View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10461_high_7 (Length: 373)

Name: NF10461_high_7
Description: NF10461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10461_high_7
NF10461_high_7
[»] chr1 (1 HSPs)
chr1 (1-373)||(31339416-31339788)


Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 31339788 - 31339416
Alignment:
Q  1 aatctcaaaagttatcaactttataatatggaacaaatacctattatatgtttttattgtgtaatcatcaactgnnnnnnnnnnnnnngaaaagacaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||              ||||||||||||    
T  31339788 aatctcaaaagttatcaactttataatatggaacaaatacctactatatgtttttattgtgtaatcatcaactgtttttttcttttttgaaaagacaaaa 31339689  T
Q  101 ttaatttcattgctaaaataaatggtactacaagctgtaccaaagaaatacaatcatgaactggtccttcaaaaacttgagaattttctctttaattttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31339688 ttaatttcattgctaaaataaatggtactacaagctgtaccaaagaaatacaatcatgaactggtccttcaaaaacttgagaattttctctttaattttt 31339589  T
Q  201 agtaatttaatatattcatatatactcaagcacttcactaattgaactgtacgtatagggcacaagtggtagggtggccaccagtgcggtcattccgtaa 300  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31339588 agtaatttaaaatattcatatatactcaagcacttcactaattgaactgtacgtatagggcacaagtggtagggtggccaccagtgcggtcattccgtaa 31339489  T
Q  301 gaacatgtttgctgcccaaaagagcaatgaaggatctgaagaaagtgaaaagaagaatggcactaataatcca 373  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||    
T  31339488 gaacatgtttgctgcccaaaagagcaatgaaggatcagaagaaagtgaaaagaagaatagcaataataatcca 31339416  T

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