View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10461_low_1 (Length: 652)

Name: NF10461_low_1
Description: NF10461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10461_low_1
NF10461_low_1
[»] chr3 (4 HSPs)
chr3 (294-636)||(51120118-51120460)
chr3 (18-182)||(51119841-51120005)
chr3 (69-169)||(51119565-51119671)
chr3 (501-535)||(51112886-51112920)
[»] chr5 (4 HSPs)
chr5 (502-546)||(41886292-41886336)
chr5 (506-548)||(41900191-41900233)
chr5 (599-630)||(28660967-28660998)
chr5 (506-544)||(32268880-32268918)
[»] chr2 (1 HSPs)
chr2 (501-548)||(45244521-45244568)
[»] chr4 (7 HSPs)
chr4 (506-544)||(566754-566792)
chr4 (509-544)||(1524000-1524035)
chr4 (501-548)||(1537246-1537293)
chr4 (506-548)||(1488824-1488866)
chr4 (506-547)||(12120920-12120961)
chr4 (512-548)||(554097-554133)
chr4 (492-548)||(645445-645501)
[»] chr1 (1 HSPs)
chr1 (492-548)||(9582031-9582087)
[»] chr6 (3 HSPs)
chr6 (501-548)||(9412450-9412497)
chr6 (507-547)||(6403935-6403975)
chr6 (507-547)||(6433172-6433212)
[»] chr8 (1 HSPs)
chr8 (506-548)||(17642614-17642656)
[»] chr7 (1 HSPs)
chr7 (506-543)||(10616209-10616246)


Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 294 - 636
Target Start/End: Original strand, 51120118 - 51120460
Alignment:
Q  294 caaggtatcatctcttgattctgtctcacttttaatattgttcgtataagtttaacctaatcttaaacttgcaaaccctcacagatagcataactgtcac 393  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  51120118 caaggtatcatctcttgattctgtctcacttttaatattgttcgtataagtttaacctaatcttaaacttgcaaaccctcacagatagcacaactgtcac 51120217  T
Q  394 cggcagcaaccacgtcaatatgaaaagaaagagaagtaactctctcaaatcttcccaacaacaattgttttcttcttccacaaaaacgacaacaattaca 493  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  51120218 cggcagcaaccacgtcaatatgaaaagaaagagaagtaactctctcaaatcttcccaacaacaattgttttcttcttccacaaaaacgacaaccattaca 51120317  T
Q  494 gcagcatatttctatttacctgatgactgttgggaatgtgtcttcaaattcctcacctatatggcaacggtaacatcagcaacagctacttgaaacgtct 593  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51120318 gcagcatatttctatttacctgatgactgttgggaatgtgtcttcaaattcctcacctatatggcaacggtaacatcagcaacagctacttgaaacgtct 51120417  T
Q  594 atccgttgtctcgaagcagttcctctctatcaccaaccttctc 636  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  51120418 atccgttgtctcgaagcagttcctctctatcaccaaccttctc 51120460  T

