View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10461_low_28 (Length: 225)
Name: NF10461_low_28
Description: NF10461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10461_low_28 |
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| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 11708784 - 11708586
Alignment:
| Q |
18 |
atagatagggcagaagagaacaattgcaagccattttattgtttgaagcgaagagggaggtatttcaaatccagaaaatattgttctctccattgaagtc |
117 |
Q |
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| T |
11708784 |
atagatagggcagaagagaacaattgcaagccattttattgtttgaagcgaagagggaggtatgtcaaatccaggaaatattgttctctccattgaagtc |
11708685 |
T |
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| Q |
118 |
ccttgcttggtgaagaatgtaaaaacttgagcaaagacaatgccataaaccaaagttgaagtccaaattggaaccaaacttagaacagcctttgcttct |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
11708684 |
ccttgcttggtgaagaatgtaaaaacttgagcaaagacaataccataaaccaaagttgaagtccaaattggaaccaaccttagaacagcctttgcttct |
11708586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 11678146 - 11677948
Alignment:
| Q |
18 |
atagatagggcagaagagaacaattgcaagccattttattgtttgaagcgaagagggaggtatttcaaatccagaaaatattgttctctccattgaagtc |
117 |
Q |
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| T |
11678146 |
atagatagggctgaagagaagaattgcaagcccgttaatcgattgaagcgaagcgggaggtatgtcaaatccaggaaatattgttctctgcatagaactc |
11678047 |
T |
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| Q |
118 |
ccttgcttggtgaagaatgtaaaaacttgagcaaagacaatgccataaaccaaagttgaagtccaaattggaaccaaacttagaacagcctttgcttct |
216 |
Q |
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| T |
11678046 |
ccttgcttggtaaagaatgtaaaaacttgagcaaagataataccataaaccaaagttgtagcccaaattggaaccaaccttagtacagcctttgcttct |
11677948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 11686425 - 11686227
Alignment:
| Q |
18 |
atagatagggcagaagagaacaattgcaagccattttattgtttgaagcgaagagggaggtatttcaaatccagaaaatattgttctctccattgaagtc |
117 |
Q |
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| T |
11686425 |
atagatagggctgaagagaagaattgcaagcccgttaatcgattgaagcgaagcgggaggtatgtcaaatccaggaaatattgttctctgcatagaactc |
11686326 |
T |
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| Q |
118 |
ccttgcttggtgaagaatgtaaaaacttgagcaaagacaatgccataaaccaaagttgaagtccaaattggaaccaaacttagaacagcctttgcttct |
216 |
Q |
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| T |
11686325 |
ccttgcttggtaaagaatgtaaaaacttgagcaaagataataccataaaccaaagttgtagcccaaattggaaccaaccttagtacagcctttgcttct |
11686227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 30 - 216
Target Start/End: Complemental strand, 11699319 - 11699133
Alignment:
| Q |
30 |
gaagagaacaattgcaagccattttattgtttgaagcgaagagggaggtatttcaaatccagaaaatattgttctctccattgaagtcccttgcttggtg |
129 |
Q |
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| T |
11699319 |
gaagacaacaattgcaacaccgtttatcgtttgaagagaagcaggaggtatgtcgaagccaggaaatattgttctctccattgaactcccttgcttggtg |
11699220 |
T |
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| Q |
130 |
aagaatgtaaaaacttgagcaaagacaatgccataaaccaaagttgaagtccaaattggaaccaaacttagaacagcctttgcttct |
216 |
Q |
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||||| |||||||||||||||||||||||||||||||| ||||||| | ||||||||||| || ||||| || |||||||||||| |
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| T |
11699219 |
aagaaagtaaaaacttgagcaaagacaatgccataaactaaagttgtcgcccaaattggaattaaccttagtactgcctttgcttct |
11699133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 67 - 216
Target Start/End: Complemental strand, 11785523 - 11785374
Alignment:
| Q |
67 |
