View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10461_low_17 (Length: 285)
Name: NF10461_low_17
Description: NF10461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10461_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 45334718 - 45334984
Alignment:
| Q |
1 |
atgtctcaaatattccctgcaaacaacaaccagttagttagaagaacatggttccataaggatagaagaattagtctaagtgtgtgtttggctaagtatt |
100 |
Q |
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| T |
45334718 |
atgtctcaaatattccctgcaaacaacaaccagttagttagaagaacatggttccataaggatagaagaattagtctaagtgtgtgtttggctaagtatt |
45334817 |
T |
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| Q |
101 |
tcataaacaaaattttgaaagaatttgattttgtacagcagttaaattaccctccaactctgaagactgtaaaacagagaagtgaattccttgggtcctg |
200 |
Q |
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| T |
45334818 |
tcataaacaaaattttgaaagaatttgattttgtacagcagttaaattaccctccaactctgaagactgtaaaacagagaagtgaattccttgggtcctg |
45334917 |
T |
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| Q |
201 |
cagtacacgaagttcaaaactcaaactgtgagaatggcagaaaaactataggtgacaaccaataatt |
267 |
Q |
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| T |
45334918 |
cagtacacgaagttcaaaactcaaactgtgagaatggcagaaaaactataggtgacaaccaataatt |
45334984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 4 - 131
Target Start/End: Original strand, 20789594 - 20789720
Alignment:
| Q |
4 |
tctcaaatattccctgcaaacaacaaccagttagttagaagaacatggttccataaggatagaagaattagtctaagtgtgtgtttggctaagtatttca |
103 |
Q |
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| T |
20789594 |
tctcaaatattccctg-aaacaacaaccagttagttagaagaacactgtttcataaggacagtatagtttgtctaagtgtgtgtttggctaagtatttca |
20789692 |
T |
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| Q |
104 |
taaacaaaattttgaaagaatttgattt |
131 |
Q |
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| T |
20789693 |
taaacataattttgaaagaatatgattt |
20789720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 148 - 207
Target Start/End: Original strand, 20790011 - 20790070
Alignment:
| Q |
148 |
taccctccaactctgaagactgtaaaacagagaagtgaattccttgggtcctgcagtaca |
207 |
Q |
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||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
20790011 |
taccctccagctctgaagactgtaaaatagagaagtgaattccttgggtcctgcattaca |
20790070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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