View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10461_high_6 (Length: 399)
Name: NF10461_high_6
Description: NF10461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10461_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 18 - 333
Target Start/End: Original strand, 32663217 - 32663532
Alignment:
| Q |
18 |
aaattaaacttgcgagaaagtgaatgaatgaaagacattactttgaattgaaaattgactgaaaagttaaactacttcgaataagtttacaagaatgtta |
117 |
Q |
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| T |
32663217 |
aaattaaacttgcgagaaagtgaatgaatgaaagacattactttgaattgaaaattgactgaaaagttaaactacttcgaataagtttacaagaatgtta |
32663316 |
T |
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| Q |
118 |
gaggaatcaaaaagactgtacaatgttacttaaaattatggaaaactttagttagcttctagttaggagtatgcttgataatttaaatatttgttctttt |
217 |
Q |
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| T |
32663317 |
gaggaatcaaaaagactgtacaatgttacttaaaattatggaaaactttagttagcttctagttaggagtatgcttgataatttaaatatttgttctttt |
32663416 |
T |
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| Q |
218 |
tgtgggaactcttatttatagagcaggggaactaagtaatttttacgatcgtggcatttagctcgttgaactattctcaataaatcatatgttgaaagtc |
317 |
Q |
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| T |
32663417 |
tgtgggaactcttatttatagagtaggggaactaagtaatttttacgatcgtggcatctagcttgttgaactattctcaataaatcatgtgttaaaagtc |
32663516 |
T |
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| Q |
318 |
gacacacacttcgtta |
333 |
Q |
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| T |
32663517 |
gacacacacttcgtta |
32663532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 331 - 390
Target Start/End: Original strand, 32663566 - 32663625
Alignment:
| Q |
331 |
ttaggagcatgttgtgacccgatattccacgtagttatgttttgtgaatcttcttcttct |
390 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
32663566 |
ttaggagcatgttgtgacccgacattccacgtagttatgttttgtgaatcttcttcttct |
32663625 |
T |
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