gaagagggaggtatttcaaatccagaaaatattgttctctccattgaagtcccttgcttggtgaagaatgtaaaaacttgagcaaagacaatgccataaa |
166 |
Q |
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|||| ||||||||| | || |||| |||||||||||||||||| ||| ||||||||||||||||||||||||| | ||||||||||| ||| ||||||| |
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| T |
11785523 |
gaagcgggaggtatgttgaaaccaggaaatattgttctctccatagaactcccttgcttggtgaagaatgtaaatatttgagcaaagataataccataaa |
11785424 |
T |
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| Q |
167 |
ccaaagttgaagtccaaattggaaccaaacttagaacagcctttgcttct |
216 |
Q |
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| T |
11785423 |
ctaaagtcgaagcccaaattggaatcaaccttagtactgcctttgcttct |
11785374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 67 - 216
Target Start/End: Complemental strand, 11789110 - 11788961
Alignment:
| Q |
67 |
gaagagggaggtatttcaaatccagaaaatattgttctctccattgaagtcccttgcttggtgaagaatgtaaaaacttgagcaaagacaatgccataaa |
166 |
Q |
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|||| ||||||||| | || |||| ||||||||||||||||| ||| ||||||| ||||||||||||||||| | ||||||||||| ||| ||||||| |
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| T |
11789110 |
gaagcgggaggtatgttgaaaccaggaaatattgttctctccaaagaactcccttgtttggtgaagaatgtaaatatttgagcaaagataataccataaa |
11789011 |
T |
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| Q |
167 |
ccaaagttgaagtccaaattggaaccaaacttagaacagcctttgcttct |
216 |
Q |
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| |||| || || ||||||||||| ||||||||| || |||||||||||| |
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| T |
11789010 |
ctaaagatgtagcccaaattggaatcaaacttagtactgcctttgcttct |
11788961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 67 - 216
Target Start/End: Complemental strand, 11801277 - 11801128
Alignment:
| Q |
67 |
gaagagggaggtatttcaaatccagaaaatattgttctctccattgaagtcccttgcttggtgaagaatgtaaaaacttgagcaaagacaatgccataaa |
166 |
Q |
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|||| ||||||||| | || |||| ||||||||||||||||| ||| ||||||| ||||||||||||||||| | ||||||||||| ||| ||||||| |
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| T |
11801277 |
gaagcgggaggtatgttgaaaccaggaaatattgttctctccaaagaactcccttgtttggtgaagaatgtaaatatttgagcaaagataataccataaa |
11801178 |
T |
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| Q |
167 |
ccaaagttgaagtccaaattggaaccaaacttagaacagcctttgcttct |
216 |
Q |
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| |||| || || ||||||||||| ||||||||| || |||||||||||| |
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| T |
11801177 |
ctaaagatgtagcccaaattggaatcaaacttagtactgcctttgcttct |
11801128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 53 - 216
Target Start/End: Complemental strand, 20539 - 20376
Alignment:
| Q |
53 |
ttattgtttgaagcgaagagggaggtatttcaaatccagaaaatattgttctctccattgaagtcccttgcttggtgaagaatgtaaaaacttgagcaaa |
152 |
Q |
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|||| |||||||| |||| |||||||| || || |||| |||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
20539 |
ttatcgtttgaagagaagccggaggtatgtcgaaaccaggaaatattgttctctgcatagaactcccttgcttggtgaagaatgtaaaaacttgagcaaa |
20440 |
T |
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| Q |
153 |
gacaatgccataaaccaaagttgaagtccaaattggaaccaaacttagaacagcctttgcttct |
216 |
Q |
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|| ||| |||||||||||||||| || ||||||||||||||| ||||| || |||||||||||| |
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| T |
20439 |
gataataccataaaccaaagttgtagcccaaattggaaccaaccttagtactgcctttgcttct |
20376 |
T |
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