View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10461_low_12 (Length: 341)
Name: NF10461_low_12
Description: NF10461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10461_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 19 - 331
Target Start/End: Complemental strand, 41733823 - 41733511
Alignment:
| Q |
19 |
aatttggttccacctctataataaaactacaaactagtttcacataaatcaaatatggattcaattggttaatgaacttcatttaagggtgattcgtttg |
118 |
Q |
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| T |
41733823 |
aatttggttccacctctataataaaactataaactagtttcacataaatcaaatatggattcaattggttaatgaacttcatttaaaggtgattcgtttg |
41733724 |
T |
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| Q |
119 |
agataatatgagttcgagttctagttaatacaattttttatcgactttagttgtcgatcaattatcgccttttgtttttctttgtggcaggatatattta |
218 |
Q |
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| T |
41733723 |
agataatctgagttcgagttctagttaatacaatttttgatcgactttacttgtcgatcaattatcgccttttgtttttctttgtggcaggatatatttg |
41733624 |
T |
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| Q |
219 |
tcttcactgaatcccttatagagcaaatgtcattgaatctaaaacgtattcacgagttgggaataaacaaaatagcaattggtttattagagcctattgg |
318 |
Q |
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| T |
41733623 |
tcttcactgaatcccttataaagcaaatgtcattgaatctaaaacgtattcacgagttgggaataaacaaaatagcaattggtttattagagcctattgg |
41733524 |
T |
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| Q |
319 |
atgtgtgcctatg |
331 |
Q |
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| T |
41733523 |
atgtgtgcctatg |
41733511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 240 - 330
Target Start/End: Complemental strand, 41747702 - 41747612
Alignment:
| Q |
240 |
agcaaatgtcattgaatctaaaacgtattcacgagttgggaataaacaaaatagcaattggtttattagagcctattggatgtgtgcctat |
330 |
Q |
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| T |
41747702 |
agcaattgtcattaaatcttaaacgcattcaaagtttgggaataaataaaatagcaattgtattattagagcctataggatgtttgcctat |
41747612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 331
Target Start/End: Complemental strand, 41739466 - 41739410
Alignment:
| Q |
275 |
ttgggaataaacaaaatagcaattggtttattagagcctattggatgtgtgcctatg |
331 |
Q |
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| T |
41739466 |
ttgggaataaataaaatagcaattggattattagaacctatagggtgtttgcctatg |
41739410 |
T |
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