View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10461_low_14 (Length: 313)
Name: NF10461_low_14
Description: NF10461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10461_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 38 - 278
Target Start/End: Original strand, 5166797 - 5167037
Alignment:
| Q |
38 |
taatattaaaccaattttaaaatagatcgattaaaaatcggatcatagtataaaaccagtttacaaaattgaattggttctaaattaaggataaaatgac |
137 |
Q |
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| T |
5166797 |
taatattaaaccaattttaaaatagatcgattaaaaatcggatcatagtataaaaccaatttacaaaattgaattggttctaaattaaggataaaatgac |
5166896 |
T |
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| Q |
138 |
ctaaaatcggttaaagagttaacggatttttacaaaagtaacatttaggaatcaaaacaattcattaatgtcgtccaattcaacgggaaattatacccta |
237 |
Q |
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| T |
5166897 |
ctaaaaccggttaaagagttaacggatttttacaaaagtgacatttaggaatcaaaacaattcattaatgtcgtccaatttaactagaaattatacccta |
5166996 |
T |
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| Q |
238 |
taccgttacgtctataccctcacccctacaaattataaaaa |
278 |
Q |
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| T |
5166997 |
tactcctacgtctataccctcacccctacaaattataaaaa |
5167037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 223 - 270
Target Start/End: Complemental strand, 30240924 - 30240877
Alignment:
| Q |
223 |
ggaaattataccctataccgttacgtctataccctcacccctacaaat |
270 |
Q |
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| T |
30240924 |
ggaaattataccctatacctttacgtttataccttcaccccaacaaat |
30240877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 282
Target Start/End: Complemental strand, 18016649 - 18016589
Alignment:
| Q |
222 |
gggaaattataccctataccgttacgtctataccctcacccctacaaattataaaaaattc |
282 |
Q |
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| T |
18016649 |
gggaaattttaccctatacccttacctctatactttcacccctacaatttaccaaaaattc |
18016589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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