892425 - 23892606
Alignment:
| Q |
18 |
aattgagtccctaa-tctggaaatgcaacatatttgtttagttttagttaggttctttatcttacttttaaattcagtttggtcgtaatatagtctcatt |
116 |
Q |
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||||| |||||||| ||| |||||||||||||||||||||||||||||| |||| ||||||||| |||||||| ||||||| || |||||| |||||||| |
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| T |
23892425 |
aattgggtccctaaatcttgaaatgcaacatatttgtttagttttagtttggttatttatcttatttttaaatccagtttgctcataatattgtctcatt |
23892524 |
T |
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| Q |
117 |
ttatattc-atttagtcctaatgatcctttannnnnnncaaattgttctttcacttttatgacaaatttaaggatcatgagt |
197 |
Q |
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|||||||| ||||||||||||||| |||||| |||||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
23892525 |
ttatattcaatttagtcctaatgaccctttatttttttcaaattgttctttcgcttctatgacaaatttaaggatcatgagt |
23892606 |
T |
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