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Target: chr3; HSP #2
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 51119841 - 51120005
Alignment:
Q  18 aataaatatatttttgcaaacgataaacttatttttccagccagtattatcattcttgcagaaaataaacttatttaggaagccaataaatttatttttg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51119841 aataaatatatttttgcaaacgataaacttatttttccagccagtattatcattcttgcagaaaataaacttatttaggaagccaataaatttatttttg 51119940  T
Q  118 caagcaataaacttatttctagtaccattaacatattattgcagcaaataattcagtctcttgag 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51119941 caagcaataaacttatttctagtaccattaacatattattgcagcaaataattcagtctcttgag 51120005  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 169
Target Start/End: Original strand, 51119565 - 51119671
Alignment:
Q  69 attcttgcagaaaataaacttatttaggaagccaataaatttat-----ttttgcaagcaataaacttatttctagtacc-attaacatattattgcagc 162  Q
    ||||||| |||||||| ||||||||||||||||||| | ||| |     |||||||| |||||||||||||| | ||||| || |||||||||||||| |    
T  51119565 attcttgtagaaaatatacttatttaggaagccaattattttttattttttttgcaatcaataaacttatttttggtaccaataaacatattattgcaac 51119664  T
Q  163 aaataat 169  Q
    |||||||    
T  51119665 aaataat 51119671  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 501 - 535
Target Start/End: Original strand, 51112886 - 51112920
Alignment:
Q  501 atttctatttacctgatgactgttgggaatgtgtc 535  Q
    |||||||||||||||||||||||||||||| ||||    
T  51112886 atttctatttacctgatgactgttgggaatatgtc 51112920  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 502 - 546
Target Start/End: Original strand, 41886292 - 41886336
Alignment:
Q  502 tttctatttacctgatgactgttgggaatgtgtcttcaaattcct 546  Q
    |||||||||||||||||| ||||||||||||||||||||||||||    
T  41886292 tttctatttacctgatgagtgttgggaatgtgtcttcaaattcct 41886336  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 506 - 548
Target Start/End: Original strand, 41900191 - 41900233
Alignment:
Q  506 tatttacctgatgactgttgggaatgtgtcttcaaattcctca 548  Q
    |||||||| ||||| ||||||||||||||||||||||||||||    
T  41900191 tatttaccagatgagtgttgggaatgtgtcttcaaattcctca 41900233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 599 - 630
Target Start/End: Original strand, 28660967 - 28660998
Alignment:
Q  599 ttgtctcgaagcagttcctctctatcaccaac 630  Q
    ||||||||||||||||||||||||||||||||    
T  28660967 ttgtctcgaagcagttcctctctatcaccaac 28660998  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 506 - 544
Target Start/End: Complemental strand, 32268918 - 32268880
Alignment:
Q  506 tatttacctgatgactgttgggaatgtgtcttcaaattc 544  Q
    |||||||| ||||| ||||||||||||||||||||||||    
T  32268918 tatttaccagatgagtgttgggaatgtgtcttcaaattc 32268880  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 501 - 548
Target Start/End: Original strand, 45244521 - 45244568
Alignment:
Q  501 atttctatttacctgatgactgttgggaatgtgtcttcaaattcctca 548  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  45244521 atttctatttacctgatgagtgttgggaatgtgtcttgaaattcctca 45244568  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 506 - 544
Target Start/End: Complemental strand, 566792 - 566754
Alignment:
Q  506 tatttacctgatgactgttgggaatgtgtcttcaaattc 544  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  566792 tatttacctgatgactgttgggaacgtgtcttcaaattc 566754  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 509 - 544
Target Start/End: Original strand, 1524000 - 1524035
Alignment:
Q  509 ttacctgatgactgttgggaatgtgtcttcaaattc 544  Q
    |||||||||||||||||||||| |||||||||||||    
T  1524000 ttacctgatgactgttgggaatctgtcttcaaattc 1524035  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 501 - 548
Target Start/End: Original strand, 1537246 - 1537293
Alignment:
Q  501 atttctatttacctgatgactgttgggaatgtgtcttcaaattcctca 548  Q
    |||| |||||||||||||| |||||||||||||| |||| ||||||||    
T  1537246 atttatatttacctgatgagtgttgggaatgtgtattcagattcctca 1537293  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 506 - 548
Target Start/End: Original strand, 1488824 - 1488866
Alignment:
Q  506 tatttacctgatgactgttgggaatgtgtcttcaaattcctca 548  Q
    |||||||||||||| || |||||||||||| ||||||||||||    
T  1488824 tatttacctgatgagtgctgggaatgtgtcgtcaaattcctca 1488866  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 547
Target Start/End: Original strand, 12120920 - 12120961
Alignment:
Q  506 tatttacctgatgactgttgggaatgtgtcttcaaattcctc 547  Q
    |||||||||||||| ||||||||||||||| ||| |||||||    
T  12120920 tatttacctgatgagtgttgggaatgtgtcatcagattcctc 12120961  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 512 - 548
Target Start/End: Complemental strand, 554133 - 554097
Alignment:
Q  512 cctgatgactgttgggaatgtgtcttcaaattcctca 548  Q
    |||||||| |||||||||| |||||||||||||||||    
T  554133 cctgatgaatgttgggaatttgtcttcaaattcctca 554097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 492 - 548
Target Start/End: Complemental strand, 645501 - 645445
Alignment:
Q  492 cagcagcatatttctatttacctgatgactgttgggaatgtgtcttcaaattcctca 548  Q
    |||| ||| |||| ||||||||| |||| ||||||| ||||||||||| ||||||||    
T  645501 cagctgcagatttttatttaccttatgattgttgggtatgtgtcttcagattcctca 645445  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 492 - 548
Target Start/End: Complemental strand, 9582087 - 9582031
Alignment:
Q  492 cagcagcatatttctatttacctgatgactgttgggaatgtgtcttcaaattcctca 548  Q
    ||||| || |||| ||||||||| |||||||||||||||  ||||||||||||||||    
T  9582087 cagcaacagatttttatttacctaatgactgttgggaatccgtcttcaaattcctca 9582031  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 501 - 548
Target Start/End: Complemental strand, 9412497 - 9412450
Alignment:
Q  501 atttctatttacctgatgactgttgggaatgtgtcttcaaattcctca 548  Q
    |||| |||||||||||||| ||||||||| || |||||||||||||||    
T  9412497 atttttatttacctgatgaatgttgggaaagtatcttcaaattcctca 9412450  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 507 - 547
Target Start/End: Complemental strand, 6403975 - 6403935
Alignment:
Q  507 atttacctgatgactgttgggaatgtgtcttcaaattcctc 547  Q
    |||| ||||||||||| |||||||| |||||||||||||||    
T  6403975 atttgcctgatgactgatgggaatgcgtcttcaaattcctc 6403935  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 507 - 547
Target Start/End: Complemental strand, 6433212 - 6433172
Alignment:
Q  507 atttacctgatgactgttgggaatgtgtcttcaaattcctc 547  Q
    |||||||||||||||||||||||||  |||||| |||||||    
T  6433212 atttacctgatgactgttgggaatgcatcttcagattcctc 6433172  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 506 - 548
Target Start/End: Original strand, 17642614 - 17642656
Alignment:
Q  506 tatttacctgatgactgttgggaatgtgtcttcaaattcctca 548  Q
    |||||||||||||| |||||||| | |||||||||||||||||    
T  17642614 tatttacctgatgagtgttgggagtctgtcttcaaattcctca 17642656  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 543
Target Start/End: Complemental strand, 10616246 - 10616209
Alignment:
Q  506 tatttacctgatgactgttgggaatgtgtcttcaaatt 543  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  10616246 tatttacctgatgagtgttgggaatgtatcttcaaatt 10616209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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