View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10461_low_2 (Length: 640)
Name: NF10461_low_2
Description: NF10461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10461_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 428; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 129 - 624
Target Start/End: Complemental strand, 33154405 - 33153912
Alignment:
| Q |
129 |
gccctaccttgatcacctctcactatcaatggtagttagtcaaacatggcaattggttatatcatatcataggaccctaacctaaggcatacaattaaaa |
228 |
Q |
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| T |
33154405 |
gccctaccttgatcacctctcactatcaatggtagttagtcaaacatggcaattggttatatcatatcataggaccctaacctaaggcatacaattaaaa |
33154306 |
T |
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| Q |
229 |
tttgatcattgagtcctttcttcttgtataataattgcaaacccttttacttgtttcttaacaagacctaatttgttgacccgtaatgagtccattccct |
328 |
Q |
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| T |
33154305 |
tttgatcattgagtcctttcttcttgtataataattgcaaacccttttacttgtttcttaacaagacctaattcgttgacccgtaatgagtccattccct |
33154206 |
T |
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| Q |
329 |
tttgcaactatagtttcccacgcgttctcaagcatagaggcaaaataagtcccacatacacaaatggacccatagatcatatcaacnnnnnnnnnnnnnn |
428 |
Q |
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| T |
33154205 |
tttgcaactatagtttcccacgcgttctcaagcatagaggcaaaataagtcccacatacacaaatggacccatagatcatatcaac--tatatatatata |
33154108 |
T |
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| Q |
429 |
nnngctagttgaatggagttaaaatgatggaaatttacgtatcttcttaggaaaccatgagatgtgtaatgtagattatagtggacatgtttgcaaaatt |
528 |
Q |
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| T |
33154107 |
tatgctagttgaatggagttaaaatgatggaaatttacgtatcttcttaggaaaccatgagatgtgtaatgtagattatagtggacatgtttgcaaaatt |
33154008 |
T |
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| Q |
529 |
atcttgatctttaatcatatctatgccccccactgtgtcatttgtatataggtattcagttaatcacacacaaaattgttggagaagacaaagtgt |
624 |
Q |
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| T |
33154007 |
atcttgatctttaatcatatctatgctccccactgtgtcatttgtatataggtattcagttaatcacacacaaaattgttggagaagacacagtgt |
33153912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 33154521 - 33154440
Alignment:
| Q |
13 |
taggagaaggagaaaaggaccaaaagataatcatagtgggagggaatcttgaagtggtgagtgtttccaacctattgaaccg |
94 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33154521 |
taggagaaggagaaaaggaccaaaagataatcatagtgggagggaatcttgaagtggtgagtgtttccaacctattgaaccg |
33154440 |
T |
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