View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10461_high_4 (Length: 412)
Name: NF10461_high_4
Description: NF10461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10461_high_4 |
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| [»] scaffold0035 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 18 - 399
Target Start/End: Original strand, 40199525 - 40199915
Alignment:
| Q |
18 |
ctattgtcatgattctctttgcttgggttacttactacacttccattcttctatgcgaatgttatcgtgatgatgatcctatcaatggcaagagaaacta |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
40199525 |
ctattgtcatgattctctttgcttgggttacttactacacttccattcttctatgcgaatgttatcgtaatgatgatcctatcaatggcaagagaaacta |
40199624 |
T |
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| Q |
118 |
cacttacatggatgctgttcattccaatcttggtaaattcaaattcacacacct-------tgctaactatacatgcatacatacataagaagaaaaaca |
210 |
Q |
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| T |
40199625 |
cacttacatggatgctgttcattccaatcttggtaaattcaaattcacacaccttgctaaatgctaactatacatgcatacatacataagaagaaaaaca |
40199724 |
T |
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| Q |
211 |
aattttaaattttgttcagaatgaaacatgaaatactc--gttcatgcaggatagatgttagacacaatgtccaagacaacgtgtataatgtacaagcnn |
308 |
Q |
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| T |
40199725 |
aattttaaattttgttcagaatgtaacatgaaatactcgtgttcacgcaggatagatgttagatacaatgtccaagacaacgtgtataatgtacaagtaa |
40199824 |
T |
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| Q |
309 |
nnnnntcaacatataacaataaataaatgtaaagcagtaaaggaggacacatataattggtaacctagttcggtgcaacgtaacctactct |
399 |
Q |
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| T |
40199825 |
aaaaatcaacatataacaataaataaatgtaaagcagtaaaggaggacacatataattggtaacctagttcggtgcaacgtaacctactct |
40199915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 40207844 - 40207983
Alignment:
| Q |
18 |
ctattgtcatgattctctttgcttgggttacttactacacttccattcttctatgcgaatgttatcgtgatgatgatcctatcaatggcaagagaaacta |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
40207844 |
ctattgtcatgattctctttgcttgggttacttactacactgccattcttctttgtgaatgttatcgtaatgatgatcctatcaatggcaagagaaacta |
40207943 |
T |
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| Q |
118 |
cacttacatggatgctgttcattccaatcttggtaaattc |
157 |
Q |
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| T |
40207944 |
cacttacatggatgttgttcattccaatcttggtaaattc |
40207983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 18 - 185
Target Start/End: Original strand, 40203688 - 40203855
Alignment:
| Q |
18 |
ctattgtcatgattctctttgcttgggttacttactacacttccattcttctatgcgaatgttatcgtgatgatgatcctatcaatggcaagagaaacta |
117 |
Q |
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||||||| |||||||||||||||||||||||||| || || ||||||||||| || |||||||||||| || ||||||||||| ||||||||||||||| |
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| T |
40203688 |
ctattgttatgattctctttgcttgggttacttattatacctccattcttctctgtgaatgttatcgtactggtgatcctatcagtggcaagagaaacta |
40203787 |
T |
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| Q |
118 |
cacttacatggatgctgttcattccaatcttggtaaattcaaattcacacaccttgctaactatacat |
185 |
Q |
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| T |
40203788 |
tacttacatggatgttgttcattccaatcttggtaaattcaaattcacacacctagctaaccatacat |
40203855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 239 - 302
Target Start/End: Original strand, 18536 - 18599
Alignment:
| Q |
239 |
tgaaatactcgttcatgcaggatagatgttagacacaatgtccaagacaacgtgtataatgtac |
302 |
Q |
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| T |
18536 |
tgaaattctcgttcacgtaggacaaatgttagacacaatgtccaagacaaagtgtataacgtac |
18599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 301
Target Start/End: Original strand, 3322433 - 3322495
Alignment:
| Q |
239 |
tgaaatactcgttcatgcaggatagatgttagacacaatgtccaagacaacgtgtataatgta |
301 |
Q |
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| T |
3322433 |
tgaaattcttgttcacgcaagatagatgttagacacaatgttcgggacaacgtgtataatgta |
3322495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 399
Target Start/End: Original strand, 3322516 - 3322592
Alignment:
| Q |
323 |
aacaataaataaatgtaaagcagtaaaggaggacacatataattggtaacctagttcggtgcaacgtaacctactct |
399 |
Q |
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|||| |||||||| ||||| || |||||||| |||| | ||||||||||| | ||| ||||||||| ||||||||| |
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| T |
3322516 |
aacagtaaataaacgtaaaacaataaaggagaacacggagaattggtaacccaattcagtgcaacgtcacctactct |
3322592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 297
Target Start/End: Original strand, 23181249 - 23181305
Alignment:
| Q |
241 |
aaatactcgttcatgcaggatagatgttagacacaatgtccaagacaacgtgtataa |
297 |
Q |
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|||| |||||||| || ||| | ||||||||||||||||||||||||| |||||||| |
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| T |
23181249 |
aaattctcgttcacgctggacatatgttagacacaatgtccaagacaaggtgtataa |
23181305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 297
Target Start/End: Original strand, 23592506 - 23592562
Alignment:
| Q |
241 |
aaatactcgttcatgcaggatagatgttagacacaatgtccaagacaacgtgtataa |
297 |
Q |
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|||| |||||||| || ||| | ||||||||||||||||||||||||| |||||||| |
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| T |
23592506 |
aaattctcgttcacgctggacatatgttagacacaatgtccaagacaaggtgtataa |
23592562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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