View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10461_low_15 (Length: 311)

Name: NF10461_low_15
Description: NF10461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10461_low_15
NF10461_low_15
[»] scaffold0197 (1 HSPs)
scaffold0197 (1-290)||(3126-3415)


Alignment Details
Target: scaffold0197 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 3415 - 3126
Alignment:
Q  1 ccaactgaccaagttctagttcaacaagagagtgacatgacaacatttgatgctgatggaaagaatcatatgcttgaatcacaacaagacatgatggtgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3415 ccaactgaccaagttctagttcaacaagagagtgacatgacaacatttgatgctgatggaaagaatcatatgcttgaatcacaacaagacatgatggtgt 3316  T
Q  101 tttcatgcttggaccaacaaggtatggttggtgagtttccaatggattttcaattagaaggatttgaagctatggtaagtggaggagagggtagtagtag 200  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3315 attcatgcttggaccaacaaggtatggttggtgagtttccaatggattttcaattagaaggatttgaagctatggtaagtggaggagagggtagtagtag 3216  T
Q  201 ccaatggaattgggaggatttgctcttagatatggatctatataatggtttttcttagattattgttccttattgccaatagggaagaca 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3215 ccaatggaattgggaggatttgctcttagatatggatctatataatggtttttcttagattattgttccttattgccaatagggaagaca 3126  T

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